mRNA_F-serratus_M_contig841.19794.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig841.19794.1
Unique NamemRNA_F-serratus_M_contig841.19794.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A6H5L486_9PHAE (TMP-TENI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L486_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.050e-45
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 LSSPLIELITPDSCSSSA--DVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYVQV 390
            L+ PL+ELITPD C+SS+  + S LV +++KA+ GGV LVQLRD +S  +S A LA  +  + + RA FV+NG+P  ARA GADGVHLPE MMDRL  LR  GEWPR+VGCSVHS  AAV AARLG DYVQV
Sbjct:  100 LAPPLLELITPDGCASSSFSETSSLVKNIQKAVAGGVSLVQLRDYKSGAKSKADLAVRISTALKGRALFVVNGEPDTARANGADGVHLPERMMDRLVGLRGQGEWPRIVGCSVHSVAAAVEAARLGADYVQV 231          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A836CN05_9STRA (Thiamine-phosphate pyrophosphorylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN05_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.030e-24
Identity = 62/130 (47.69%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    4 SSPLIELITPDSCSSSADVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLAC-ILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYVQV 390
            S P++ELITPD  S++   + L   ++ A+ GGV+LVQ+RD  S  +S   LA  +L D   E    V+NG   AA A GA GVHLPE ++  +   R++     VVGCSVHS EAAV AARLG DY+QV
Sbjct:   40 SGPVLELITPDG-SAAQPSTHLAQKIRAAVSGGVRLVQIRDTTSSAESKHALATQLLLDLAAEPCCIVLNGGVDAALACGAHGVHLPERLLPEVTRAREA---LAVVGCSVHSVEAAVAAARLGADYLQV 165          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A641ACW0_9CHLR (Thiamine-phosphate synthase n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A641ACW0_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 1.440e-17
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   10 PLIELITPDSCSSSADVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPE-HMMD-RLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYVQV 390
            P++ L+T  + +S  D+  +V     A+ GGV +VQLRD+   G    K+A  LRD T+++A F++NGD   A+   ADG+H PE H +D    +L+++     ++G SVHS EAAV AA  G+DY+ V
Sbjct:   10 PILCLVTNRNRTSKRDLGFIVDD---AISGGVNMVQLRDKDMEGPEKLKVAISLRDLTKDKAMFMVNGDVDLAKEVAADGIHFPEDHNLDSNCQNLKNNF----IIGRSVHSFEAAVEAASEGMDYLTV 131          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A7S3XPQ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPQ6_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 9.980e-16
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   10 PLIELITPDS-CSS--SADVSKLVHS-VKKALDGGVKLVQLRDRRSHGQSIAKLACILRDST-RERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYVQV 390
            P + LITP+  C+   S +  +++ S +  A++GGV LVQLRD+ +  + +A +   +RD   R  A F++NGD   A A  ADGVHLPE  +    +   + ++  V+GCSVHS+EAA+ A  +  DY+ V
Sbjct:    4 PFLCLITPEGLCTEKYSEEAKRIILSRIGLAVEGGVSLVQLRDKTATREELATMGKRIRDVVDRSSAIFMVNGDLDVAIACKADGVHLPEAQVQDFINSYKNKKFNGVLGCSVHSSEAALRAMEVKADYIVV 135          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A0S8EJD6_9CHLR (Thiamine-phosphate synthase n=1 Tax=Dehalococcoidia bacterium SM23_28_2 TaxID=1703396 RepID=A0A0S8EJD6_9CHLR)

HSP 1 Score: 74.3 bits (181), Expect = 1.030e-13
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   67 LVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYVQV 390
            L  +V +A+DGGV +VQLR++      +  LA  LR  T ++A  ++N     A    ADGVHLPE      A  R +G+   ++G SVHSAE AV A   G DYVQV
Sbjct:   22 LEEAVAQAVDGGVNVVQLREKDLTAAQLIPLADRLRAITEDKALLIVNTHLDVALVCAADGVHLPERGPSVAAMRRLAGDG-FIIGRSVHSAEEAVRAEEEGADYVQV 128          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A7J2S481_9ARCH (Thiamine-phosphate synthase n=1 Tax=Thermoplasmatales archaeon TaxID=2268204 RepID=A0A7J2S481_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 1.190e-12
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   46 SSADVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYV 384
            SS     +V  VK ALD G + +Q R++R   + + K A IL++  + +A F++N     A A  ADGVHL +  M    + R  G+  +++G +VH+ E AV A R+G DYV
Sbjct:    5 SSISKKGIVSDVKDALDAGCRFIQYREKRKSTREMVKEAQILKNICKNKAVFLVNDRVDIALAVDADGVHLGQDDMPVSFARRLLGD-KKIIGLTVHNVEEAVEAERMGADYV 116          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A5N9CYF9_9CHLR (Thiamine phosphate synthase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A5N9CYF9_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 1.640e-12
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   55 DVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWP-RVVGCSVHSAEAAVNAARLGVDYV 384
            D  +L   V  A+ GGV LVQ+R +    Q  ++LA ++      RA  V+NGDP+ AR+ GA GVHLPE       S   S   P  +VG SVHS+ AAV A   G DY+
Sbjct:   66 DWDELARRVGAAVRGGVGLVQVRAKALDPQKQSRLASLIVSVVGARAQVVVNGDPEMARSSGAAGVHLPEISAGASVSEARSQLGPDALVGRSVHSSTAAVQAEADGADYI 176          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A2E5J2Y8_9CHLR (Thiamine-phosphate synthase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2E5J2Y8_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 7.400e-12
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   67 LVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYV 384
            L  +++ A+DGG+ +VQLR++      + + A  LR  T  R+ F++N + + A   GADG+HLP++    ++ +R S     ++G S H   +A  AAR GVDY+
Sbjct:   23 LEDTIEYAIDGGIDMVQLREKELTRDELLRSADKLRSITSGRSKFLVNSNLEVAIKSGADGIHLPQNSTISVSDIRRSTPNHFLIGKSAHDQASATAAARDGVDYI 128          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A662K6Y0_9ARCH (Thiamine-phosphate synthase n=2 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A662K6Y0_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 1.630e-11
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   46 SSADVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVDYV 384
            SS   +  +  VK A+D G K+VQ R++    + + K A  L+   ++RA+F+++     A A  ADGVHL ++ M    + R  G+  +++G +VH+ E AV A +LGVDYV
Sbjct:   22 SSLSKNGTLFDVKNAVDAGCKIVQYREKNKSTRDMIKEAEQLKKLCKDRAFFLVDDRVDVALAVDADGVHLGQNDMPVEIARRLLGD-EKIIGLTVHNVEEAVEAEKLGVDYV 133          
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Match: A0A2H5YC60_9BACT (Thiamine-phosphate synthase n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YC60_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 2.210e-11
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 1
Query:   10 PLIELITPDSCSSSADVSKLVHSVKKALDGGVKLVQLRDRRSHGQSIAKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDSGEWPRVVGCSVHSAEAAVNAARLGVD 378
            P + L+T      S D   LV +V +A++GGV LVQ+R++   G  +  LA  LR+ TR RA   IN     A    ADGVHLPE  +   A  R +G    ++G SVHS EA   A + G D
Sbjct:    6 PCLALVTDRHLYPSQDA--LVEAVAQAVEGGVDLVQVREKDLPGGHLLALAVRLREVTRGRALLFINERADVALLSEADGVHLPEAGLPPSAVRRLAGRR-LLIGASVHSVEAGYRAEQEGAD 125          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig841.19794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L486_9PHAE5.050e-4562.12TMP-TENI domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CN05_9STRA9.030e-2447.69Thiamine-phosphate pyrophosphorylase n=1 Tax=Tribo... [more]
A0A641ACW0_9CHLR1.440e-1740.31Thiamine-phosphate synthase n=1 Tax=SAR202 cluster... [more]
A0A7S3XPQ6_HETAK9.980e-1638.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0S8EJD6_9CHLR1.030e-1342.59Thiamine-phosphate synthase n=1 Tax=Dehalococcoidi... [more]
A0A7J2S481_9ARCH1.190e-1237.17Thiamine-phosphate synthase n=1 Tax=Thermoplasmata... [more]
A0A5N9CYF9_9CHLR1.640e-1242.34Thiamine phosphate synthase n=2 Tax=Chloroflexi Ta... [more]
A0A2E5J2Y8_9CHLR7.400e-1234.91Thiamine-phosphate synthase n=2 Tax=Chloroflexi Ta... [more]
A0A662K6Y0_9ARCH1.630e-1136.28Thiamine-phosphate synthase n=2 Tax=Thermoplasmata... [more]
A0A2H5YC60_9BACT2.210e-1139.84Thiamine-phosphate synthase n=1 Tax=bacterium HR23... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig841contigF-serratus_M_contig841:61056..61445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue3.2e-36
Seed eggNOG ortholog2880.D7FV85
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thiamine monophosphate synthase
EggNOG OGs2S9Y2@2759,COG0352@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932483.1302083-CDS-F-serratus_M_contig841:61055..614451622932483.1302083-CDS-F-serratus_M_contig841:61055..61445Fucus serratus maleCDSF-serratus_M_contig841 61056..61445 -
1690964330.773913-CDS-F-serratus_M_contig841:61055..614451690964330.773913-CDS-F-serratus_M_contig841:61055..61445Fucus serratus maleCDSF-serratus_M_contig841 61056..61445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig841.19794.1prot_F-serratus_M_contig841.19794.1Fucus serratus malepolypeptideF-serratus_M_contig841 61056..61445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig841.19794.1

>prot_F-serratus_M_contig841.19794.1 ID=prot_F-serratus_M_contig841.19794.1|Name=mRNA_F-serratus_M_contig841.19794.1|organism=Fucus serratus male|type=polypeptide|length=130bp
LSSPLIELITPDSCSSSADVSKLVHSVKKALDGGVKLVQLRDRRSHGQSI
AKLACILRDSTRERAWFVINGDPKAARAWGADGVHLPEHMMDRLASLRDS
GEWPRVVGCSVHSAEAAVNAARLGVDYVQV
back to top

mRNA from alignment at F-serratus_M_contig841:61056..61445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig841.19794.1 ID=mRNA_F-serratus_M_contig841.19794.1|Name=mRNA_F-serratus_M_contig841.19794.1|organism=Fucus serratus male|type=mRNA|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig841:61056..61445- (Fucus serratus male)
CTGTCGTCGCCTTTGATAGAGCTCATTACGCCGGATTCTTGTTCTTCTTC AGCCGACGTGTCGAAGCTTGTTCACAGCGTCAAGAAAGCGCTGGATGGCG GCGTGAAGCTTGTCCAGCTGCGGGACCGCAGGTCGCACGGTCAGAGCATC GCCAAACTCGCTTGCATTCTTCGCGATTCGACCCGAGAAAGGGCGTGGTT CGTGATCAACGGCGATCCGAAGGCCGCTCGAGCCTGGGGTGCGGATGGGG TACATTTGCCGGAGCACATGATGGATCGCTTAGCCAGTCTGCGTGATTCT GGGGAATGGCCCCGGGTGGTGGGTTGCTCCGTTCACTCTGCTGAAGCCGC TGTGAACGCCGCAAGACTAGGTGTGGACTATGTTCAGGTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig841:61056..61445-

>mRNA_F-serratus_M_contig841.19794.1 ID=mRNA_F-serratus_M_contig841.19794.1|Name=mRNA_F-serratus_M_contig841.19794.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig841:61056..61445- (Fucus serratus male)
CTGTCGTCGCCTTTGATAGAGCTCATTACGCCGGATTCTTGTTCTTCTTC
AGCCGACGTGTCGAAGCTTGTTCACAGCGTCAAGAAAGCGCTGGATGGCG
GCGTGAAGCTTGTCCAGCTGCGGGACCGCAGGTCGCACGGTCAGAGCATC
GCCAAACTCGCTTGCATTCTTCGCGATTCGACCCGAGAAAGGGCGTGGTT
CGTGATCAACGGCGATCCGAAGGCCGCTCGAGCCTGGGGTGCGGATGGGG
TACATTTGCCGGAGCACATGATGGATCGCTTAGCCAGTCTGCGTGATTCT
GGGGAATGGCCCCGGGTGGTGGGTTGCTCCGTTCACTCTGCTGAAGCCGC
TGTGAACGCCGCAAGACTAGGTGTGGACTATGTTCAGGTGCTGTCGTCGC
CTTTGATAGAGCTCATTACGCCGGATTCTTGTTCTTCTTCAGCCGACGTG
TCGAAGCTTGTTCACAGCGTCAAGAAAGCGCTGGATGGCGGCGTGAAGCT
TGTCCAGCTGCGGGACCGCAGGTCGCACGGTCAGAGCATCGCCAAACTCG
CTTGCATTCTTCGCGATTCGACCCGAGAAAGGGCGTGGTTCGTGATCAAC
GGCGATCCGAAGGCCGCTCGAGCCTGGGGTGCGGATGGGGTACATTTGCC
GGAGCACATGATGGATCGCTTAGCCAGTCTGCGTGATTCTGGGGAATGGC
CCCGGGTGGTGGGTTGCTCCGTTCACTCTGCTGAAGCCGCTGTGAACGCC
GCAAGACTAGGTGTGGACTATGTTCAGGTG
back to top