mRNA_F-serratus_M_contig8427.19807.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8427.19807.1
Unique NamemRNA_F-serratus_M_contig8427.19807.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8427.19807.1 vs. uniprot
Match: A0A6H5KQB6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQB6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 6.210e-50
Identity = 83/133 (62.41%), Postives = 102/133 (76.69%), Query Frame = 1 
Query:   46 GWRNLTHISLGE-PHASRLDKGAFDYYAVSIPPAPSDDPWATVMINVTPTKGGLQDVYVTTDRTREPGPTDYAVKGENWAGSMAVMFSETVPGFCTDCTIYVSVFGYKAGSYSIVASQGLTKLREGFPQQGTV 441
            GWR+   + LG  P +S L +G FDYYA+ I PAP ++PW ++++  TPT GG QD+Y TT+R+REPGP DY VK  NW GS  ++FSET PGFCTDCTIYV V+GYK G YSIVASQGLT+L+EGFPQQG V
Sbjct:   15 GWRHPQQLLLGNHPQSSFLVEGNFDYYALLITPAPEENPWESIVVTTTPTGGGQQDLYATTNRSREPGPEDYDVKSSNWVGSSTLVFSETAPGFCTDCTIYVGVYGYKKGGYSIVASQGLTRLQEGFPQQGLV 147
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BLAST of mRNA_F-serratus_M_contig8427.19807.1 vs. uniprot
Match: A0A4D9CYF0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYF0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.040e-18
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 1 
Query:   31 ASLRSGWRNLTHISLGEPHASRLDKGAFDYYAVSIPPAPSDDPWATVMINVTPTKGGLQDVYVTTDRTREPGPTDYAVKGENWAGSMAVMFSETVPGFCTDCTIYVSVFGYKAGSYSIVASQGLTK--LREGFPQQGTV 441
            ASL +GW N + +  G P +  + K A+ YY   IP          V I + P     QD+YVT    +EPG  ++  +  +W+ +  V+ +   P +CT C++YV+V+GY AG YS+VA+   T+  L+ G P +GTV
Sbjct:  626 ASLNTGWLNPSVLIPGLPQSGEVAKSAYHYYQFRIPAGVDGAVEPLVRITLLPEDDTDQDLYVTFSAEKEPGKENFDARSTSWSDNDEVLLAPGGPHYCTGCSVYVAVYGYDAGPYSLVATLSTTQQQLQLGVPVRGTV 764
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BLAST of mRNA_F-serratus_M_contig8427.19807.1 vs. uniprot
Match: A0A836CJK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.780e-17
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:  169 VMINVTPTKGGLQDVYVTTDRTREPGPTDYAVKGENWAGSMAVMFSETVPGFCTDCTIYVSVFGYKAGSYSIVASQ--GLTKLREGFPQQGTV 441
            V I VTPT GG  DV+VT  R REPG   Y V+ + W GS   +F+E  P +CT CT+Y++V G++ G++SI      GLT L+ G P  G +
Sbjct: 1040 VAITVTPTDGGDTDVFVTASRDREPGQHSYDVRSQAWTGSDVAVFAEGAPNYCTGCTLYIAVKGFRGGAFSITGEVDGGLTLLQAGLPVAGAI 1132
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BLAST of mRNA_F-serratus_M_contig8427.19807.1 vs. uniprot
Match: A0A7S1C2U3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2U3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.010e-9
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:   76 GEPHASRLDKGAFDYYAVSIPPAPSDDPWATVMINVTPTKGGLQDVYVTTDRTREPGPTDYAVKGENWAGSMAVMFSETVPGFCTDCTIYVSVFGYKAGSYSIVASQG--LTKLREGFPQQGTV 441
            G P    +    + YY   +    S      V ++VTP+ G   D+YVTTD T  PG   YA    ++ G   V         C++C ++++V+GY    +S+  SQG  +T+L++G PQQG V
Sbjct:  791 GSPQQGSVGLHEYAYYIAHLGTMSSP-----VTVSVTPSTGDA-DLYVTTDGT-VPGKNHYAYSSTHFGGEDRVTIQPGDAAACSNCNVFIAVYGYTEAEFSVTYSQGTSVTRLQDGVPQQGRV 907
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BLAST of mRNA_F-serratus_M_contig8427.19807.1 vs. uniprot
Match: A0A482RVW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVW8_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 3.130e-8
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:   76 GEPHASRLDKGAFDYYAVSIPPAPSDDPWATVM-----INVTPTKGGLQDVYVTTDRTR-----EPGPTDYAVKGENWAG-SMAVMFSETVPGFCTDCTIYVSVFGYKAGSYSIVASQ-GLTKLR 414
            G P   R+  GA+ YY   +  +   +   T M      ++TP +GG  D+Y+           EPG  +Y  K   W+  S ++  S  +PG+C +C +Y++VFGY  GSY+I AS  GL  L+
Sbjct:  696 GLPENGRVKTGAYRYYKYLV--SVESNGLVTNMPLDIKFSLTPAEGGDVDLYIKFGNQSALPIFEPGKDNYDYKSTGWSSVSESIEVSYGMPGYCVNCVVYLAVFGYTEGSYTIQASSTGLLTLQ 818
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8427.19807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KQB6_9PHAE6.210e-5062.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CYF0_9STRA2.040e-1835.25Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A836CJK6_9STRA1.780e-1745.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1C2U3_9STRA2.010e-932.26Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A482RVW8_9ARCH3.130e-832.80Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8427contigF-serratus_M_contig8427:5981..6872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size441
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8427.19807.1prot_F-serratus_M_contig8427.19807.1Fucus serratus malepolypeptideF-serratus_M_contig8427 5981..6872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.5326376-CDS-F-serratus_M_contig8427:5980..61011622932485.5326376-CDS-F-serratus_M_contig8427:5980..6101Fucus serratus maleCDSF-serratus_M_contig8427 5981..6101 -
1690964331.9706373-CDS-F-serratus_M_contig8427:5980..61011690964331.9706373-CDS-F-serratus_M_contig8427:5980..6101Fucus serratus maleCDSF-serratus_M_contig8427 5981..6101 -
1622932485.555412-CDS-F-serratus_M_contig8427:6299..64121622932485.555412-CDS-F-serratus_M_contig8427:6299..6412Fucus serratus maleCDSF-serratus_M_contig8427 6300..6412 -
1690964331.9809904-CDS-F-serratus_M_contig8427:6299..64121690964331.9809904-CDS-F-serratus_M_contig8427:6299..6412Fucus serratus maleCDSF-serratus_M_contig8427 6300..6412 -
1622932485.5814593-CDS-F-serratus_M_contig8427:6665..68721622932485.5814593-CDS-F-serratus_M_contig8427:6665..6872Fucus serratus maleCDSF-serratus_M_contig8427 6666..6872 -
1690964331.9913123-CDS-F-serratus_M_contig8427:6665..68721690964331.9913123-CDS-F-serratus_M_contig8427:6665..6872Fucus serratus maleCDSF-serratus_M_contig8427 6666..6872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8427.19807.1

>prot_F-serratus_M_contig8427.19807.1 ID=prot_F-serratus_M_contig8427.19807.1|Name=mRNA_F-serratus_M_contig8427.19807.1|organism=Fucus serratus male|type=polypeptide|length=147bp
MLPKNAGRRQASLRSGWRNLTHISLGEPHASRLDKGAFDYYAVSIPPAPS
DDPWATVMINVTPTKGGLQDVYVTTDRTREPGPTDYAVKGENWAGSMAVM
FSETVPGFCTDCTIYVSVFGYKAGSYSIVASQGLTKLREGFPQQGTV
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mRNA from alignment at F-serratus_M_contig8427:5981..6872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8427.19807.1 ID=mRNA_F-serratus_M_contig8427.19807.1|Name=mRNA_F-serratus_M_contig8427.19807.1|organism=Fucus serratus male|type=mRNA|length=892bp|location=Sequence derived from alignment at F-serratus_M_contig8427:5981..6872- (Fucus serratus male)
ATGTTGCCAAAAAACGCCGGCCGGCGGCAGGCGTCGTTAAGGTCCGGGTG
GAGGAATCTGACCCACATCTCCCTCGGGGAGCCGCACGCGTCTCGGCTGG
ACAAGGGCGCGTTCGACTACTACGCTGTCTCCATCCCACCCGCGCCCTCG
GACGACCCCTGGGCGACCGTCATGATTAACGTGACGCCTACCAAGGGTGG
CCTTCAGGTGAGGTGAAAGAGTTTAACTGGGCATCAGGTGCGCGAAGTCG
TAATATCGCTGCTACAGCAAGAAGTGCCAAACACAAACTTGTAAGGCCGT
CACGCGCACCCGAGCATGGCAGGGAGGCCGTCTATAGTCTCTCGGTTTCC
CCTCGCCCCATGCATCCTTTTTTAATATGTTTCTCGCCGCGGTGGTGGAA
TCAAACCACTCGATGGCGATGGCGATGGCGATGGCATGCGATTTTACTCT
TTGGAAACAGGACGTCTACGTCACCACCGACCGGACGCGCGAGCCCGGTC
CAACGGACTATGCCGTCAAGGGCGAGAACTGGGCGGGGTCGATGGCGGTG
ATGTTCTCGGAGACGGTTCCCGGGTGAGCAAATATATTTTCTCGTTGGGA
AATGGAGTCGGTAATAGATATGGCGTTTTGTACCACGTGTAGAGTCTAGC
AAAGATGCCGTCTTGTTGTTGGGGGCTCTCGCTCCATCGCTCCAGGGGTG
ATTCAGAAATGCTGCTGCTGGCATGGACTCGATCGGGAGCCTTGTGTGTG
TGTTTTTCCTACTCGGTACAGGTTCTGCACGGACTGCACCATATACGTGA
GCGTATTCGGGTACAAGGCGGGATCCTACTCCATCGTGGCCAGCCAGGGT
CTCACGAAGCTTCGCGAAGGCTTTCCTCAGCAGGGGACAGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8427:5981..6872-

>mRNA_F-serratus_M_contig8427.19807.1 ID=mRNA_F-serratus_M_contig8427.19807.1|Name=mRNA_F-serratus_M_contig8427.19807.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig8427:5981..6872- (Fucus serratus male)
ATGTTGCCAAAAAACGCCGGCCGGCGGCAGGCGTCGTTAAGGTCCGGGTG
GAGGAATCTGACCCACATCTCCCTCGGGGAGCCGCACGCGTCTCGGCTGG
ACAAGGGCGCGTTCGACTACTACGCTGTCTCCATCCCACCCGCGCCCTCG
GACGACCCCTGGGCGACCGTCATGATTAACGTGACGCCTACCAAGGGTGG
CCTTCAGATGTTGCCAAAAAACGCCGGCCGGCGGCAGGCGTCGTTAAGGT
CCGGGTGGAGGAATCTGACCCACATCTCCCTCGGGGAGCCGCACGCGTCT
CGGCTGGACAAGGGCGCGTTCGACTACTACGCTGTCTCCATCCCACCCGC
GCCCTCGGACGACCCCTGGGCGACCGTCATGATTAACGTGACGCCTACCA
AGGGTGGCCTTCAGGACGTCTACGTCACCACCGACCGGACGCGCGAGCCC
GGTCCAACGGACTATGCCGTCAAGGGCGAGAACTGGGCGGGGTCGATGGC
GGTGATGTTCTCGGAGACGGTTCCCGGGACGTCTACGTCACCACCGACCG
GACGCGCGAGCCCGGTCCAACGGACTATGCCGTCAAGGGCGAGAACTGGG
CGGGGTCGATGGCGGTGATGTTCTCGGAGACGGTTCCCGGGTTCTGCACG
GACTGCACCATATACGTGAGCGTATTCGGGTACAAGGCGGGATCCTACTC
CATCGTGGCCAGCCAGGGTCTCACGAAGCTTCGCGAAGGCTTTCCTCAGC
AGGGGACAGTGGTTCTGCACGGACTGCACCATATACGTGAGCGTATTCGG
GTACAAGGCGGGATCCTACTCCATCGTGGCCAGCCAGGGTCTCACGAAGC
TTCGCGAAGGCTTTCCTCAGCAGGGGACAGTG
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