mRNA_F-serratus_M_contig8432.19815.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8432.19815.1
Unique NamemRNA_F-serratus_M_contig8432.19815.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8432.19815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8432contigF-serratus_M_contig8432:1724..2149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932487.2548234-CDS-F-serratus_M_contig8432:1723..21401622932487.2548234-CDS-F-serratus_M_contig8432:1723..2140Fucus serratus maleCDSF-serratus_M_contig8432 1724..2140 -
1690964332.8719769-CDS-F-serratus_M_contig8432:1723..21401690964332.8719769-CDS-F-serratus_M_contig8432:1723..2140Fucus serratus maleCDSF-serratus_M_contig8432 1724..2140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932487.277679-UTR-F-serratus_M_contig8432:2140..21491622932487.277679-UTR-F-serratus_M_contig8432:2140..2149Fucus serratus maleUTRF-serratus_M_contig8432 2141..2149 -
1690964332.8878915-UTR-F-serratus_M_contig8432:2140..21491690964332.8878915-UTR-F-serratus_M_contig8432:2140..2149Fucus serratus maleUTRF-serratus_M_contig8432 2141..2149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8432.19815.1prot_F-serratus_M_contig8432.19815.1Fucus serratus malepolypeptideF-serratus_M_contig8432 1724..2140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8432.19815.1

>prot_F-serratus_M_contig8432.19815.1 ID=prot_F-serratus_M_contig8432.19815.1|Name=mRNA_F-serratus_M_contig8432.19815.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MYVGERSSLSKFLKLSYTYVLSHKSEDALNYGRPIILTSKKSRSELEAQY
SRRDVEKSLVVWSALTKAVANDKIDIVVGAKAPWKAWKILNSVVEDDTSD
RLKEQPRKKFEELSMDDAESMKEYVARAKSLDLSAKYYG
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mRNA from alignment at F-serratus_M_contig8432:1724..2149-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8432.19815.1 ID=mRNA_F-serratus_M_contig8432.19815.1|Name=mRNA_F-serratus_M_contig8432.19815.1|organism=Fucus serratus male|type=mRNA|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig8432:1724..2149- (Fucus serratus male)
CCGATCCCCATGTACGTTGGGGAACGCAGCAGCCTGTCTAAGTTTTTAAA
GCTTTCCTACACGTACGTACTCTCGCACAAATCAGAAGATGCGCTGAATT
ATGGCCGACCTATAATATTGACCTCAAAGAAATCCCGATCAGAGCTTGAA
GCACAGTACAGTAGGCGGGATGTTGAGAAGTCACTGGTCGTCTGGAGCGC
TTTAACGAAAGCTGTAGCAAACGACAAGATAGATATCGTTGTTGGAGCCA
AAGCTCCGTGGAAGGCATGGAAGATTTTGAACAGTGTGGTTGAGGATGAT
ACTAGCGATAGATTAAAAGAGCAGCCAAGGAAAAAATTTGAAGAACTGAG
TATGGACGATGCTGAATCAATGAAAGAGTACGTTGCACGCGCAAAGTCTC
TAGACCTCAGTGCGAAGTATTACGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig8432:1724..2149-

>mRNA_F-serratus_M_contig8432.19815.1 ID=mRNA_F-serratus_M_contig8432.19815.1|Name=mRNA_F-serratus_M_contig8432.19815.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig8432:1724..2149- (Fucus serratus male)
ATGTACGTTGGGGAACGCAGCAGCCTGTCTAAGTTTTTAAAGCTTTCCTA
CACGTACGTACTCTCGCACAAATCAGAAGATGCGCTGAATTATGGCCGAC
CTATAATATTGACCTCAAAGAAATCCCGATCAGAGCTTGAAGCACAGTAC
AGTAGGCGGGATGTTGAGAAGTCACTGGTCGTCTGGAGCGCTTTAACGAA
AGCTGTAGCAAACGACAAGATAGATATCGTTGTTGGAGCCAAAGCTCCGT
GGAAGGCATGGAAGATTTTGAACAGTGTGGTTGAGGATGATACTAGCGAT
AGATTAAAAGAGCAGCCAAGGAAAAAATTTGAAGAACTGAGTATGGACGA
TGCTGAATCAATGAAAGAGTACGTTGCACGCGCAAAGTCTCTAGACCTCA
GTGCGAAGTATTACGGTATGTACGTTGGGGAACGCAGCAGCCTGTCTAAG
TTTTTAAAGCTTTCCTACACGTACGTACTCTCGCACAAATCAGAAGATGC
GCTGAATTATGGCCGACCTATAATATTGACCTCAAAGAAATCCCGATCAG
AGCTTGAAGCACAGTACAGTAGGCGGGATGTTGAGAAGTCACTGGTCGTC
TGGAGCGCTTTAACGAAAGCTGTAGCAAACGACAAGATAGATATCGTTGT
TGGAGCCAAAGCTCCGTGGAAGGCATGGAAGATTTTGAACAGTGTGGTTG
AGGATGATACTAGCGATAGATTAAAAGAGCAGCCAAGGAAAAAATTTGAA
GAACTGAGTATGGACGATGCTGAATCAATGAAAGAGTACGTTGCACGCGC
AAAGTCTCTAGACCTCAGTGCGAAGTATTACGGT
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