mRNA_F-serratus_M_contig842.19805.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig842.19805.1
Unique NamemRNA_F-serratus_M_contig842.19805.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig842.19805.1 vs. uniprot
Match: A0A6H5JW11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW11_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.280e-53
Identity = 181/484 (37.40%), Postives = 213/484 (44.01%), Query Frame = 1 
Query:    1 GQGHLLPRSR*KYPTPGYPGVDEREVARRVTGR*AALLNIFHLRWLGFGAFLLVRLIEALLRNASRADAGPTRDLESTASPSVSGGSNSVTSQG--------GLERQASFIILWARHLLSRRWHLRSSDGENREVLQRLATESGLSSAFSQDTEASWGPREEAWVDEP--APPEVLRAAFFPLRELRDRCRGVFSMLPARSAPV----------DLEDDGETAGVDATPMPAAVAAESVAACNGRE-GPRFHWAKENLKTMCDALDAALSGESGPSL------------RHGGGSGANAGAP----------FLHRQEK---IEPTPE-DDFGG--GQVAHGTSSSAEIARDGHVSKGSESVHLDGGLCTCSEMMDLDTLEKMMASEVLAESQPLISLKACSKLAPEILGIPTADCSVRGELVGGEGPAKGEYVSVGRDIGVGKGICEQGDMGDSRECDTAWELVEDWTPCAISTLPGWPTAPL 1305
            GQGHLLPRSR KYPTP         V     G  A LL++FH RW GFGA LLVRL+EALL NAS          E+    S  GG N              GLERQA+FI +W  HLLSRRWHLR+SD   RE L+  A  +GLS  F Q  EA W   E  W D+P  +P  VL AA+FP+ EL DRCR   S LPA   P            L    E +   A P P+   A+ +A   G+  G   HWA+  L  +C AL AAL GE+  S             R G    A AGAP              QE    + PT E +   G  G+V +  SS      D      SE+  L         MM LD LE+++  +                 A   L  P    SV   +  G     G +  VGR   V       GD G       AWELVE WTPCAI TLPG   A L
Sbjct:  308 GQGHLLPRSRDKYPTP---------VRGLGGGWWATLLDMFHSRWRGFGAALLVRLVEALLDNASSTPGAAVNADEN--GRSACGGGNXXXXXXXXXXXXXXGLERQAAFIEIWVNHLLSRRWHLRTSDARVREALREEAVRAGLSPTFFQAKEALWEENESTWADKPGESPVSVLHAAYFPVHELLDRCRRALSALPAARQPSAANPRTPGDGSLVGKSERSTCPAPPSPST--ADGIADDEGKNIGYSAHWARAGLDAVCHALAAALPGENAASPSASAATFGLDAHRKGECDNAAAGAPSGPVVATQVAISANQEVPLCVPPTEECNQTAGPPGEVLNHCSSGGAERGDAAKGPASETAPL-------LAMMGLDDLERLLGGD-----------------ASSSLAAPGGYTSVPSSIAAGAVRESG-FREVGRPSEV------NGDTG------RAWELVEAWTPCAIGTLPGSSAARL 741
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BLAST of mRNA_F-serratus_M_contig842.19805.1 vs. uniprot
Match: D8LD46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD46_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.440e-24
Identity = 73/166 (43.98%), Postives = 84/166 (50.60%), Query Frame = 1 
Query:    4 QGHLLPRSR*KYPTPGYPGVDEREVARRVTGR*AALLNIFHLRWLGFGAFLLVRLIEALLRNAS-------RADAGPTRDLESTASPSVSGGSNSVTSQGGLERQASFIILWARHLLSRRWHLRSSDGENREVLQRLATESGLSSAFSQDTEASWGPREEAWVDEP 480
            QGHLLPRSR KYPTPG PGVD R+V+RR++ R A LL++FH RW GFGA LLVRL+EALL N S        AD   T                       LERQA+FI +WAR                R  L+  A    L   F Q  EA W   E  WVD+P
Sbjct:  121 QGHLLPRSRDKYPTPGTPGVDSRQVSRRLSARWATLLDMFHSRWRGFGAALLVRLVEALLDNDSSTPGEAVNADDDGTSACXXXXXXXXXXXXXXXXXXXXLERQAAFIEIWARV---------------RGALREEAVHDRLPPTFFQAKEALWEENESTWVDKP 271
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BLAST of mRNA_F-serratus_M_contig842.19805.1 vs. uniprot
Match: D7FGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU4_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-6
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 GQGHLLPRSR*KYPTPGYPGVDEREVARRVTGR*AAL 111
            GQGHLLPRSR KYPTPG PGVD R+V+RR+T R + L
Sbjct:  293 GQGHLLPRSRDKYPTPGTPGVDSRQVSRRLTARCSTL 329
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig842.19805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JW11_9PHAE9.280e-5337.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD46_ECTSI2.440e-2443.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGU4_ECTSI1.230e-672.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig842contigF-serratus_M_contig842:27565..30750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1886
Cds size774
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.203894-UTR-F-serratus_M_contig842:27564..281211622932485.203894-UTR-F-serratus_M_contig842:27564..28121Fucus serratus maleUTRF-serratus_M_contig842 27565..28121 -
1690964331.8027835-UTR-F-serratus_M_contig842:27564..281211690964331.8027835-UTR-F-serratus_M_contig842:27564..28121Fucus serratus maleUTRF-serratus_M_contig842 27565..28121 -
1622932485.2472239-UTR-F-serratus_M_contig842:28895..289691622932485.2472239-UTR-F-serratus_M_contig842:28895..28969Fucus serratus maleUTRF-serratus_M_contig842 28896..28969 -
1690964331.821151-UTR-F-serratus_M_contig842:28895..289691690964331.821151-UTR-F-serratus_M_contig842:28895..28969Fucus serratus maleUTRF-serratus_M_contig842 28896..28969 -
1622932485.2691398-UTR-F-serratus_M_contig842:29194..293121622932485.2691398-UTR-F-serratus_M_contig842:29194..29312Fucus serratus maleUTRF-serratus_M_contig842 29195..29312 -
1690964331.8306212-UTR-F-serratus_M_contig842:29194..293121690964331.8306212-UTR-F-serratus_M_contig842:29194..29312Fucus serratus maleUTRF-serratus_M_contig842 29195..29312 -
1622932485.286339-UTR-F-serratus_M_contig842:29671..299361622932485.286339-UTR-F-serratus_M_contig842:29671..29936Fucus serratus maleUTRF-serratus_M_contig842 29672..29936 -
1690964331.840915-UTR-F-serratus_M_contig842:29671..299361690964331.840915-UTR-F-serratus_M_contig842:29671..29936Fucus serratus maleUTRF-serratus_M_contig842 29672..29936 -
1622932485.2988317-UTR-F-serratus_M_contig842:30342..303921622932485.2988317-UTR-F-serratus_M_contig842:30342..30392Fucus serratus maleUTRF-serratus_M_contig842 30343..30392 -
1690964331.851373-UTR-F-serratus_M_contig842:30342..303921690964331.851373-UTR-F-serratus_M_contig842:30342..30392Fucus serratus maleUTRF-serratus_M_contig842 30343..30392 -
1622932485.3138926-UTR-F-serratus_M_contig842:30702..307501622932485.3138926-UTR-F-serratus_M_contig842:30702..30750Fucus serratus maleUTRF-serratus_M_contig842 30703..30750 -
1690964331.861472-UTR-F-serratus_M_contig842:30702..307501690964331.861472-UTR-F-serratus_M_contig842:30702..30750Fucus serratus maleUTRF-serratus_M_contig842 30703..30750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.2252452-CDS-F-serratus_M_contig842:28121..288951622932485.2252452-CDS-F-serratus_M_contig842:28121..28895Fucus serratus maleCDSF-serratus_M_contig842 28122..28895 -
1690964331.8120484-CDS-F-serratus_M_contig842:28121..288951690964331.8120484-CDS-F-serratus_M_contig842:28121..28895Fucus serratus maleCDSF-serratus_M_contig842 28122..28895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig842.19805.1prot_F-serratus_M_contig842.19805.1Fucus serratus malepolypeptideF-serratus_M_contig842 28122..28895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig842.19805.1

>prot_F-serratus_M_contig842.19805.1 ID=prot_F-serratus_M_contig842.19805.1|Name=mRNA_F-serratus_M_contig842.19805.1|organism=Fucus serratus male|type=polypeptide|length=258bp
MLPARSAPVDLEDDGETAGVDATPMPAAVAAESVAACNGREGPRFHWAKE
NLKTMCDALDAALSGESGPSLRHGGGSGANAGAPFLHRQEKIEPTPEDDF
GGGQVAHGTSSSAEIARDGHVSKGSESVHLDGGLCTCSEMMDLDTLEKMM
ASEVLAESQPLISLKACSKLAPEILGIPTADCSVRGELVGGEGPAKGEYV
SVGRDIGVGKGICEQGDMGDSRECDTAWELVEDWTPCAISTLPGWPTAPL
SASDLPI*
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mRNA from alignment at F-serratus_M_contig842:27565..30750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig842.19805.1 ID=mRNA_F-serratus_M_contig842.19805.1|Name=mRNA_F-serratus_M_contig842.19805.1|organism=Fucus serratus male|type=mRNA|length=3186bp|location=Sequence derived from alignment at F-serratus_M_contig842:27565..30750- (Fucus serratus male)
GGACAAGGTCACCTGCTTCCCCGGTCCAGGTAGAAGTACCCGACGCCGGT
GGGTTTTGACAGATAACTATTACTTGTAATAGGCGGGTGATTGCGGTTGG
TTCTCATCGCAGCGCGTAGACCAGTCGGTTGCATGAATAGCGGCCACGCC
TAATGTACTTTGGCACACGCGCTCCTAGGAAAGTAATAAAAACAAGGGTA
GGCGGCAGAGGGTTAGTTCCTTTTGCTGGGTGTGGTCATACCCAGGGCAC
AGGATGACGGTCTTCGCCATACCTCAGCATTGATGCGCCGCTCCATCCCT
ATTCTCCCCCTCGCTCCTGCTCGGCTCTGTCTACGAACGTGGATGTGGTT
TCTGGTAGGGTTACCCGGGAGTCGACGAGCGCGAGGTCGCTCGCCGGGTG
ACGGGAAGGTGCGATTCATTTGAGGCGTTTGCCACACTGCATCGCGATCC
TACGCGCGGTAGGGCTCTGGTGGTGTCTTGAATTAGGCGCTGTGTGAAAG
GGTTGGCTCTTTCCCCGTGGCTTTAGAAAATTAATTACGAAGCCTTTTTT
TTGCTCTCCCTTTAGCCGTTGCCGGCATGGCGATGGTTGAGGGTTATCAT
GCATTTCCGAGTATTTCCTAAGGAGAGGATATTTAAGCTTTCGAGGGTTT
AAACAATTTGCTTTCCGCGACATTCCTCACAACTTGCAAACGAGGGCCTT
GTTGAGGTTAGATGCTGCCAACGTTTTTTGCAACTCGAACCTTCTATACC
CCAATGCCGAAGCTGGCCCTGACTCTCTCTACATTTTGTTTGTTTGATTG
TTGGGAACCTGCAGGTGAGCGGCTCTCTTGAACATATTTCACTTGAGGTG
GCTGGGATTTGGAGCCTTTCTCCTTGTCCGGCTCATCGAAGCACTTCTCC
GCAACGCATCGCGTGCTGACGCGGGACCAACCCGAGACCTGGAATCGACA
GCGTCTCCAAGCGTGAGCGGCGGCAGCAACAGCGTCACTAGTCAGGGCGG
ATTGGAACGGCAAGCATCCTTTATCATTCTCTGGGCGCGGCATCTCTTGA
GTCGCCGGTGGCATCTGCGTAGCAGCGATGTAAGAAAAGAAGGAGACCTC
CGAAGCATCTATAGTCTGCGTTTGACTGGACTCCATTGAACCAGTGTTTT
CCTAGTCGGTAGCGTCTTCCTCCACTATGTGGGGTGACTCTCGTGCATGG
TCGATCCCGTCGGTAGGACATTCGAGAGGAGATTTACCTCAACGGAGCTT
TTCGAAATCTTCAGGACACTATTAGTTTGGAGCTCTGGGCGTGAAATTTT
ACCAGTTTTTTCCTTCGTGTACGTGTAAAGACCAAACTCCTTGACCCATG
GCAAGGTTTGCACGAGCACGTGCCCCCCCCCCACCCCCCCTCTTTTTCGT
TCGCGTCGTTGGCGTGCGTCCGACTCTGAATTATGAAGGGGGAAAATCGT
GAGGTTCTGCAGCGCTTGGCAACGGAATCCGGCCTATCGTCGGCGTTTTC
CCAAGATACAGAGGCATCTTGGGGGCCGAGAGAGGAAGCGTGGGTAGACG
AGCCAGGTTCGCAAGTAAATATTCAACCGCCCCCACATTAGCGTACATCA
GCCAGTCCCCCGCTGTGGTGCGGGGCTAAGATTGATCTGGAGAATCTTAC
CGGTACGCCACAGCACTCTCTCCTACAAATAAAGATGATACCTGATAGAC
TGGAGAGTTTTGTGGGCCGAGATCGGATGTTTGGATGTTCCCTTGGCTGC
TATCTCTCTCTCTCGTACGTTCTTTTCGCAGCCCCTCCTGAAGTCCTTCG
CGCTGCATTTTTCCCGCTGAGAGAGCTGCGGGATCGGTGCCGTGGGGTAT
TTTCAATGCTGCCGGCGCGCTCCGCACCCGTGGACCTGGAAGATGACGGC
GAGACTGCAGGGGTCGATGCCACCCCCATGCCCGCCGCCGTCGCCGCCGA
ATCTGTGGCCGCCTGTAACGGTCGTGAGGGCCCGAGGTTCCACTGGGCGA
AAGAGAACCTTAAAACAATGTGCGACGCCTTAGACGCCGCGCTCTCTGGC
GAGAGTGGGCCATCTCTTCGCCATGGCGGGGGTAGTGGCGCAAACGCCGG
CGCGCCCTTTCTCCATAGACAGGAAAAAATCGAGCCGACCCCGGAGGACG
ACTTCGGCGGAGGCCAGGTCGCTCACGGGACTTCGTCGAGCGCGGAAATC
GCTCGTGACGGCCATGTGTCCAAAGGGTCAGAAAGTGTACATCTTGATGG
TGGTTTATGTACATGTAGCGAAATGATGGATCTTGACACCCTGGAAAAAA
TGATGGCGTCGGAGGTGCTTGCTGAGTCACAGCCTTTGATCTCACTCAAA
GCGTGCTCTAAGCTGGCTCCGGAGATATTGGGGATACCAACTGCGGACTG
TTCCGTGCGTGGTGAGTTGGTAGGCGGGGAAGGACCCGCGAAGGGGGAAT
ATGTGAGTGTAGGCCGAGACATTGGGGTTGGCAAGGGCATATGTGAACAA
GGCGACATGGGTGATAGCAGAGAGTGCGACACCGCGTGGGAGTTAGTAGA
GGATTGGACTCCGTGTGCGATAAGCACCTTGCCAGGATGGCCCACCGCGC
CCCTGAGTGCCAGCGACCTGCCTATTTAGAGCTCAAGTGATCCATATCGT
CCCGAAAGTCGTTAAACGAATGGGGGGAGGGGATGTCACAATTTTGCCCC
CGTTTTGGGAGGGAACGACACGAAAAATACCCTCCCGGGGACATATTTGA
CCAACCCCCTTGCACAATGAGTTGAATTCGAGGCAAGCTTGCCGTGCATG
TAGGGGACCATGTAGTACTATCCCCGGAAGCCTGTTCTGGTGACGGAATC
GTCGAATCTCCCCCCGATCGTTGACGAAAGACATGCCGTGTTATGAGAGA
AATAAAGGATGAGTAGATGGATGGGTGGATGGAAGGCTGATGAGTCTGGT
GATAGGCAGCACCGTAGAGTCTCATTGGCGCAATGTATTTAGCTCACGTA
CCTGCAGCGAAAGAAATACCAGACTAGGCGAATGTAAGGCTTCGTTTTAT
CTTCATTACGGGGGCCGGAAGTCCCTCTATCCCCTCAAAGAATAGTGCCC
GTCCAACACAGACACGAAGTTCACGAGAAAGACAACGGCGCGGCACTCTG
AGCGATCCGAATTTCCCATGGGAAAGAGTGGAGACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig842:27565..30750-

>mRNA_F-serratus_M_contig842.19805.1 ID=mRNA_F-serratus_M_contig842.19805.1|Name=mRNA_F-serratus_M_contig842.19805.1|organism=Fucus serratus male|type=CDS|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig842:27565..30750- (Fucus serratus male)
ATGCTGCCGGCGCGCTCCGCACCCGTGGACCTGGAAGATGACGGCGAGAC
TGCAGGGGTCGATGCCACCCCCATGCCCGCCGCCGTCGCCGCCGAATCTG
TGGCCGCCTGTAACGGTCGTGAGGGCCCGAGGTTCCACTGGGCGAAAGAG
AACCTTAAAACAATGTGCGACGCCTTAGACGCCGCGCTCTCTGGCGAGAG
TGGGCCATCTCTTCGCCATGGCGGGGGTAGTGGCGCAAACGCCGGCGCGC
CCTTTCTCCATAGACAGGAAAAAATCGAGCCGACCCCGGAGGACGACTTC
GGCGGAGGCCAGGTCGCTCACGGGACTTCGTCGAGCGCGGAAATCGCTCG
TGACGGCCATGTGTCCAAAGGGTCAGAAAGTGTACATCTTGATGGTGGTT
TATGTACATGTAGCGAAATGATGGATCTTGACACCCTGGAAAAAATGATG
GCGTCGGAGGTGCTTGCTGAGTCACAGCCTTTGATCTCACTCAAAGCGTG
CTCTAAGCTGGCTCCGGAGATATTGGGGATACCAACTGCGGACTGTTCCG
TGCGTGGTGAGTTGGTAGGCGGGGAAGGACCCGCGAAGGGGGAATATGTG
AGTGTAGGCCGAGACATTGGGGTTGGCAAGGGCATATGTGAACAAGGCGA
CATGGGTGATAGCAGAGAGTGCGACACCGCGTGGGAGTTAGTAGAGGATT
GGACTCCGTGTGCGATAAGCACCTTGCCAGGATGGCCCACCGCGCCCCTG
AGTGCCAGCGACCTGCCTATTTAGATGCTGCCGGCGCGCTCCGCACCCGT
GGACCTGGAAGATGACGGCGAGACTGCAGGGGTCGATGCCACCCCCATGC
CCGCCGCCGTCGCCGCCGAATCTGTGGCCGCCTGTAACGGTCGTGAGGGC
CCGAGGTTCCACTGGGCGAAAGAGAACCTTAAAACAATGTGCGACGCCTT
AGACGCCGCGCTCTCTGGCGAGAGTGGGCCATCTCTTCGCCATGGCGGGG
GTAGTGGCGCAAACGCCGGCGCGCCCTTTCTCCATAGACAGGAAAAAATC
GAGCCGACCCCGGAGGACGACTTCGGCGGAGGCCAGGTCGCTCACGGGAC
TTCGTCGAGCGCGGAAATCGCTCGTGACGGCCATGTGTCCAAAGGGTCAG
AAAGTGTACATCTTGATGGTGGTTTATGTACATGTAGCGAAATGATGGAT
CTTGACACCCTGGAAAAAATGATGGCGTCGGAGGTGCTTGCTGAGTCACA
GCCTTTGATCTCACTCAAAGCGTGCTCTAAGCTGGCTCCGGAGATATTGG
GGATACCAACTGCGGACTGTTCCGTGCGTGGTGAGTTGGTAGGCGGGGAA
GGACCCGCGAAGGGGGAATATGTGAGTGTAGGCCGAGACATTGGGGTTGG
CAAGGGCATATGTGAACAAGGCGACATGGGTGATAGCAGAGAGTGCGACA
CCGCGTGGGAGTTAGTAGAGGATTGGACTCCGTGTGCGATAAGCACCTTG
CCAGGATGGCCCACCGCGCCCCTGAGTGCCAGCGACCTGCCTATTTAG
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