mRNA_F-serratus_M_contig846.19836.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig846.19836.1
Unique NamemRNA_F-serratus_M_contig846.19836.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.680e-38
Identity = 75/148 (50.68%), Postives = 98/148 (66.22%), Query Frame = 1
Query:   13 VYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
            VY+LVP   VP G  V+G +W  K+K +   K+RLV  GW QVPG DC GTFAP C L+S R V AIAAE + +V+ L+V+T+FL AD+EE V+V+MA GYE  +   +  VMKL++SL  L  S + W  T+D  L  IGF  LK+D
Sbjct:  333 VYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSD 480          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.060e-33
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYE-THDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
            K   V +LVP  S+P G K +G RW  K+KA G+ K+RL V GW Q  GID  GT+AP     S   ++AIAAE  Y V  ++V T+FL ++VEEEVYV+ A GYE T + +G+  VMKLK+SLY L+ S +++       +  IGF  L +D
Sbjct:   21 KDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSD 173          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 3.750e-33
Identity = 71/153 (46.41%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYE-THDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
            K   V +LVP  S+P G K +G RW  K+KA G+ K+RL+V GW Q  GIDC GT+AP     S   ++AIAAE  Y V  ++V T+FL ++VEEEVYV+ A GYE T + +G+  VMKLK+SLY L+ S +++       +  IGF  L +D
Sbjct:  917 KDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSD 1069          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.140e-27
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHD 327
            K   V +LVP  S+P G K +G RW  K+KA G+ K+RL+V GW Q  GIDC GT+AP     S   ++AIAAE  Y V  ++V T+FL ++VEEEVYV+ A GYE  D
Sbjct:   18 KDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITD 126          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.830e-27
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  106 KSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
            KS   + GW QVPG DC GT AP   L+S R VLAIAAE+++EV  L+V+TSFL AD+EE+V+VKMA G+E  + +G   VMKL  SLY L  S ++W+ T+D  L  +GF  LK++
Sbjct:  325 KSLQELKGWNQVPGKDCDGTVAPVGRLQSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSE 441          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A396GLT1_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GLT1_MEDTR)

HSP 1 Score: 100 bits (249), Expect = 2.240e-22
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIK--ADGL---FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGF 438
            +K   ++LV    +P G+  +GL+W  K K   DG    +K+RLVV G+ Q PG+D   TFAP   + + R VLA+AA+L  +V  L+V+++FL  ++EEEVYVK   G+E     G ++  KL ++LY L+ + + W   +D +    GF
Sbjct:    9 EKNRTWQLV---DLPKGKDAIGLKWVYKTKYNEDGSVQKYKARLVVKGYSQQPGVDFNETFAPVVRMETIRTVLALAAQLELQVFQLDVKSTFLNGELEEEVYVKQPQGFEVEGKEGKVY--KLHKALYGLKQAPRAWNSKIDAYFLQNGF 154          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A151U447_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U447_CAJCA)

HSP 1 Score: 97.4 bits (241), Expect = 4.270e-22
Identity = 54/145 (37.24%), Postives = 87/145 (60.00%), Query Frame = 1
Query:   37 SVPAGQKVVGLRWFNKIK--ADGL---FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
            S+P G+K +G +W  K+K  +DG    +K+RLV  G+ Q  GID + TF+P   + + R +L+IAA  N+E+  L+V T+FL  D+ EEVY++   G +  D++    V K+++SLY L+ + + W   + D L   GF+  K D
Sbjct:   44 SLPEGKKTIGCKWVFKVKHNSDGSIERYKARLVAKGFTQTVGIDYLETFSPVVKMTTIRVLLSIAANCNWELHQLDVNTTFLHGDLREEVYMEPPPGLQLSDST---LVCKIEKSLYGLKQASRQWNIKLTDTLIASGFKQSKVD 185          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A5N6P044_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P044_9ASTR)

HSP 1 Score: 100 bits (248), Expect = 1.090e-21
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   16 YELVPSPSVPAGQKVVGLRWF--NKIKADGL---FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLKTD 456
            +ELV    +P G K +G RW    K+KADG    +K+RLV+ G+ Q  G+D   T++P   + S R VLAIAA  N EV  ++V+TSFL  D+EEE+Y++   G+      G   V KL +SLY L+ + K W    D  + N GF++ + D
Sbjct:  103 WELV---DLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTSFLNGDLEEEIYMEQPEGFSAPGQEGK--VCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECD 249          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A438FKH2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FKH2_VITVI)

HSP 1 Score: 98.2 bits (243), Expect = 6.250e-21
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGL-----FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGF 438
            K   V++LV    +P G K +G +W  K K D L     +K+RLV  G+ Q  GID   TF+P     S R +LA+ A  + E+  ++V+T+FL  ++EEEVY+K   G+ + D  G   V KLK+S+Y L+ + + W+    + +S+ GF
Sbjct:  451 KCNDVWDLV---ELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGF 596          
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Match: A0A438GMM1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMM1_VITVI)

HSP 1 Score: 98.2 bits (243), Expect = 6.310e-21
Identity = 55/151 (36.42%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGL-----FKSRLVVLGWVQVPGIDCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVKMALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGF 438
            K   V++LV    +P G K +G +W  K K D L     +K+RLV  G+ Q  GID   TF+P     S R +LA+ A  + E+  ++V+T+FL  ++EEEVY+K   G+ + D  G   V KLK+S+Y L+ + + W+    + +S+ GF
Sbjct:  374 KCNDVWDLV---ELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGF 519          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig846.19836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.680e-3850.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVC8_9PHAE1.060e-3345.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE3.750e-3346.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLX1_9PHAE1.140e-2750.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUT9_9PHAE6.830e-2752.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A396GLT1_MEDTR2.240e-2237.75Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
A0A151U447_CAJCA4.270e-2237.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6P044_9ASTR1.090e-2140.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FKH2_VITVI6.250e-2136.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GMM1_VITVI6.310e-2136.42Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig846contigF-serratus_M_contig846:127473..127928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score100.9
Seed ortholog evalue5.4e-19
Seed eggNOG ortholog160860.XP_007358330.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs22B2X@155619,38DPC@33154,3H6HR@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932492.2012444-CDS-F-serratus_M_contig846:127472..1279281622932492.2012444-CDS-F-serratus_M_contig846:127472..127928Fucus serratus maleCDSF-serratus_M_contig846 127473..127928 +
1690964335.0529659-CDS-F-serratus_M_contig846:127472..1279281690964335.0529659-CDS-F-serratus_M_contig846:127472..127928Fucus serratus maleCDSF-serratus_M_contig846 127473..127928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig846.19836.1prot_F-serratus_M_contig846.19836.1Fucus serratus malepolypeptideF-serratus_M_contig846 127473..127928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig846.19836.1

>prot_F-serratus_M_contig846.19836.1 ID=prot_F-serratus_M_contig846.19836.1|Name=mRNA_F-serratus_M_contig846.19836.1|organism=Fucus serratus male|type=polypeptide|length=152bp
KKQGVYELVPSPSVPAGQKVVGLRWFNKIKADGLFKSRLVVLGWVQVPGI
DCVGTFAPFCSLRSTRAVLAIAAELNYEVLMLEVQTSFLPADVEEEVYVK
MALGYETHDTSGVLFVMKLKESLYSLRLSLKHWFGTMDDHLSNIGFRLLK
TD
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mRNA from alignment at F-serratus_M_contig846:127473..127928+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig846.19836.1 ID=mRNA_F-serratus_M_contig846.19836.1|Name=mRNA_F-serratus_M_contig846.19836.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig846:127473..127928+ (Fucus serratus male)
AAGAAGCAGGGCGTCTACGAGCTGGTGCCTTCACCCTCCGTCCCTGCGGG ACAAAAGGTGGTTGGCTTGCGCTGGTTCAACAAGATCAAGGCGGACGGCC TCTTCAAAAGTCGTCTGGTAGTGCTGGGATGGGTGCAGGTACCCGGGATC GACTGCGTCGGTACCTTCGCACCCTTCTGTAGCCTGCGAAGCACCCGCGC GGTGCTGGCCATTGCGGCCGAGCTCAACTACGAGGTGCTTATGCTGGAAG TGCAAACATCGTTCCTCCCCGCTGACGTCGAGGAGGAGGTCTACGTCAAG ATGGCTCTCGGCTACGAGACACACGACACGTCTGGAGTTCTGTTCGTGAT GAAACTTAAGGAGAGTTTATACAGTCTTCGACTGAGCCTCAAGCACTGGT TCGGTACCATGGACGATCATCTCTCGAACATCGGCTTCCGTTTGCTCAAG ACGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig846:127473..127928+

>mRNA_F-serratus_M_contig846.19836.1 ID=mRNA_F-serratus_M_contig846.19836.1|Name=mRNA_F-serratus_M_contig846.19836.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig846:127473..127928+ (Fucus serratus male)
AAGAAGCAGGGCGTCTACGAGCTGGTGCCTTCACCCTCCGTCCCTGCGGG
ACAAAAGGTGGTTGGCTTGCGCTGGTTCAACAAGATCAAGGCGGACGGCC
TCTTCAAAAGTCGTCTGGTAGTGCTGGGATGGGTGCAGGTACCCGGGATC
GACTGCGTCGGTACCTTCGCACCCTTCTGTAGCCTGCGAAGCACCCGCGC
GGTGCTGGCCATTGCGGCCGAGCTCAACTACGAGGTGCTTATGCTGGAAG
TGCAAACATCGTTCCTCCCCGCTGACGTCGAGGAGGAGGTCTACGTCAAG
ATGGCTCTCGGCTACGAGACACACGACACGTCTGGAGTTCTGTTCGTGAT
GAAACTTAAGGAGAGTTTATACAGTCTTCGACTGAGCCTCAAGCACTGGT
TCGGTACCATGGACGATCATCTCTCGAACATCGGCTTCCGTTTGCTCAAG
ACGGACAAGAAGCAGGGCGTCTACGAGCTGGTGCCTTCACCCTCCGTCCC
TGCGGGACAAAAGGTGGTTGGCTTGCGCTGGTTCAACAAGATCAAGGCGG
ACGGCCTCTTCAAAAGTCGTCTGGTAGTGCTGGGATGGGTGCAGGTACCC
GGGATCGACTGCGTCGGTACCTTCGCACCCTTCTGTAGCCTGCGAAGCAC
CCGCGCGGTGCTGGCCATTGCGGCCGAGCTCAACTACGAGGTGCTTATGC
TGGAAGTGCAAACATCGTTCCTCCCCGCTGACGTCGAGGAGGAGGTCTAC
GTCAAGATGGCTCTCGGCTACGAGACACACGACACGTCTGGAGTTCTGTT
CGTGATGAAACTTAAGGAGAGTTTATACAGTCTTCGACTGAGCCTCAAGC
ACTGGTTCGGTACCATGGACGATCATCTCTCGAACATCGGCTTCCGTTTG
CTCAAGACGGAC
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