mRNA_F-serratus_M_contig843.19809.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig843.19809.1
Unique NamemRNA_F-serratus_M_contig843.19809.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig843.19809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig843contigF-serratus_M_contig843:47221..47773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size399
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.6341035-UTR-F-serratus_M_contig843:47220..473741622932485.6341035-UTR-F-serratus_M_contig843:47220..47374Fucus serratus maleUTRF-serratus_M_contig843 47221..47374 +
1690964332.001901-UTR-F-serratus_M_contig843:47220..473741690964332.001901-UTR-F-serratus_M_contig843:47220..47374Fucus serratus maleUTRF-serratus_M_contig843 47221..47374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.6518981-CDS-F-serratus_M_contig843:47374..477731622932485.6518981-CDS-F-serratus_M_contig843:47374..47773Fucus serratus maleCDSF-serratus_M_contig843 47375..47773 +
1690964332.0128891-CDS-F-serratus_M_contig843:47374..477731690964332.0128891-CDS-F-serratus_M_contig843:47374..47773Fucus serratus maleCDSF-serratus_M_contig843 47375..47773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig843.19809.1prot_F-serratus_M_contig843.19809.1Fucus serratus malepolypeptideF-serratus_M_contig843 47375..47773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig843.19809.1

>prot_F-serratus_M_contig843.19809.1 ID=prot_F-serratus_M_contig843.19809.1|Name=mRNA_F-serratus_M_contig843.19809.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MRTQAESGAYLRDSSRVPLRRPYICFKPPYAIGSVPSLSGHAIAYRWRSL
PRVRRHRASKPQGSSERALPQQVTMDQLIYTFLSHTHYWYEVARLKVPVT
VSCGKCQSWIGPSSSNEQHLEQTRISLNYNLN*
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mRNA from alignment at F-serratus_M_contig843:47221..47773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig843.19809.1 ID=mRNA_F-serratus_M_contig843.19809.1|Name=mRNA_F-serratus_M_contig843.19809.1|organism=Fucus serratus male|type=mRNA|length=553bp|location=Sequence derived from alignment at F-serratus_M_contig843:47221..47773+ (Fucus serratus male)
CGTGGTCAGCTGAAAAGGGAAATGAATATTCCCTGTCCACGTTCGTGCCT
GAGAATTTGGTCTCGGGAGACGGTTTCGGCAGTCCCGCCCCGCGTCAGCC
TGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTATACTATAAAGTATC
GAATATGAGGACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCC
GAGTTCCGCTGCGGCGCCCATATATTTGTTTTAAACCGCCATACGCCATC
GGGTCAGTCCCAAGTTTATCGGGTCATGCAATCGCGTATCGATGGCGTTC
ACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCG
AACGAGCGCTGCCTCAGCAGGTCACCATGGACCAATTAATATACACCTTT
CTTTCCCACACCCACTATTGGTACGAAGTGGCCAGATTGAAAGTACCGGT
GACAGTATCCTGCGGTAAATGCCAGTCATGGATAGGCCCGTCCAGCTCCA
ACGAACAACACTTGGAACAGACTCGGATATCCCTCAACTACAACTTAAAC
TAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig843:47221..47773+

>mRNA_F-serratus_M_contig843.19809.1 ID=mRNA_F-serratus_M_contig843.19809.1|Name=mRNA_F-serratus_M_contig843.19809.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig843:47221..47773+ (Fucus serratus male)
ATGAGGACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGT
TCCGCTGCGGCGCCCATATATTTGTTTTAAACCGCCATACGCCATCGGGT
CAGTCCCAAGTTTATCGGGTCATGCAATCGCGTATCGATGGCGTTCACTG
CCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACG
AGCGCTGCCTCAGCAGGTCACCATGGACCAATTAATATACACCTTTCTTT
CCCACACCCACTATTGGTACGAAGTGGCCAGATTGAAAGTACCGGTGACA
GTATCCTGCGGTAAATGCCAGTCATGGATAGGCCCGTCCAGCTCCAACGA
ACAACACTTGGAACAGACTCGGATATCCCTCAACTACAACTTAAACTAAA
TGAGGACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTT
CCGCTGCGGCGCCCATATATTTGTTTTAAACCGCCATACGCCATCGGGTC
AGTCCCAAGTTTATCGGGTCATGCAATCGCGTATCGATGGCGTTCACTGC
CGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGA
GCGCTGCCTCAGCAGGTCACCATGGACCAATTAATATACACCTTTCTTTC
CCACACCCACTATTGGTACGAAGTGGCCAGATTGAAAGTACCGGTGACAG
TATCCTGCGGTAAATGCCAGTCATGGATAGGCCCGTCCAGCTCCAACGAA
CAACACTTGGAACAGACTCGGATATCCCTCAACTACAACTTAAACTAA
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