mRNA_F-serratus_M_contig846.19833.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig846.19833.1
Unique NamemRNA_F-serratus_M_contig846.19833.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: D7G4B1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4B1_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 3.320e-94
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            MSYLLPHLR+GWAVDQAIINEE+RVVCLRFGHDHD+TCMQMDEVLAGIAE VKNFCAIYVVDV+EVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQE            MIDIMEVVYRGARKGRGLVVSPKDYSTKYKY
Sbjct:    1 MSYLLPHLRTGWAVDQAIINEEERVVCLRFGHDHDVTCMQMDEVLAGIAEDVKNFCAIYVVDVSEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQE------------MIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 142
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: H3G9C0_PHYRM (Uncharacterized protein n=32 Tax=Oomycota TaxID=4762 RepID=H3G9C0_PHYRM)

HSP 1 Score: 258 bits (658), Expect = 1.780e-84
Identity = 121/154 (78.57%), Postives = 132/154 (85.71%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            MSYLLPHL SGWAVDQAI+NE DRVV +RFGHDHD TCMQMDEVL G+AE VKNF AIYVVD+TEVPDFN MYELYDPCTVMFFFRNKH+MIDLGTGNNNKI+WAFNNK E            M+DI+E VYRGARKGRGLV++PKDYSTKY+Y
Sbjct:    1 MSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDSTCMQMDEVLCGVAEDVKNFAAIYVVDITEVPDFNTMYELYDPCTVMFFFRNKHVMIDLGTGNNNKINWAFNNKSE------------MVDIIETVYRGARKGRGLVIAPKDYSTKYRY 142
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A5D6XYK2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYK2_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.310e-82
Identity = 121/155 (78.06%), Postives = 133/155 (85.81%), Query Frame = 3 
Query:  336 SMSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            +MSYLLPHL SGWAVDQAI+NE DRVV +RFGHDHD TCMQMDEVL+G+AE VKNF  +YVVD+T+VPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNK E            MIDI+E VYRGARKGRGLV+SPKDYSTKY+Y
Sbjct:   86 AMSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDPTCMQMDEVLSGVAEDVKNFAVVYVVDITQVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKLE------------MIDIIETVYRGARKGRGLVISPKDYSTKYRY 228
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A835Z237_9STRA (Mitosis protein DIM1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z237_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.690e-82
Identity = 121/154 (78.57%), Postives = 133/154 (86.36%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            M+YLL HL SGWAVDQAI+ EE+R V +RFGHD+D TCMQMDEVL+GIAE VKNF  IYVVD+++VPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNKQE            MIDI+EVVYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    1 MAYLLAHLTSGWAVDQAILKEEERAVVIRFGHDYDPTCMQMDEVLSGIAEDVKNFAVIYVVDISQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQE------------MIDIIEVVYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A7S3HQX3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQX3_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.840e-82
Identity = 122/160 (76.25%), Postives = 137/160 (85.62%), Query Frame = 3 
Query:  324 NFSYS-MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            NF+ S MSYLLPHLRSGWAVDQAI+NEE +VV +RFGHD D TCM+MDE+L GIA+ VKNFC+IY+VD++EVPDF  MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNKQE            MIDI+E VYRGARKGRGLV+SPKDYSTKY+Y
Sbjct:    8 NFACSAMSYLLPHLRSGWAVDQAILNEESKVVLIRFGHDWDTTCMEMDEILFGIADDVKNFCSIYLVDLSEVPDFTTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQE------------MIDIIETVYRGARKGRGLVISPKDYSTKYRY 155
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A812WHX6_SYMMI (YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812WHX6_SYMMI)

HSP 1 Score: 252 bits (644), Expect = 2.390e-82
Identity = 120/154 (77.92%), Postives = 131/154 (85.06%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            MSYLLPHL SGWAVDQAI+NEEDRVV +RFGHD D TCMQMDE+L  IA+ VKNF  IY VD+TEVPDFN MYELYDPCTVMFF+RNKHIMIDLGTGNNNKI+WAFNNKQE            MIDI+EVV+RGARKGRGLV+SPKDYSTKY+Y
Sbjct:    1 MSYLLPHLNSGWAVDQAILNEEDRVVVIRFGHDWDTTCMQMDEILCNIADDVKNFAVIYCVDITEVPDFNTMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWAFNNKQE------------MIDIIEVVFRGARKGRGLVISPKDYSTKYRY 142
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A7S2HED9_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2HED9_9STRA)

HSP 1 Score: 249 bits (636), Expect = 4.060e-81
Identity = 118/154 (76.62%), Postives = 131/154 (85.06%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            MSYLLPHL++GW+VDQAI+NEEDRVV  RFGHD+D  CMQMDEVL GI + VKNF  IYV+D++EVPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFN+KQE            MIDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    2 MSYLLPHLQTGWSVDQAILNEEDRVVVCRFGHDYDPVCMQMDEVLCGIVDDVKNFAVIYVIDISEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNSKQE------------MIDIIETVYRGARKGRGLVVSPKDYSTKYRY 143
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A7S3SL24_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SL24_9SPIT)

HSP 1 Score: 247 bits (630), Expect = 1.320e-79
Identity = 118/155 (76.13%), Postives = 131/155 (84.52%), Query Frame = 3 
Query:  336 SMSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            +MSYLLPHL SGWAVDQAII+EE RVVC+RFGHD+D  CMQMDEVL  IAE VKN+C IY+VD+TEVPDFN MYELYDPCTVMFF+RNKHIMIDLGTGNNNKI+WA ++KQE             IDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:   41 AMSYLLPHLNSGWAVDQAIISEEARVVCIRFGHDYDPICMQMDEVLYSIAELVKNYCVIYLVDITEVPDFNTMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWAIHDKQEV------------IDIIETVYRGARKGRGLVVSPKDYSTKYRY 183
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A0M0JAP0_9EUKA (Thioredoxin-like protein 4a n=2 Tax=Prymnesiales TaxID=73028 RepID=A0A0M0JAP0_9EUKA)

HSP 1 Score: 244 bits (624), Expect = 2.610e-79
Identity = 117/154 (75.97%), Postives = 131/154 (85.06%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            MSYL+PHL +GWAVDQAI++EEDRVV LRFGHD+D TCMQMDEVL GIAE VKN+  IY+VD++EVPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WA  +KQE            MIDI+E +YRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    1 MSYLMPHLNTGWAVDQAILSEEDRVVVLRFGHDYDPTCMQMDEVLYGIAELVKNYAVIYLVDISEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAIPDKQE------------MIDIVETIYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Match: A0A6S8YQP1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8YQP1_9STRA)

HSP 1 Score: 244 bits (623), Expect = 3.710e-79
Identity = 115/154 (74.68%), Postives = 130/154 (84.42%), Query Frame = 3 
Query:  339 MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAEQVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 800
            MSYLLPHLR+GWAVDQAI+NEEDRVV +RFGHD+D  CMQMDE L+ IA++VKNFC +Y+VD+TEVPDFN MYELYDPCTVM FFRNKHIMIDLGTGNNNKI+WA  N QE            +ID++E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    1 MSYLLPHLRTGWAVDQAILNEEDRVVVVRFGHDYDPVCMQMDEALSKIADKVKNFCVVYLVDITEVPDFNTMYELYDPCTVMTFFRNKHIMIDLGTGNNNKINWALTNTQE------------LIDLIETVYRGARKGRGLVVSPKDYSTKYRY 142
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig846.19833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B1_ECTSI3.320e-9488.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3G9C0_PHYRM1.780e-8478.57Uncharacterized protein n=32 Tax=Oomycota TaxID=47... [more]
A0A5D6XYK2_9STRA1.310e-8278.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A835Z237_9STRA1.690e-8278.57Mitosis protein DIM1-domain-containing protein n=1... [more]
A0A7S3HQX3_9STRA1.840e-8276.25Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812WHX6_SYMMI2.390e-8277.92YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A7S2HED9_9STRA4.060e-8176.62Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A7S3SL24_9SPIT1.320e-7976.13Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A0M0JAP0_9EUKA2.610e-7975.97Thioredoxin-like protein 4a n=2 Tax=Prymnesiales T... [more]
A0A6S8YQP1_9STRA3.710e-7974.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig846contigF-serratus_M_contig846:105470..115012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue1.6e-74
Seed eggNOG ortholog2880.D7G4B1
Preferred nameDIM1
KEGG koko:K12859
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005681,GO:0005682,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG3414@1,KOG3414@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-02_002020.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons3
Model size807
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig846.19833.1prot_F-serratus_M_contig846.19833.1Fucus serratus malepolypeptideF-serratus_M_contig846 105474..114674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932491.95819-UTR-F-serratus_M_contig846:105469..1054731622932491.95819-UTR-F-serratus_M_contig846:105469..105473Fucus serratus maleUTRF-serratus_M_contig846 105470..105473 -
1690964334.9666939-UTR-F-serratus_M_contig846:105469..1054731690964334.9666939-UTR-F-serratus_M_contig846:105469..105473Fucus serratus maleUTRF-serratus_M_contig846 105470..105473 -
1622932492.0536218-UTR-F-serratus_M_contig846:114674..1150121622932492.0536218-UTR-F-serratus_M_contig846:114674..115012Fucus serratus maleUTRF-serratus_M_contig846 114675..115012 -
1690964335.0095837-UTR-F-serratus_M_contig846:114674..1150121690964335.0095837-UTR-F-serratus_M_contig846:114674..115012Fucus serratus maleUTRF-serratus_M_contig846 114675..115012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932491.9781747-CDS-F-serratus_M_contig846:105473..1055691622932491.9781747-CDS-F-serratus_M_contig846:105473..105569Fucus serratus maleCDSF-serratus_M_contig846 105474..105569 -
1690964334.9795487-CDS-F-serratus_M_contig846:105473..1055691690964334.9795487-CDS-F-serratus_M_contig846:105473..105569Fucus serratus maleCDSF-serratus_M_contig846 105474..105569 -
1622932492.0039442-CDS-F-serratus_M_contig846:111674..1118481622932492.0039442-CDS-F-serratus_M_contig846:111674..111848Fucus serratus maleCDSF-serratus_M_contig846 111675..111848 -
1690964334.989584-CDS-F-serratus_M_contig846:111674..1118481690964334.989584-CDS-F-serratus_M_contig846:111674..111848Fucus serratus maleCDSF-serratus_M_contig846 111675..111848 -
1622932492.0340054-CDS-F-serratus_M_contig846:114479..1146741622932492.0340054-CDS-F-serratus_M_contig846:114479..114674Fucus serratus maleCDSF-serratus_M_contig846 114480..114674 -
1690964334.9996479-CDS-F-serratus_M_contig846:114479..1146741690964334.9996479-CDS-F-serratus_M_contig846:114479..114674Fucus serratus maleCDSF-serratus_M_contig846 114480..114674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig846.19833.1

>prot_F-serratus_M_contig846.19833.1 ID=prot_F-serratus_M_contig846.19833.1|Name=mRNA_F-serratus_M_contig846.19833.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MSYLLPHLRSGWAVDQAIINEEDRVVCLRFGHDHDMTCMQMDEVLAGIAE
QVKNFCAIYVVDVTEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNN
KISWAFNNKQEARTHFNYETPILMIDIMEVVYRGARKGRGLVVSPKDYST
KYKY*
back to top

mRNA from alignment at F-serratus_M_contig846:105470..115012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig846.19833.1 ID=mRNA_F-serratus_M_contig846.19833.1|Name=mRNA_F-serratus_M_contig846.19833.1|organism=Fucus serratus male|type=mRNA|length=9543bp|location=Sequence derived from alignment at F-serratus_M_contig846:105470..115012- (Fucus serratus male)
CGTTTAACAGGCAACGTCTCCGGCATTCCAACCTTCAACCCTGTGAAGAT
CGCAGTAGCGGAGCCTTGTACCCGTACCCAAAATAAAAACGCTTCCGGTT
TGGGTTCGAAACCCTGAATAGACGCGACGTTCAACCCACCAACACGCTTG
TGCTGAGGCTGGAGCACACCGCAGGGGGGATCAAAGCAGTGGTAGGAAGG
GAGTTGAGATTTTCTGAGGAAGTCCTTGGCGAGGTTTGGCCGAAGACGGA
GCGATCTCTTATTCGAATCTGAAGTCGATTCTATACGCACTACAAGTTGG
GATTACGGCGCTTCTGTACACCTAATTTTTCTTACAGCATGTCGTATTTG
CTACCCCACTTGAGGTCCGGCTGGGCGGTTGACCAGGCAATCATCAACGA
GGAGGATAGGGTTGTCTGCCTCAGGTTCGGCCACGACCACGATATGACGT
GCATGCAGATGGACGAGGTCCTTGCCGGCATCGCGGAGCAGGTGAAGAAC
TTCTGCGCCATCTACGTGGTGGACGTCACCGAGGTGAATGTACTGTATTT
GTAGGCAGAAGAGTGCCTCCGCGCGCGGACCGTTCCAATTGGCGGGGTGA
GACAAGGCTTCCCGAACTGATGCCCGTACGTTTGCTTGCTTTTTGATCCA
CCTCGCGGACCGGCGGCGGAAAGATAAGCCGAAAAGATGACTGCATGAAT
AAATAGCTTTGTGCTTCGGAGGGAGCAGGAGCACGTGCGCGCCGATGGTG
TTGCGACACCCCGCTACAGACAGTAGCTTGTTGTGTTGGTCCCACGAATC
GATAGATACCCTGATAGAGCAGTAACGACACCACGGCAGCGGTACACTGC
AATACAGTGTACTTGTCCTGTACCATTGTACTGCTATATATCTGTAACGG
ACCATACATCGATACTACAGCACTACGCTATGTATGTATGTATGTATGTA
TAGCTCTAGTCGCTCTAGTCATACCTACAGCAAGAGTATGGATCAACCGG
GTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGAATAT
TTCCGTGTCTCCGTGCGCGCCCGAGAATTTAGTCTAGCGAGACGGTTTCG
ACAGTCCCGTCCCGTGTCAGCCTGCTGATCTCTATACTCAGGCTGAATTT
GGAGCTTACTCACGGGATTCTTCCCGAGTTCCGCGGCGGCGTCCATTTAC
TCATTTAAAACCGCCTATACGCCATCGGGTCAGTCCCGAGTTCATCGGGT
CACGCAATTACGTATCGATGGCGTTCACTGCCGAGAGTCCGCTGGTACAA
CATGGCCAGTAAACCTTAAGGTAGTTCCGAACGAGTGCTGCGTGACAGGT
CACCATGGACCAATTCATATGCGCCTCTCTTTCCCACACCTTACGCCCGA
GTGGTGTACATATTGCACTTTTAATAGTACAGTGGTGTACTTATTGCACT
GGTACAATGGTGGATAACCTCGCAGTTCACGACAGGTTGCGGATTTCGCG
AGTTCGAACCCTGACATGATGATGTCTTTTAGGGTTGCCGTACTGGTAGC
GGAAAGCGAGAGAACGCAAGTGAGTCCTTGGTTGAAGAAGTATAAGAGAA
CTGAACTTGCATGCTGGTCGCCCCGGTGGTTCAGTTGGTAATCTCGAAAC
CCCCTAACGTTGGGACACGAGTTCGAATCTCGGTGCAGTCACACGAACTG
GGAGTGGAGAACGATTAGTTCGTGGGCACACACAATTCGACATCACAATC
GACGAGGGAAAGAGACGGCTGAATCTTTCTCGCGATAAAAATTAAGGCAA
GCACCGCAGAAGGAAGGCGGAGAAATCCTGTGTGACCTTCCTCCTGTGTG
ACCCCGGCTGGTGCGTCCACAAGTCGGACGTCAAAAATAAATGGGATGAC
AACACACACAGAGATATCGCGATCAAAAATCGTACCAGTAAGCGACAACC
ACGGAGAGTTCGGAAGATTATTAGGGGTCATAGAGGGGATGACAGCGTTG
CAGGATGTATTTATGGTCATCACATCAAGCACAGTAGGAATCAACCGGAA
AACGTTGCCAATCCTGCTCGTGACGATGGTGGGGTCAGATGAAACGGGAG
GGAGCGAAAAGTCCTACAATGATTGAACCGCCGATGCTTTCAACAAGCTC
ACTTCATGCCAATAGTGGGTGTGGGAAAGAGAGGCGCATATTAATTGGTC
CGTGGTGATGCAAAGGCAGCACCCGTTACTGGAACTACCGTGAGGTTTGA
TGGCCCTGTGCCGGTGGACTCTCGGCAGTGAACGCCATCGGTAGACCCGA
TAAACTCGAGACTGACCCGATGGTGTACGGCGGTTTTAAATAACTAAGTG
GACGCCGCCACGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGGTTCA
GCATGAGTATGGAGATGAACAGGCTGACGCGGGACGGGACTGCCGAACCC
GCCTCGCGAGACTAAATTCTCAGGCGCGGACGAACGGATAAAATTCCCTG
TTCAGCTGGCCACGAGCAGGATTGGCAACCATACCTCGTTGATCCTTACT
CTTACTATATGTGATGACCATGGGGACGTGAAGCTCCACTGGTACAAACC
GCGTAGCTTTCTAGTAGTCCAGAATGTGAAATACAGCCTACAGAGAACAA
AGCAGTAGAGTGGTAATAGTACCGGTACTATAGTTGTATTTATAGGTAGA
TGATGATACACTACTAGTAGCAAATCTGGAGGTCAAGAGTTCTCAATCGC
TTAGCATAATTGAAGCAATTACTGTTGTCCCCCAACCTTGGCGAAGAGGG
ACCCGGGGACAAACAAGTGAGATGTTATTATCATAACATGAAGGCTGTAC
TTTATCCTCCAAGTTATAGAAAGACGACTCTGGTGTTTCGTGTCACATCA
GCTCTCTCGTCTAACCGACTCAGTCAGACGCGGACGAAAATAGCGCGGGG
CGAGAAAAACGCATGGCTCGACGATGCTCCGTGCTGTGACCATCGATCAG
AGCCCGTGGGATGTATCGAGCGCTTCGGCTTCCTTCGGCCCGTTGGGCAC
CGGCGTGAGGTGTGGGTGTGGCGAACAGTCTGTTACCATCACACACACGC
ACGTCCGTTTTTCGTGACTATCTTCCCCCTTTCCACCCCCTCCCTTGACC
CATCTCCCTCGCAGGTGCCGGACTTCAACGACATGTACGAGCTGTACGAC
CCCTGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGACCT
GGGCACGGGCAACAACAACAAGATCTCCTGGGCGTTCAACAACAAGCAAG
AGGCGAGAACGCATTTCAATTACGAAACCCCGATCCTGGTTTACGCTCGT
GGTGGTAGTGTTTGTACTCTGATGGACACAGTAGAGTACGTAGGACTTTC
TAATGTAGCTGGGCGTGAAATCCCCCCCCCCCCCCCCATAAAGCCTCATC
CATGCCACAAAGTTCTGCACCTTGAATTACCGTTGCGTGCGCCTTCCAAC
CTTTAAATATCTTACGTTTTGTTTCATTCTTCTCCCAAGATGTTTTGAAA
AATCGAATCCTTCCCATGCAAACTCTATATCCAAAAGATGCGCTTGGTTC
TCACAGATACTTCACTCTAGCTTTCCCTGAAAATATCGCCTCCCTCGGAG
CCGGCGCCATGCCACTATAGCGGTGGCGATGCTTAAGGGTCGACACGAAG
TGCATAAATGACACACAGCGTCTTCAACAACTGTCGGGAATGCCTCAAAT
TCAGTAAGGTTACACCCTGCGCCACCAAAGCCTCAACAGACGCACCGTGA
TGCGCGACCAGACAGGTCATACACGTGCTACGCATCCCGAACTTCTGGGT
CAACGCCAACCGTGTCCGTGTGTTGGGCCACTTTTTTCAGCCCCCTGACC
ATGTACTGCGAAGTATTCGCACCCATTTTGCCTACCCAAGAGCGCTTCGC
TCACTCCGAGTCCTCTTGTGCAGTATCAGATCTACGCCTACGCTGCGTGA
GCATGCTGCTCGCCCAGGCGTTCTTTGCCCATTGTGAGAGTCGTGGGCAT
CCCGTGCCGTTCTTCCCCCGGTCCGTCTTGATCTCGACAACATCTCGCTC
TCGTGACCCAACCACCAGAGTCGCGCCGCTATCGCCAGAGTCGCGCCGGT
GTTAATGAAGATCGTCTCACCCTTGACGATATCCTGCAGCTCGTGCACTT
GCCGAGATCCTCCCGACATTTTGATGTACTGATTGGTTGAAATCTCACAT
AGGCTGATGTAAAGAATCCAGCCCGTGGTCTCAAGGTAAAAAAGCACAAC
TCGGAAGGAAAAAATGTACGACCTCCTCTCCATACTATTAACAGTATAAA
GAGAAAACGGCAATGGTACAAAAAAATACTCGGAAAAAGCAACATCTCCA
AATAAACAAAAGAAAAAAAGAAAAAAGAAAAAAAGAAAAAAACACGTCTG
GCTATCGGGGCACCTGCAGATCGAAGGACGATTGAACAAAGGGCCGCGGC
TCCAACGAAAGCATACATACGAAAAGAAGTAAAACAAAATAAAGGTAACG
CCAGAGAAAGACGTCATAACATCTGCAAACCAAAGGCCCGGAAGATACAA
GTTCGCGCCACTTATGGCTAGTCAACAAGGGCGAGCGAACCATCACGAGC
CCGCTTGCTTTGGGCAATCCTCTCCTTGGTCGTTTCCGTCGCGCTCGGGC
ATACGAGTGCATGTCGTAGTCCAGCCCTGGATTTCTCTGCTGCGAGCCAT
TCCGCCATGAAATGTTCCGCCCTTTGTTCCGCCGTTCTGCGCCATTCCCC
CTCGTCCTGGGCTGCAGTCGTCCACTGGTCGGCGTTGATGCCGAAAGCTC
TGAGGTCGTTCAGGAAACACCCCATCCACTATTTTTCCTGGCCCCCCATA
CAGCCCTCGCCCCCCGCCGATTTTCCGAACATCAGGCACTTTGGCGATCT
TGTATCGTCCCGAGCACATCATGAGTCACGGCCCAGCCCACGTTACCTCC
AGCGTTGGCTCGATGCCTAAATTTCCGAACACGCGCCGTCGAAACATGCT
CACCAGGAGGCTCGAAAACCGGTACGGCGGTTATGTGCCAAACTCTTCGA
TTCGCGCCTTAATGATAGGCGTTGTGTCTGTTCGTGCGCTTGCATCCCCG
GCCAAATCTTTTCTAGCGCGTGAACCTATATCGCGCTATCGTCCCGCGCT
ACCAATCGGGCGACGTGCTCAATTCACCCCCGGTCCATCCATAACCGTCT
CGATCAACCGGTTGGTCTTCCGTCGCGGCGTCCGGCCTGGCCTCTTACGT
GCCCTGCCCTCGCTCGGCATCGGGGCAACCCTCGGTCGATCGCTTCGATG
GCGCGTATCCGTTCTATCGAAATTCACGGGGTCATCCTTGGCAACCCCCC
GTGACCGACCGGAATTTCGAAAAGCGGATCACCCCAGGGATTCTATCTTG
TCCCCGCCTGGGTGATCAGGTTATCGTGTACAGTTCTAATTCAAAGTAAT
TCCTGTACGTCCGCCATTCGAGAAGGCCCCGCGAAGCACAGAGTATGACG
GTTCAGCTATACAAGCTCGCGGGAATGAGAAAATATTTGGCGAGATTACG
ATCACTGTTGGAAATACCCGCGCCTGCGTACATGTGTATGCACGGTGATA
AATTACCACTCCCCTCTCCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTGC
TCCTGCTCCTGCTCCTCCTCCTCCTCCTCCTTCTCCGGGGTGCGGGCGGA
AACGTCAGCGCCCCCCGCCCCTTTCCTTCAACTCAGTTTTGCCGTACTAT
AGAGTTAAACTATCATCTTAGATTGAGGTGATGCAGCTCTCGCTAGTCGC
TCGTAATGTTGATAGCTCAGTTAGTTGCTATTGTCAGTTCGGTGTGCGCC
GGGAATGTTTTCGCTGCTCCTGCTGCAGTTCCCGATTTTATGCTTCTCGT
ACTGTTTGTACTGCTCATGCTTCTTTTGATGCTACTGGGGCGATTGTATT
TGCTGCTGGGGCTGCTGGGGCTGCTGGGGCGCCAGCTGCTGTTATTTGTT
CTAGCCGCCGCTGGTGCTGCTGAGGCTGCTGAGGCTGCTGCTTCCATTGT
GGATGCGCAGCGATTCGTCGTCACTCGCCGCTGGCGACGGCGGCGCATTG
TGCACCCTAGTTAGCACTTTGCGAAGATTTGCCTTCGCCGGAAGCCACTC
TCCATCGTGTTCACGCCTTGCTCGTTTTCTCAAGCCGCCCTTGAGGTCCG
TCTACTACTTGGACTTTTGGAGGGACTGTCGCGAGGGAGATGCTGGTTTT
GTCCCGCACAACCTTACAGGACACGATGTAGAACCGGGGACGCATTTGGT
GGTCGAAATCCCTTGCTCTCCTCGCCGTTATCACCCGGCTGCCCTTGACA
AATGTTGTGACCCAATGAGCGTTTGGTGAAGACACCATCAAACCGAGGAA
ACGACTCGCCAATATAGCGTTAGGCTGGTGTGCCTACGAATTCGCAGAAA
AAGCTTGTTGTCGCATTTGTTTTCCCCCCCTTTTTTTTTTAACAAAAATC
TGAACGTATCCAAACCTTCTGAGCACCCAGTCAGGGAGAAAGATGTCAAA
ACGTTTAGGTGGGAAATTGGCTGTAGGAGCAAAATCAATTCGTGGGATTC
AATGGGTTCTCCAATGTTGTAGAATAGAGTCAATAGTATAATATCGAGGA
GAAACTCACCGTTATACTAGATATACACTTAAGCAATCGCCATGCAGGGA
CACCAAAACAAAGGCAAAAGCGCACCATGAACCTGAATACACATTGGCTT
AGTTACGTTATATCGGGTTTGAGGTCGGGTTAGAGTATAGGTGAATTTGG
GTCGATTGTTAAATAGTCGCGCAGGTATCAACACTATCAGCTATATAATT
TAGTCCAGATAATTAGTCCAGATAATTTAGTCCAGATAATTTAGTTCAGA
TAATTTAGTTCGGATAATTTAGTTCAGATAATTTAGTTCACATAACTTAG
TTCAGATAATTTAGTTCAGATAATTTAGTTCAGATAATTTAGTTCAGATA
ATTTAGTTCAGATATTTCAGTTCAAATAATTATCAGGTAAATCTAGCTAC
AACAAAAACAGACTGTGAAAGGAGAAACAGAGAGAGTGGAAAAGGCAAAT
TGTGTCTACGAATATCTTGGCGGTATAAACGGTACAGGGGTTTTAAGTAG
GCGGAGGTTAGAGGTACGATGAGCTTCACACTACGTATTACAATTGTGAC
AGCAGGAAGAGTAAGGTATAGGACTATGACAGCTAGCGGTAGTGGTAAAC
ACAAAGGGTTTGGGTTAAGGAGTAGAGGAGGGGCAGAGAGGACCACCATC
GCAGATGTCTTCAACATAATATAGAAAAGTACAAGACACCAGTATTCACC
TGAAAGTAGACGAAGAGCATCTTTGTTTTTAATTCCGCCGCATTTTTGGG
ATTTCCTCCTTTTTTCTTTCTTTTCGTTTCGCCGCATTTTTGGAATAAGG
CTCATGAACCTCTAGGAAGAAAAGTGTTGTATTTGCAGCCTATGATCCCA
CCTAAATGTTTTGACATTTTCCCCCCTGATTGGGTACAGTATAGTACAGT
ATGACATCTCAGAAGGAAGGTCTAGCTAGATGCGTTCAGATTTTTCTTTA
AAAGTATTGTATTTTGTCGAGATCAAGGGGGCTCCCACAGGTCAATGATT
TGAAAACCCACTTTTGTATGGCTTCAAACGCCAATTTCGCAAGGCCCCAT
GACACGATGTAGATGGGGCTCGCGAACGCTCGCCGAAGGAGATCGTCGGC
CTCGAGAGATCCCGGCGAAGGCGTGGGCGGAGATCGCTATCGCTCGGGGA
AGGATCTCGCCATCTGCCGCACGAGGCGGCTCAGAAGGTCGCTTTGCTCG
TGGTTGTTGAAGTATCAAGTTACGAGTGCTGCTGTATGCGGCGGCGTTGG
GAAAAGAACGATATCTCCGTCAGTCACATGGCAGGAGAAAACCAACAGAC
ACCTCCCGATTCTCCTGTGAATGAATGAAAGGGGTAGGACGGCTGTACAC
AAGGGAGCGTTCTGTCCTTGTTTTACGATCCATCTTTACTGTAAAAGCAG
AGGGAAAGTGCGGACATGTGTACCGCGAAGGCGAAACCAAACGGTTTATC
GAGGGCGATGAATGCGGTCCTTCTCACGGTCGGCCGGCGACTTGATTGGC
TGTCTACGAAAGGTTGCCTGTACTGCTTCCCACGGCTGAGATAATTCAAA
AGCCGACCCCCATCCCCTCGAATAAGATCGCACAAAGAACAAAGGACGAC
TGATGAAAGCACAAGCATTTCACTAACCATATCCGTTTCGCGAGCCAATC
CATTTGATGAGCCTTAACCCATTTCACGAACCATATAAATTGTACAAATC
ATGACACTTCTCGAAATATAGTCATTTCGGTAGACATAGTCGTACCGGTA
ATCAAACCCATTTCAGCGATCATTTACTTTACACTGACCGAAGCGGTTTC
ACTAGCCTAGCCATTTCACGAGCCATGTCCATTTCACTAATCATACCATT
TCATGAACCACAGCCATTTCATTAAATCAAACCCATTTCAGCGATCATTT
AGTTTACACTGACCGAAGCGGTTTTTCACTAGCCTAGCCATTTCACGAGC
CATGTCCATTTCACTAATCATACCATTTCATGAACCACAGCCATTTCATT
AACCATATTGTTTCCACTAACCATGTCCTTTTTCGCTGAAACCGTCAATA
TGTCATTAACCAGCCGCATTCCACGAACCAACTCATTCCACTCATCGCAG
CTAATTTATTTACGAGCAATTTCACTGTACAAACTATTCTAACCATATCT
GCTTCACTACCTTTTAAATATAGCCATTCCAGTAACCATGACCAACGATT
CCACTAACCACGACCAACGAATCCACTCTAAGCAAGACCAATCATTCCAA
AAGAGCTAATTATGACCCTTTCATAAACCATGGCAGCTGGCTAGCAGCTC
AACGTTTAACCCCGTTGACTCTTAATGCGGGTTCGAGACGTGTCGAGTTG
AACTCTTGCGTTCTGGTTTCCGCGGCGGAAAAGCATCATCAAAAGTAGGC
AAATGCCAACCATTGATTTGACAACCTGTCGAGAGTGCTGAACTTGCATC
GCGATATAAATCATTCGAAAAGGCGTTAACCGTGGAGAGAGGGGTAACTC
TAGATCCTCAGTGACCACAGGACCACAGGTGGGATGTCAACGTCGCGGTG
TGTGGGTTTGTTCATCTAATAGACTACATTGCTAGCGCATTGATTGGGTC
CATCGTTAGAACTCTGACGAAAAATAAAATAAAATGTATAAACTCCAGCT
CCCCCCAACATCTTATATGCATCCCACCGCTTACCCCTCACCTCCAACCG
CCCGCACCTTTCGTTACCCATCCCACTGCTAACCCCGCCGCAGATGATCG
ACATCATGGAGGTGGTTTACAGGGGCGCGCGAAAGGGTCGAGGTCTCGTG
GTCTCCCCCAAGGACTACTCCACCAAGTACAAGTATTAAAATC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig846:105470..115012-

>mRNA_F-serratus_M_contig846.19833.1 ID=mRNA_F-serratus_M_contig846.19833.1|Name=mRNA_F-serratus_M_contig846.19833.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig846:105470..115012- (Fucus serratus male)
ATGTCGTATTTGCTACCCCACTTGAGGTCCGGCTGGGCGGTTGACCAGGC
AATCATCAACGAGGAGGATAGGGTTGTCTGCCTCAGGTTCGGCCACGACC
ACGATATGACGTGCATGCAGATGGACGAGGTCCTTGCCGGCATCGCGGAG
CAGGTGAAGAACTTCTGCGCCATCTACGTGGTGGACGTCACCGAGATGTC
GTATTTGCTACCCCACTTGAGGTCCGGCTGGGCGGTTGACCAGGCAATCA
TCAACGAGGAGGATAGGGTTGTCTGCCTCAGGTTCGGCCACGACCACGAT
ATGACGTGCATGCAGATGGACGAGGTCCTTGCCGGCATCGCGGAGCAGGT
GAAGAACTTCTGCGCCATCTACGTGGTGGACGTCACCGAGGTGCCGGACT
TCAACGACATGTACGAGCTGTACGACCCCTGCACGGTGATGTTCTTCTTC
CGCAACAAGCACATCATGATCGACCTGGGCACGGGCAACAACAACAAGAT
CTCCTGGGCGTTCAACAACAAGCAAGAGGCGAGAACGCATTTCAATTACG
AAACCCCGATCCTGGTGCCGGACTTCAACGACATGTACGAGCTGTACGAC
CCCTGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGACCT
GGGCACGGGCAACAACAACAAGATCTCCTGGGCGTTCAACAACAAGCAAG
AGGCGAGAACGCATTTCAATTACGAAACCCCGATCCTGATGATCGACATC
ATGGAGGTGGTTTACAGGGGCGCGCGAAAGGGTCGAGGTCTCGTGGTCTC
CCCCAAGGACTACTCCACCAAGTACAAGTATTAAATGATCGACATCATGG
AGGTGGTTTACAGGGGCGCGCGAAAGGGTCGAGGTCTCGTGGTCTCCCCC
AAGGACTACTCCACCAAGTACAAGTATTAA
back to top