mRNA_F-serratus_M_contig8439.19817.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8439.19817.1
Unique NamemRNA_F-serratus_M_contig8439.19817.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8439.19817.1 vs. uniprot
Match: D8LFX5_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX5_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-5
Identity = 19/38 (50.00%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:    2 TKTAEYCSQHTLDGMVDICSRKCNTESCRKQPSFGVAG 115
            TK A++C+QH L GMV++ + +C TE C+K+P+FG+ G
Sbjct:   21 TKRAQFCAQHRLGGMVNVLAPRCETEGCKKRPTFGIPG 58
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8439.19817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFX5_ECTSI4.870e-550.00EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8439contigF-serratus_M_contig8439:1002..1879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size578
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8439.19817.1prot_F-serratus_M_contig8439.19817.1Fucus serratus malepolypeptideF-serratus_M_contig8439 1045..1413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932487.465626-UTR-F-serratus_M_contig8439:1001..10441622932487.465626-UTR-F-serratus_M_contig8439:1001..1044Fucus serratus maleUTRF-serratus_M_contig8439 1002..1044 +
1690964332.9419434-UTR-F-serratus_M_contig8439:1001..10441690964332.9419434-UTR-F-serratus_M_contig8439:1001..1044Fucus serratus maleUTRF-serratus_M_contig8439 1002..1044 +
1622932487.506309-UTR-F-serratus_M_contig8439:1413..14171622932487.506309-UTR-F-serratus_M_contig8439:1413..1417Fucus serratus maleUTRF-serratus_M_contig8439 1414..1417 +
1690964332.9634671-UTR-F-serratus_M_contig8439:1413..14171690964332.9634671-UTR-F-serratus_M_contig8439:1413..1417Fucus serratus maleUTRF-serratus_M_contig8439 1414..1417 +
1622932487.5291016-UTR-F-serratus_M_contig8439:1717..18791622932487.5291016-UTR-F-serratus_M_contig8439:1717..1879Fucus serratus maleUTRF-serratus_M_contig8439 1718..1879 +
1690964332.97442-UTR-F-serratus_M_contig8439:1717..18791690964332.97442-UTR-F-serratus_M_contig8439:1717..1879Fucus serratus maleUTRF-serratus_M_contig8439 1718..1879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932487.4822264-CDS-F-serratus_M_contig8439:1044..14131622932487.4822264-CDS-F-serratus_M_contig8439:1044..1413Fucus serratus maleCDSF-serratus_M_contig8439 1045..1413 +
1690964332.9525313-CDS-F-serratus_M_contig8439:1044..14131690964332.9525313-CDS-F-serratus_M_contig8439:1044..1413Fucus serratus maleCDSF-serratus_M_contig8439 1045..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8439.19817.1

>prot_F-serratus_M_contig8439.19817.1 ID=prot_F-serratus_M_contig8439.19817.1|Name=mRNA_F-serratus_M_contig8439.19817.1|organism=Fucus serratus male|type=polypeptide|length=123bp
MVDICSRKCNTESCRKQPSFGVAGTKTAKYCAQHAPDEMVNVKHNGAKQE
TVHTPPTMTSPLSKSSQGSRKRLRHPETAPTASKQAVLRESSGAAGTTPD
IDGKKSPVTRNSSVKVEVQVYL*
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mRNA from alignment at F-serratus_M_contig8439:1002..1879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8439.19817.1 ID=mRNA_F-serratus_M_contig8439.19817.1|Name=mRNA_F-serratus_M_contig8439.19817.1|organism=Fucus serratus male|type=mRNA|length=878bp|location=Sequence derived from alignment at F-serratus_M_contig8439:1002..1879+ (Fucus serratus male)
TACTAAAACAGCGGAGTACTGCTCTCAGCACACTCTGGACGGGATGGTCG
ATATTTGCAGCAGAAAGTGCAACACCGAAAGCTGCAGAAAACAGCCGTCG
TTTGGAGTGGCAGGTACAAAAACTGCGAAGTACTGTGCGCAGCACGCCCC
GGATGAGATGGTCAACGTCAAACATAATGGCGCGAAACAAGAAACCGTTC
ATACTCCTCCCACCATGACAAGCCCTCTGTCGAAAAGTAGCCAGGGATCT
CGTAAGCGACTACGACACCCAGAAACGGCACCTACGGCTTCGAAGCAAGC
TGTCTTACGAGAGTCGTCTGGAGCGGCAGGAACTACGCCGGATATCGACG
GGAAAAAATCTCCCGTGACACGAAATTCTTCTGTGAAGGTGGAGGTGCAG
GTCTACTTGTAGCCAGGTATACTACAAGTGACCGCAAGCGATATCTGCTC
GATATATGTTTTATATACTCAAGTGCTACGATTCCGGCCACAGTAGCTCA
TTCGTTAGCTTTTTCTCTGTTCAGATTGAATGCGTAACCCGTTTCGTTCA
TGAATCTTGCTCTACGCTTCGTCTCATGGTTACGAGTTCAGCTCAAGGAC
CCCTTTTCCTCTTCGACCCTCAAGACCTTGCAGTTGCAGCCATTCCTTAA
CGAAACACCTTACTCGTGCTTACCCCCAAGGCCCTGTTCTACCGTTCTCT
CCTGTATCGAACTCAGGTGCTGGTGTCAAGAGCGTGGTCATGACATTTAT
ACTTCTGCCGCGGAGATACTGATGGGTCTGGTGAGGGCGCTAACGTGTGT
ACCCCGACAATGGCTTCCTGCATTTTCTTGGCACTATCTAAGCGTAGATT
TTTCACGTACTATTTTTTGCATATGCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8439:1002..1879+

>mRNA_F-serratus_M_contig8439.19817.1 ID=mRNA_F-serratus_M_contig8439.19817.1|Name=mRNA_F-serratus_M_contig8439.19817.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig8439:1002..1879+ (Fucus serratus male)
ATGGTCGATATTTGCAGCAGAAAGTGCAACACCGAAAGCTGCAGAAAACA
GCCGTCGTTTGGAGTGGCAGGTACAAAAACTGCGAAGTACTGTGCGCAGC
ACGCCCCGGATGAGATGGTCAACGTCAAACATAATGGCGCGAAACAAGAA
ACCGTTCATACTCCTCCCACCATGACAAGCCCTCTGTCGAAAAGTAGCCA
GGGATCTCGTAAGCGACTACGACACCCAGAAACGGCACCTACGGCTTCGA
AGCAAGCTGTCTTACGAGAGTCGTCTGGAGCGGCAGGAACTACGCCGGAT
ATCGACGGGAAAAAATCTCCCGTGACACGAAATTCTTCTGTGAAGGTGGA
GGTGCAGGTCTACTTGTAGATGGTCGATATTTGCAGCAGAAAGTGCAACA
CCGAAAGCTGCAGAAAACAGCCGTCGTTTGGAGTGGCAGGTACAAAAACT
GCGAAGTACTGTGCGCAGCACGCCCCGGATGAGATGGTCAACGTCAAACA
TAATGGCGCGAAACAAGAAACCGTTCATACTCCTCCCACCATGACAAGCC
CTCTGTCGAAAAGTAGCCAGGGATCTCGTAAGCGACTACGACACCCAGAA
ACGGCACCTACGGCTTCGAAGCAAGCTGTCTTACGAGAGTCGTCTGGAGC
GGCAGGAACTACGCCGGATATCGACGGGAAAAAATCTCCCGTGACACGAA
ATTCTTCTGTGAAGGTGGAGGTGCAGGTCTACTTGTAG
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