mRNA_F-serratus_M_contig841.19804.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig841.19804.1
Unique NamemRNA_F-serratus_M_contig841.19804.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.220e-45
Identity = 89/217 (41.01%), Postives = 123/217 (56.68%), Query Frame = 2 
Query:   14 MCRYAHMVVRREVLYKNDHSVEEGSIDPLGHCRGFMTGFAEFLSDQGCLQRAEAHQALRCNDDRAIFELEDGTNVHFFFATVDVNKSI-DAALEQFGTSPADYDFAVFNVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWSSDDQEAFLSSKATYIAVHSMMATMRDFTRGAAEGGSDPHFCLPGPPDQLGLLLLRVLWALFFESRA 661
            MC Y + VV +   Y+   +  +  I     CR   TG  +   + GCL +     A RC+DD A F  ++G  VH++FA+ D NKSI DA L     S + YD  V N GN P M  +   ++A  +      F+WL+TY G+G V  W+   QE F  S A ++ V  MM  + +FT+GA EGG+DPHFCLPGPPD+LGLLLL+++WA+  E  A
Sbjct:    1 MCIYWNKVVAKRATYQQPGNGVDRWIHGNAQCRA-CTGLQQQQVNYGCLDQDVRDDACRCDDDHAEFLFQNGAVVHYYFASTDPNKSIKDALLPHGNVSLSYYDAVVANNGNGPEMAVDVVCEAALELQALSVPFLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEGGNDPHFCLPGPPDELGLLLLKIIWAIHQERGA 216
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BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.320e-42
Identity = 85/217 (39.17%), Postives = 119/217 (54.84%), Query Frame = 2 
Query:   14 MCRYAHMVVRREVLYKNDHSVEEGSIDPLGHCRGFMTGFAEFLSDQGCLQRAEAHQALRCNDDRAIFELEDGTNVHFFFATVDVNKSI-DAALEQFGTSPADYDFAVFNVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWSSDDQEAFLSSKATYIAVHSMMATMRDFTRGAAEGGSDPHFCLPGPPDQLGLLLLRVLWALFFESRA 661
            MC + + VV + V Y+   +  +  I     CR   TGF +   D GCL +     A RC+DD A +  ++G  VH++FA  D  KSI DA L     S + YD    N GN P M  +   ++A  +      F+WL+TYDG G V  W+   +E F  S A ++ V  M+  + +FT+GA E   DPHFCLPGPPD+LG LLL+++WAL+ E  A
Sbjct:    1 MCIHWNKVVAKRVTYQQPGNGVDRWIHGNAQCRA-CTGFDQQQVDYGCLDQDVRDDACRCDDDHAEYLFQNGAVVHYYFAGTDPKKSIKDALLPHGNVSLSHYDAVFANDGNWPKMAVDDVCEAAFELQALSVPFLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVEDRVDPHFCLPGPPDELGFLLLKIIWALYQERGA 216
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BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.060e-38
Identity = 78/227 (34.36%), Postives = 125/227 (55.07%), Query Frame = 2 
Query:    2 VEGIMCRYA--------HMVVRREVLYKNDHSVEEGSIDPLGHCRG--FMTGFAEFLSDQGCLQRAEAHQALRCNDDRAIFELEDGTNVHFFFATVDVNKSIDAALEQFGTSPADYDFAVFNVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWSSDDQEAFLSSKATYIAVHSMMATMRDFTRGAAEGGSDPHFCLPGPPDQLGLLLLRVLWALFFE 652
            VEGI+C Y+         +VV  E L + D  V+E        CR   +       L +  C+      +A RC+DD ++FE ++G  +H+ FA  + NK  + AL+  GT  + YD  V N+GN P M   + L  A  + + G    W + Y+G+GDV +W  ++Q  F  S A ++ VH M+ +++  T+G  EG ++PHFC+PGPP+++G+LLL + WA++ E
Sbjct:  195 VEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVDEDL-----QCRSCVYSRKLRRTLLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEVSEVLRVANLLKEEGVPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAE 416
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BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.530e-38
Identity = 74/222 (33.33%), Postives = 126/222 (56.76%), Query Frame = 2 
Query:    2 VEGIMCRYAHMV---VRREVLYKNDHSVEEGSIDPLGHCRGFMTGFAE--FLSDQGCLQRAEAHQALRCNDDRAIFELEDGTNVHFFFATVDVNKSIDAALEQFGTSPADYDFAVFNVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWSSDDQEAFLSSKATYIAVHSMMATMRDFTRGAAEGGSDPHFCLPGPPDQLGLLLLRVLWALFFE 652
            VEGI+C Y+  +     R V+     + E+  +D    CRG +    +   L +  C+      +A  C+D+ ++FE ++G  +H+ FA  + NK  + AL+  GT  + YD  V N+GN P M   + L  A  + + G +  W + Y+G+GDV +W  ++Q  F  S A ++ VH M+ +++  T+G  EG ++PHFC+PGPP+++G+LLL + WA++ E
Sbjct:  191 VEGIVCAYSTSIRSRCLRVVVGGGSLAPEDALVDEDLQCRGCVNSHKQRNMLLEHECISEEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEVSEVLRVANLLKEEGVTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAE 412
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BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 4.950e-31
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = 2 
Query:  179 QALRCNDDRAIFELEDGTNVHFFFATVDVNKSIDAALEQFGTSPADYDFAVF-NVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWSSDDQEA-FLSSKATYIAVHSMMATMRDFTRGAAEGG--SDPHFCLPGPPDQLGLLLLRVLWALFFE 652
            + LRC+DD   F   +G  VHF+FA  D +K I  AL         Y  AVF N GN P++  +  LD+A  +  AG  F WL+TY+G+GD + W+S  +E  F  S A ++ V  M+  +   TR   E     DPHFC+PGPPD++G+LLL++LWAL  E
Sbjct:   23 ETLRCDDDHGEFFFSNGAVVHFYFANRDEDKRITDALAPHDKEDFSYYTAVFANPGNKPSVEADAVLDAAFELQAAGVPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHE 184
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BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.160e-24
Identity = 75/230 (32.61%), Postives = 115/230 (50.00%), Query Frame = 2 
Query:    2 VEGIMCRYAHMVVRREVLYKNDHSVEEGS-IDPLGH--CRG--FMTGFAEFLSDQGCL----QRAEAHQALRCNDDRAIFELEDGTNVHFFFATVDVNKSIDAALEQFGTSPADYDFAVF-NVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWSSDDQEA-FLSSKATYIAVHSMMATMRDFTRGAAEGG--SDPHFCLPGPPDQLGLLLLRVLWALFFE 652
            +E I+C +   VV + + + +  +  E + ++  G   CR     T F + L + GC+                         +G  VHF+FA  D +K I  AL         Y  AVF N GN P++  +  LD+A  +  AG  F WL+TY+G+GD + W+S  +E  F  S A ++ V  ++  +   TR   E    +DPHFC+PGPPD++G+LLL++LWAL  E
Sbjct:  221 LEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKDTLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEADAVLDAAVELQAAGVPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHE 450
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig841.19804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L5J2_9PHAE8.220e-4541.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBA5_9PHAE4.320e-4239.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2P7_ECTSI1.060e-3834.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF6_9PHAE4.530e-3833.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G974_ECTSI4.950e-3141.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAG2_9PHAE1.160e-2432.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig841contigF-serratus_M_contig841:362535..364704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1760
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig841.19804.1prot_F-serratus_M_contig841.19804.1Fucus serratus malepolypeptideF-serratus_M_contig841 363625..364691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.1090086-UTR-F-serratus_M_contig841:362534..3636241622932485.1090086-UTR-F-serratus_M_contig841:362534..363624Fucus serratus maleUTRF-serratus_M_contig841 362535..363624 -
1690964331.7531796-UTR-F-serratus_M_contig841:362534..3636241690964331.7531796-UTR-F-serratus_M_contig841:362534..363624Fucus serratus maleUTRF-serratus_M_contig841 362535..363624 -
1622932485.155762-UTR-F-serratus_M_contig841:364691..3647041622932485.155762-UTR-F-serratus_M_contig841:364691..364704Fucus serratus maleUTRF-serratus_M_contig841 364692..364704 -
1690964331.7932355-UTR-F-serratus_M_contig841:364691..3647041690964331.7932355-UTR-F-serratus_M_contig841:364691..364704Fucus serratus maleUTRF-serratus_M_contig841 364692..364704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932485.1268353-CDS-F-serratus_M_contig841:363624..3641051622932485.1268353-CDS-F-serratus_M_contig841:363624..364105Fucus serratus maleCDSF-serratus_M_contig841 363625..364105 -
1690964331.7634583-CDS-F-serratus_M_contig841:363624..3641051690964331.7634583-CDS-F-serratus_M_contig841:363624..364105Fucus serratus maleCDSF-serratus_M_contig841 363625..364105 -
1622932485.1392193-CDS-F-serratus_M_contig841:364515..3646911622932485.1392193-CDS-F-serratus_M_contig841:364515..364691Fucus serratus maleCDSF-serratus_M_contig841 364516..364691 -
1690964331.7808046-CDS-F-serratus_M_contig841:364515..3646911690964331.7808046-CDS-F-serratus_M_contig841:364515..364691Fucus serratus maleCDSF-serratus_M_contig841 364516..364691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig841.19804.1

>prot_F-serratus_M_contig841.19804.1 ID=prot_F-serratus_M_contig841.19804.1|Name=mRNA_F-serratus_M_contig841.19804.1|organism=Fucus serratus male|type=polypeptide|length=219bp
MCRYAHMVVRREVLYKNDHSVEEGSIDPLGHCRGFMTGFAEFLSDQGCLQ
RAEAHQALRCNDDRAIFELEDGTNVHFFFATVDVNKSIDAALEQFGTSPA
DYDFAVFNVGNLPAMPTEQTLDSAQRIHQAGGSFVWLTTYDGQGDVRSWS
SDDQEAFLSSKATYIAVHSMMATMRDFTRGAAEGGSDPHFCLPGPPDQLG
LLLLRVLWALFFESRART*
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mRNA from alignment at F-serratus_M_contig841:362535..364704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig841.19804.1 ID=mRNA_F-serratus_M_contig841.19804.1|Name=mRNA_F-serratus_M_contig841.19804.1|organism=Fucus serratus male|type=mRNA|length=2170bp|location=Sequence derived from alignment at F-serratus_M_contig841:362535..364704- (Fucus serratus male)
GGTAGAAGGAATAATGTGCCGTTACGCACACATGGTGGTAAGACGCGAAG
TGCTCTACAAGAACGACCACTCTGTGGAGGAGGGCTCTATTGACCCCTTA
GGTCACTGTAGAGGCTTTATGACAGGCTTTGCGGAGTTCCTCAGCGACCA
AGGCTGCTTGCAGCGAGCGGAGGCCCACCAGGCCTTGAGGTGCGGTGTTT
TGTTTCCTTCAAACTTACCGTATATAAGTAGTCTTCCCTGAGTACACAGA
ATTTCTGCCACGTGATGTAATGGTAACGTGATGTACATGCCATTATAGTA
CTATTTGATGTAGTACCGGTGGTACATGTAACGGCGGTGTAATGTCGCAT
TGCTCCAGTCCCTTTATATGTTCACATGGCAATTTTTCAGCTTGTGTCTG
TTGTGTTTAGTCACAATGGTTTCGACTTGAAGGGGGACCTGTATACTGTT
ACACAGTATCCAGAAGTTCCTTTCCGTAGCTTTGGCGAACGTATGATACG
TTCACCTGGAGATCGCTGCATTCAGGAACTCGGCATCCATCACGCTATGT
TAGGAAGAAAGAATACCGGTTTACTTACATTCCTTACCGGCCTTACCAGG
TGCAACGACGACCGAGCAATTTTCGAGCTCGAGGACGGAACCAATGTTCA
TTTCTTCTTCGCGACGGTGGATGTCAATAAGTCCATCGATGCCGCTCTAG
AGCAGTTCGGTACCTCGCCGGCCGACTACGACTTCGCCGTTTTCAACGTG
GGCAATCTCCCGGCCATGCCTACGGAACAAACCCTCGATTCTGCTCAGCG
CATCCACCAGGCGGGAGGATCGTTTGTGTGGCTTACCACGTACGACGGCC
AGGGAGACGTCCGCAGTTGGAGTTCCGATGATCAAGAGGCGTTCCTATCC
TCTAAAGCGACGTACATCGCCGTACACTCCATGATGGCTACCATGAGAGA
CTTCACCAGGGGCGCGGCGGAAGGTGGCAGTGATCCACACTTCTGTCTCC
CGGGCCCTCCCGATCAGCTGGGGCTTCTTCTACTGCGTGTTCTGTGGGCA
TTATTTTTCGAAAGTCGTGCGCGCACGTAAAAAGCTGTCACGCTATCACA
CAGAACAGCACATGTTTTTGAACTGATGAAATTCCAACCAATGGGGTGAA
AGAAACTCCTCGTGGTGAAAATCATTGCATCCCTGGGCTTCTATTATTAG
TGTTTCTCGGGGGTAAAACCATATTCCGTTGTTCTTACGTTGTGTGTCTT
GTCCTGGGTGTTGTGGTTGTGTGTCTATAGGCTGGTTGACTTGAGTTGGA
GTTTGGTTGAGCTTGGCGTTTTGAGGGAGGGAGTGTTATTTCTTCATCCA
CGGTCCGTTACTGCCTTTATGCTATTTCACACTCGACGCAAACTGCCGTG
ACTGACTTATCTGCGATCGCTACCTCAGACCAATCGTGATCCTGTCTTTT
AAGTTTTGCTTTCCTTTCTTCTGTAACTTACTGCCGCACCTGGCGTTTCA
AGACACGGTAAAATAGGACCTTCGACGTAATTATTCCTACATCTCAGGAA
GTGCTGTACAAGTACCATGTTTTGATCTCCGTATATCCCGTTGAAATTAT
AGATATTTGTTTTTAGTGCAGAGCTGGCAACCAATCTCTATGGCGGTTTT
TGAGCTTTAGAAAAGCAGTAGAGCTCTAGAAGCAATGCTTTGGCTCGCTC
CCGTCTTCTTTCGGCATGGTTTGGCATGTTTCCTACGTCCTACTGCACTT
GCTATTAACAGAGCTAAATAGTTGAAATGGCTCCGCGCAAAGGCTTCGGG
AAGTGACGCCCCTTTTCCTGGTTTGCCTAGACTTTACATGGAGCTAAGGT
CAGAATCGTTTTGGCGGCTTGATTCTGTTCTCATGAATACCTACACCATC
TATGTACCATCTATCTAGATATAGGTATAGACATTTGCGGCATATGTTAG
GTACAAGTTACCTGTATGTTCGTATATGCCATTCACTCTTGACTAATTGG
TATAGTTAAACAGAGTACACAGTAAGTTTTGGGCTATTACTTCGAATCGG
GCTTATATTAATAGTACGAGTAACGGTTACTGGATGGGTTGATTGGTTGA
GTTTGTTACTGGTAACTATCAGTCCGCGTGGACATGTCTCTCAGGAGTTT
TTGATAGGTTTACCTTTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig841:362535..364704-

>mRNA_F-serratus_M_contig841.19804.1 ID=mRNA_F-serratus_M_contig841.19804.1|Name=mRNA_F-serratus_M_contig841.19804.1|organism=Fucus serratus male|type=CDS|length=1314bp|location=Sequence derived from alignment at F-serratus_M_contig841:362535..364704- (Fucus serratus male)
ATGTGCCGTTACGCACACATGGTGGTAAGACGCGAAGTGCTCTACAAGAA
CGACCACTCTGTGGAGGAGGGCTCTATTGACCCCTTAGGTCACTGTAGAG
GCTTTATGACAGGCTTTGCGGAGTTCCTCAGCGACCAAGGCTGCTTGCAG
CGAGCGGAGGCCCACCAGGCCTTGAGATGTGCCGTTACGCACACATGGTG
GTAAGACGCGAAGTGCTCTACAAGAACGACCACTCTGTGGAGGAGGGCTC
TATTGACCCCTTAGGTCACTGTAGAGGCTTTATGACAGGCTTTGCGGAGT
TCCTCAGCGACCAAGGCTGCTTGCAGCGAGCGGAGGCCCACCAGGCCTTG
AGGTGCAACGACGACCGAGCAATTTTCGAGCTCGAGGACGGAACCAATGT
TCATTTCTTCTTCGCGACGGTGGATGTCAATAAGTCCATCGATGCCGCTC
TAGAGCAGTTCGGTACCTCGCCGGCCGACTACGACTTCGCCGTTTTCAAC
GTGGGCAATCTCCCGGCCATGCCTACGGAACAAACCCTCGATTCTGCTCA
GCGCATCCACCAGGCGGGAGGATCGTTTGTGTGGCTTACCACGTACGACG
GCCAGGGAGACGTCCGCAGTTGGAGTTCCGATGATCAAGAGGCGTTCCTA
TCCTCTAAAGCGACGTACATCGCCGTACACTCCATGATGGCTACCATGAG
AGACTTCACCAGGGGCGCGGCGGAAGGTGGCAGTGATCCACACTTCTGTC
TCCCGGGCCCTCCCGATCAGCTGGGGCTTCTTCTACTGCGTGTTCTGTGG
GCATTATTTTTCGAAAGTCGTGCGCGCACGTAAGTGCAACGACGACCGAG
CAATTTTCGAGCTCGAGGACGGAACCAATGTTCATTTCTTCTTCGCGACG
GTGGATGTCAATAAGTCCATCGATGCCGCTCTAGAGCAGTTCGGTACCTC
GCCGGCCGACTACGACTTCGCCGTTTTCAACGTGGGCAATCTCCCGGCCA
TGCCTACGGAACAAACCCTCGATTCTGCTCAGCGCATCCACCAGGCGGGA
GGATCGTTTGTGTGGCTTACCACGTACGACGGCCAGGGAGACGTCCGCAG
TTGGAGTTCCGATGATCAAGAGGCGTTCCTATCCTCTAAAGCGACGTACA
TCGCCGTACACTCCATGATGGCTACCATGAGAGACTTCACCAGGGGCGCG
GCGGAAGGTGGCAGTGATCCACACTTCTGTCTCCCGGGCCCTCCCGATCA
GCTGGGGCTTCTTCTACTGCGTGTTCTGTGGGCATTATTTTTCGAAAGTC
GTGCGCGCACGTAA
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