mRNA_F-serratus_M_contig846.19841.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig846.19841.1
Unique NamemRNA_F-serratus_M_contig846.19841.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: D7FUK2_ECTSI (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.780e-32
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 2
Query:    2 ALAPVRRLNDHLSKRARHLLEERTRRLGDV---GGEGRSATGDSGSCSFNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTEPE 298
            AL  V  LN+ L +R+  LL  R  R G     GGEG     + GSC FNVALINRMEPS+ RPDLKLEPTFG+DRCSVSWHADSCLEH+S+IAVYHVT+PE
Sbjct:  177 ALRRVGLLNNKLKERSLRLLRARGGRKGKARREGGEGN----EFGSCEFNVALINRMEPSDDRPDLKLEPTFGQDRCSVSWHADSCLEHYSSIAVYHVTDPE 274          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A836C862_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C862_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.110e-20
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  137 FNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTEPE 298
            F VALINRMEP+  RPDLK EP +GR+R SVSWHADSCLEHFSTIAVYH T+ +
Sbjct:  205 FTVALINRMEPASLRPDLKAEPLYGRERLSVSWHADSCLEHFSTIAVYHQTDAD 258          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: D7FUI9_ECTSI (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUI9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 7.150e-20
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    5 LAPVRRLNDHLSKRARHLLEERTRRLGDVGGEGRSATGDSGSCSFNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTEP 295
            L  V  L++ +  RA  +L+E  R  G          G+ GSC+FN+ LINRME S A+ DLK +P F   +CSVSWHADSCL+ FSTI VYH T+P
Sbjct:  259 LRKVGDLSEWMRLRAGAMLKEEVREAG----------GERGSCAFNLTLINRMECSGAKRDLKPDPLFSMGKCSVSWHADSCLQDFSTIGVYHCTDP 345          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A7S2RU45_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RU45_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.570e-17
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    2 ALAPVRRLNDHLSKRARHLL--EERTRRLGDVGGEGRSATGDSGSCSFNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTEP 295
            AL  + RLN+ L  RA  LL  E++ R+L  VG              FN+ LIN+MEP++    L+ EP FG  +CSVSWHADS L+ FSTIAVYH TEP
Sbjct:  142 ALQALYRLNEELISRAEGLLATEQQRRQLPAVG-----------PTRFNLTLINQMEPTQVEKALRDEPLFGMGKCSVSWHADSGLQDFSTIAVYHSTEP 230          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A835ZL97_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL97_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-14
Identity = 52/105 (49.52%), Postives = 58/105 (55.24%), Query Frame = 2
Query:    2 ALAPVRRLNDHLSKRARHLLEER--TRRLGDVGGEGRSATGDS-GSCSFNVALINRMEPSEA----RPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTEP 295
            AL  +  LN  L +RA     E   T RL        +A G S GS  FN+ LINRMEPS         LK EP FG  + SVSWHADSCLE +STI VYHVT P
Sbjct:  122 ALRQLCTLNAWLRRRAERACAEEGITARL--------AAAGHSPGSFDFNLTLINRMEPSGHGDGYHAKLKPEPIFGMGKASVSWHADSCLEDYSTIGVYHVTTP 218          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A7S2XRF9_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRF9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.470e-14
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 2
Query:    2 ALAPVRRLNDHLSKRARHLLEERTRRLGDVGGEGRSATGDSGSCSFNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYH 283
            A+  V  LN+ L+ R+ H L E  ++       GR A    G   F+V LINRME +    DLK E T G  RCSVSWHADS LE++STI VYH
Sbjct:  205 AVTTVSDLNETLTHRSSHHLSELDKKR-----RGRGAEPTKGRAGFDVTLINRMEGTS---DLKSEVTTGEGRCSVSWHADSSLENYSTIGVYH 290          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A7S3Q6H3_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6H3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.700e-14
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 ALAPVRRLNDHLSKRARHLLE--ERTRRLGDVGGEGRSATGDSGSCSFNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYH 283
            AL  +  LN +L+ R +  L+  E+TR+  +      S     G   ++VALINRM  +   PDLK EPT G+ +CSVSWHADS LEHFS+IAVYH
Sbjct:  218 ALKAISTLNQNLTGRTQTHLKGLEQTRQRRNYS----SHPCIKGRAKYDVALINRMTNA---PDLKKEPTMGKGKCSVSWHADSSLEHFSSIAVYH 306          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: C1E7Q2_MICCC (Alpha-ketoglutarate-dependent dioxygenase FTO n=3 Tax=Micromonas TaxID=38832 RepID=C1E7Q2_MICCC)

HSP 1 Score: 74.7 bits (182), Expect = 1.560e-13
Identity = 48/98 (48.98%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 LAPVRRLNDHLSKRARHLL-EERTRRL-GDVGGEGRSATGDSGSCSFNVALINRMEPSEARP-DLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVT 289
            L  VRRLND + +R+R LL   R  R+ GDV          +GSC FNV LIN MEP       LK E  FG  + SVSWH+DS L+  ST+AVYH T
Sbjct:  178 LRVVRRLNDAMKRRSRALLTRHRDARVPGDV----------TGSCEFNVTLINLMEPERKESVALKDEGQFGMGKASVSWHSDSSLQDTSTVAVYHQT 265          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A7S0SPB0_9CHLO (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SPB0_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 2.940e-13
Identity = 45/98 (45.92%), Postives = 54/98 (55.10%), Query Frame = 2
Query:    5 LAPVRRLNDHLSKRARHLLEERTRRLGDVGGEGRSATGDSGSCSFNVALINRMEPSE--ARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTE 292
            L  VRRLN+ L  R+R LL +          + R     +GSC FNV LIN MEP+       LK E  +G    SVSWHADS L+  ST+AVYH TE
Sbjct:  204 LRVVRRLNEALRARSRKLLRDSP--------DPRVGVEVTGSCDFNVTLINFMEPAHRCTAVPLKEESQYGMGNASVSWHADSSLQDMSTVAVYHQTE 293          
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Match: A0A7S2EEX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EEX7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.300e-13
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 2
Query:    2 ALAPVRRLNDHLSKRARHLLE---ERTRRLGDVGGEGRSATGDSGSCSFNVALINRMEPSEARPDLKLEPTFGRDRCSVSWHADSCLEHFSTIAVYHVTEP 295
            A+  +  LN  L++R  H LE   ++ RR G             G  +F+VALIN+M  +    DLK EP   + +C+VSWHADSCLEH+STIAVYH   P
Sbjct:   47 AVQTIGDLNTTLTERTAHHLENLYDKPRRKGRR---------RRGRAAFDVALINKMIKTN---DLKDEPVTKQGKCTVSWHADSCLEHYSTIAVYHTIFP 135          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig846.19841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUK2_ECTSI2.780e-3265.69Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
A0A836C862_9STRA2.110e-2075.93Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
D7FUI9_ECTSI7.150e-2049.48Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
A0A7S2RU45_9STRA3.570e-1749.00Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A835ZL97_9STRA1.360e-1449.52Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7S2XRF9_9STRA2.470e-1447.87Alpha-ketoglutarate-dependent dioxygenase FTO (Fra... [more]
A0A7S3Q6H3_9STRA4.700e-1447.92Alpha-ketoglutarate-dependent dioxygenase FTO n=2 ... [more]
C1E7Q2_MICCC1.560e-1348.98Alpha-ketoglutarate-dependent dioxygenase FTO n=3 ... [more]
A0A7S0SPB0_9CHLO2.940e-1345.92Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
A0A7S2EEX7_9STRA4.300e-1343.56Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig846contigF-serratus_M_contig846:357504..358068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932491.7593272-CDS-F-serratus_M_contig846:357503..3575871622932491.7593272-CDS-F-serratus_M_contig846:357503..357587Fucus serratus maleCDSF-serratus_M_contig846 357504..357587 -
1690964334.8915486-CDS-F-serratus_M_contig846:357503..3575871690964334.8915486-CDS-F-serratus_M_contig846:357503..357587Fucus serratus maleCDSF-serratus_M_contig846 357504..357587 -
1622932491.7774873-CDS-F-serratus_M_contig846:357849..3580681622932491.7774873-CDS-F-serratus_M_contig846:357849..358068Fucus serratus maleCDSF-serratus_M_contig846 357850..358068 -
1690964334.9029672-CDS-F-serratus_M_contig846:357849..3580681690964334.9029672-CDS-F-serratus_M_contig846:357849..358068Fucus serratus maleCDSF-serratus_M_contig846 357850..358068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig846.19841.1prot_F-serratus_M_contig846.19841.1Fucus serratus malepolypeptideF-serratus_M_contig846 357504..358068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig846.19841.1

>prot_F-serratus_M_contig846.19841.1 ID=prot_F-serratus_M_contig846.19841.1|Name=mRNA_F-serratus_M_contig846.19841.1|organism=Fucus serratus male|type=polypeptide|length=101bp
CPRACPPPERPPLEAREALARGKDPEARRCRRRGSKRDGRFRELQLQRGA
HQPNGAVRGPARPEAGAHVRSRQVFGVLARRLLPRALLHHRGVPRHRARN
E
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mRNA from alignment at F-serratus_M_contig846:357504..358068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig846.19841.1 ID=mRNA_F-serratus_M_contig846.19841.1|Name=mRNA_F-serratus_M_contig846.19841.1|organism=Fucus serratus male|type=mRNA|length=565bp|location=Sequence derived from alignment at F-serratus_M_contig846:357504..358068- (Fucus serratus male)
TGCCCTCGCGCCTGTCCGCCGCCTGAACGACCACCTCTCGAAGCGCGCGA GGCACTTGCTAGAGGAAAGGACCCGGAGGCTCGGCGATGTCGGAGGCGAG GGTCGAAGCGCGACGGGAGATTCCGGGAGCTGCAGCTTCAACGTGGCGCT CATCAACCGAATGGAGCCGTCAGAGGCCCGGCCCGACCTGAAGCTGGAGC CCACGTTCGGTCGAGACAGGTGCGGCATACGTGCATCTAGAGTTACGATG GCGTTTCGGGAGGGAGGAGGTAAGAGTTGGGAAGGAGGTCTCTGATCCTG GACTTTGAAGAAACGTCCCGAGCATGGAGGCCATTGGCATACAGCTGATA AGAAACTCTTTTTCCGCTTGTAGTTCCTCTAGGATGTCGCTCAGAAAAAT GCTTTCGCGATCCGCTGAACCGTTGAGCCTCTCTCACCCTCTCTCGCCGT GCGTGTTTATTTAATTTTTAATTTTAACAAGGTGTTCGGTGTCTTGGCAC GCCGACTCCTGCCTAGAGCACTTCTCCACCATCGCGGTGTACCACGTCAC CGAGCCCGAAACGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig846:357504..358068-

>mRNA_F-serratus_M_contig846.19841.1 ID=mRNA_F-serratus_M_contig846.19841.1|Name=mRNA_F-serratus_M_contig846.19841.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig846:357504..358068- (Fucus serratus male)
TGCCCTCGCGCCTGTCCGCCGCCTGAACGACCACCTCTCGAAGCGCGCGA
GGCACTTGCTAGAGGAAAGGACCCGGAGGCTCGGCGATGTCGGAGGCGAG
GGTCGAAGCGCGACGGGAGATTCCGGGAGCTGCAGCTTCAACGTGGCGCT
CATCAACCGAATGGAGCCGTCAGAGGCCCGGCCCGACCTGAAGCTGGAGC
CCACGTTCGGTCGAGACAGTGCCCTCGCGCCTGTCCGCCGCCTGAACGAC
CACCTCTCGAAGCGCGCGAGGCACTTGCTAGAGGAAAGGACCCGGAGGCT
CGGCGATGTCGGAGGCGAGGGTCGAAGCGCGACGGGAGATTCCGGGAGCT
GCAGCTTCAACGTGGCGCTCATCAACCGAATGGAGCCGTCAGAGGCCCGG
CCCGACCTGAAGCTGGAGCCCACGTTCGGTCGAGACAGGTGTTCGGTGTC
TTGGCACGCCGACTCCTGCCTAGAGCACTTCTCCACCATCGCGGTGTACC
ACGTCACCGAGCCCGAAACGAAGTGTTCGGTGTCTTGGCACGCCGACTCC
TGCCTAGAGCACTTCTCCACCATCGCGGTGTACCACGTCACCGAGCCCGA
AACGAA
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