mRNA_F-serratus_M_contig8438.19816.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8438.19816.1
Unique NamemRNA_F-serratus_M_contig8438.19816.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8438.19816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8438contigF-serratus_M_contig8438:640..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8438.19816.1prot_F-serratus_M_contig8438.19816.1Fucus serratus malepolypeptideF-serratus_M_contig8438 667..1095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932487.3456914-UTR-F-serratus_M_contig8438:639..6661622932487.3456914-UTR-F-serratus_M_contig8438:639..666Fucus serratus maleUTRF-serratus_M_contig8438 640..666 +
1690964332.8990679-UTR-F-serratus_M_contig8438:639..6661690964332.8990679-UTR-F-serratus_M_contig8438:639..666Fucus serratus maleUTRF-serratus_M_contig8438 640..666 +
1622932487.405968-UTR-F-serratus_M_contig8438:1095..11241622932487.405968-UTR-F-serratus_M_contig8438:1095..1124Fucus serratus maleUTRF-serratus_M_contig8438 1096..1124 +
1690964332.9322371-UTR-F-serratus_M_contig8438:1095..11241690964332.9322371-UTR-F-serratus_M_contig8438:1095..1124Fucus serratus maleUTRF-serratus_M_contig8438 1096..1124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932487.3636215-CDS-F-serratus_M_contig8438:666..7231622932487.3636215-CDS-F-serratus_M_contig8438:666..723Fucus serratus maleCDSF-serratus_M_contig8438 667..723 +
1690964332.9114714-CDS-F-serratus_M_contig8438:666..7231690964332.9114714-CDS-F-serratus_M_contig8438:666..723Fucus serratus maleCDSF-serratus_M_contig8438 667..723 +
1622932487.3857234-CDS-F-serratus_M_contig8438:1041..10951622932487.3857234-CDS-F-serratus_M_contig8438:1041..1095Fucus serratus maleCDSF-serratus_M_contig8438 1042..1095 +
1690964332.9224327-CDS-F-serratus_M_contig8438:1041..10951690964332.9224327-CDS-F-serratus_M_contig8438:1041..1095Fucus serratus maleCDSF-serratus_M_contig8438 1042..1095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8438.19816.1

>prot_F-serratus_M_contig8438.19816.1 ID=prot_F-serratus_M_contig8438.19816.1|Name=mRNA_F-serratus_M_contig8438.19816.1|organism=Fucus serratus male|type=polypeptide|length=37bp
MAGVFEGMDPLTFKGDVSATIISKIESRPIRIVQPA*
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mRNA from alignment at F-serratus_M_contig8438:640..1124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8438.19816.1 ID=mRNA_F-serratus_M_contig8438.19816.1|Name=mRNA_F-serratus_M_contig8438.19816.1|organism=Fucus serratus male|type=mRNA|length=485bp|location=Sequence derived from alignment at F-serratus_M_contig8438:640..1124+ (Fucus serratus male)
CACAGCCCGCGATACTCTGGTTTGAAGATGGCTGGCGTGTTCGAGGGCAT
GGACCCATTGACTTTCAAGGGTGATGTCTCCGCGGTGGGAAATGCCCCTC
CGTTCAAACGAAAAGCGATCGACAAAAGAATGGATCCGGCTTATAAGGCT
ACAACGCGATGCACTTCGAGAGTTAACGCTATCTTCCCGTGCGCTGCGTC
GCATTCCAAAAATTTAACCAAATAGAATTATTTACTTACAAGTTCAAAAT
TTGACAAAATCAATTCTATTGACACCATCTATAATGGTGTGTACGTCGAA
TAAGGTACCCATGTACAGCTACTTTAAAACACTTGGGGGTTAAGTCCTCC
CGACGGAATATTGAGCGCGTGCAATTTATCTGCCCGGCTGATTTCCCTCC
AGACAATAATTTCCAAGATCGAATCGAGGCCGATACGGATTGTTCAGCCT
GCCTAACGGGCGCGAGCGGGTCGTCCTACTTCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8438:640..1124+

>mRNA_F-serratus_M_contig8438.19816.1 ID=mRNA_F-serratus_M_contig8438.19816.1|Name=mRNA_F-serratus_M_contig8438.19816.1|organism=Fucus serratus male|type=CDS|length=222bp|location=Sequence derived from alignment at F-serratus_M_contig8438:640..1124+ (Fucus serratus male)
ATGGCTGGCGTGTTCGAGGGCATGGACCCATTGACTTTCAAGGGTGATGT
CTCCGCGATGGCTGGCGTGTTCGAGGGCATGGACCCATTGACTTTCAAGG
GTGATGTCTCCGCGACAATAATTTCCAAGATCGAATCGAGGCCGATACGG
ATTGTTCAGCCTGCCTAAACAATAATTTCCAAGATCGAATCGAGGCCGAT
ACGGATTGTTCAGCCTGCCTAA
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