prot_F-serratus_M_contig841.19793.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig841.19793.1
Unique Nameprot_F-serratus_M_contig841.19793.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length378
Homology
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 4.970e-168
Identity = 250/391 (63.94%), Postives = 291/391 (74.42%), Query Frame = 0
Query:    1 MRYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKALYKRCLPEDPLCPTVGEVEDVLRRRLVQTSRRLR-------------QASSKLSIPNESLSLCHGGRGVIEAVGSSEDVTDGEHDTHSEAQASTSDRRIVVESASLLEGLSRITGICIDFARRDLHEAPEGADVE--WEKVFVDEERSLARGRTVPPNEAHMICGYRKSQIERLGLEYSTM 376
            MRY++LHKPRGCVTSTVDDTGRGRPTVYDVA+AAGVPN GPVGRLDFDTSG+LLF DD+KLKKAI SP YKG+A VG+VPS+EKVYH LVAGTI P+DKG+D L+EPLH +RKLDGP G WTKPAEARVL+TKTF+ GQPVPWRFKPGT A+ITWIE+VLREGKNRQIRRLCRRSE+ELTRLHR+SVGPIVLGD++E  CRELTR EV+ALYKRCLPEDPLCPT+  V+D+L+ RL QT+RR+R             + SS + +P + +          +   +     DGE             RR  V++ +  E L+ I    IDFARRDLHE P G D E         E+ SLA+ R VPPNE HM+CGYR SQIERLGL Y TM
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQKDMPERPTAEDAEQRRAAK--ARDGERGCPCRTTQGPGRRR--VKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 2.810e-87
Identity = 153/273 (56.04%), Postives = 178/273 (65.20%), Query Frame = 0
Query:  119 GVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKALYKRCLPEDPLCPTVGEVEDVLRRRLVQTSRRLRQA-------------SSKLSIPNESLSLCHGGRGVIEAVGSSEDVTDGEHDTHSEAQASTSDRRIVVESASLLEGLSRITGICIDFARRDLHEAPEGADVE--WEKVFVDEERSLARGRTVPPNEAHMICGYRKSQIERLGLEYSTM 376
            G WTKPAEARVL+TKTF+ GQPVPWRFKPGT A+ITWIE+VLREGKNRQIRRLCRRSE+ELTRLHR+SVGPIVLGD+ E  CRELTR EV+ALYKRCLPEDPLCPT+  V+D+L+ RL QT+RR+R A             SS + +P +            +   +   V DGE              R    +    E L+ I    IDF+RRDLHE P G D E         E+ SLA+ R VPPNE HM+CGYR SQIERLGL Y TM
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDAPERPTREDAEQRWAAK--VRDGECGCPXXXXXXXXXXRAKAFAGE--EDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A6H5L0P5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.130e-54
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 0
Query:    1 MRYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVD 102
            MRY++LHKPRGCVTSTVDDTGRGRPTVYDVA+AAGVPN GPVGRLDFDTSG+LLF DD+KLKKAI SP YKG+A VG+VPS+EKVYH LVAGTI P+DKGV+
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGVN 102          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 140 bits (352), Expect = 3.890e-36
Identity = 85/217 (39.17%), Postives = 120/217 (55.30%), Query Frame = 0
Query:    5 LLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKALYKRCLPEDPL 221
            +++KP GC+T+  DD   GR TVY    A   P LG VGRLD++T GLLLF DD +L +A+ +  + G         +EKVYH  + G ++  D  +  L EPL       GP G  T+PA ARV+  +                    +WIELV+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+L+   CR L R EV ALY   L +D L
Sbjct:    1 MMNKPAGCITARTDD--EGRQTVYAHVPAH-FPALGHVGRLDYNTEGLLLFTDDGRLSQALLNKAFSGAP-------VEKVYHVKIKGIVEDGDARLARLEEPLK-----SGP-GKTTEPARARVVERRD-----------------KTSWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A328C9E6_9DELT (Pseudouridine synthase n=9 Tax=Bradymonadales TaxID=1779134 RepID=A0A328C9E6_9DELT)

HSP 1 Score: 132 bits (332), Expect = 3.030e-33
Identity = 84/224 (37.50%), Postives = 117/224 (52.23%), Query Frame = 0
Query:    1 MRYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKV----GSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKALYKRCLPEDP 220
            M  ++++KP GC+T+ VD     RPTVYD       P L  VGRLDF+T GLLLF DD KL +A+ + +Y G   +      +  IEKVYH  V   + PD   +  L+EPL          G +T PA    +  ++                 S TWI + + EG++RQ+R+LC RS  ++ +L RV +GP+ LG+LK   CRELT  E+  LY      DP
Sbjct:    1 MPAFIMNKPPGCITARVDF--EDRPTVYDHVPKHFEP-LPHVGRLDFNTEGLLLFTDDGKLAQALLNKDYAGPTSMEETSAELAPIEKVYHVKVKAKLGPDHPVLAALQEPLEYE------PGKFTAPATTGWVAERS-----------------SCTWISITITEGRHRQVRKLCERSGLQIRKLRRVRLGPLGLGELKLRWCRELTDEELTELYVAAFGHDP 198          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7)

HSP 1 Score: 132 bits (331), Expect = 7.370e-32
Identity = 87/210 (41.43%), Postives = 120/210 (57.14%), Query Frame = 0
Query:    2 RYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKAL 211
            RY +LHKPRG VT+  D   +GRP+V D  R AG+  L PVGRLDFD+ GLLL  DD +L  A+  P ++          ++KVYH LV G ++P  + +  LR+ + L    DGP     +   AR+L             R +PG      W+E+VLREG+ RQ+RR+CR   +++ RL RV+VGP+ LG L     R L+R EV+AL
Sbjct:   68 RYVMLHKPRGMVTTLRDP--QGRPSVGDFCRRAGLRGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEP--QRLRRLRDGVLLD---DGP----ARARSARIL-------------RPRPGGG----WVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEAL 239          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A4P7GUD9_9FIRM (Pseudouridine synthase n=2 Tax=Firmicutes TaxID=1239 RepID=A0A4P7GUD9_9FIRM)

HSP 1 Score: 127 bits (319), Expect = 1.340e-30
Identity = 85/210 (40.48%), Postives = 116/210 (55.24%), Query Frame = 0
Query:    2 RYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKAL 211
            RY L HKPRG VT+  D   +GRP+V D  R  G+  L PVGRLD D+ GLLL  DD +L  A+  P ++          ++KVYH LV G ++   + +  LR+ + L    DGP     +   AR+L             R +PG      W+E+VLREG+ RQ+RR+CR   +++ RL RV+VGP+ LG L     R LTR EV+AL
Sbjct:   68 RYVLFHKPRGMVTTLRDP--QGRPSVGDFCRRVGLAGLHPVGRLDVDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEA--RRLRRLRDGVLLD---DGP----ARARAARIL-------------RRRPGGG----WVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLAPGRWRPLTRAEVRAL 239          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A2W4K569_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4K569_9FIRM)

HSP 1 Score: 123 bits (309), Expect = 2.300e-29
Identity = 82/212 (38.68%), Postives = 113/212 (53.30%), Query Frame = 0
Query:    2 RYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKALYK 213
            RY +LHKPRG +T+  D   +GRPTV ++ R  G+  L PVGRLDFD+ GLLL  DD +L  A+  P ++          + KVYH LV G +  D   +  LRE + L    DGP     + A AR               R +P   A  TW+E+ + EG+ RQ+RR+C    + + RL RV+VGP+ LG+L     R L   EV+AL +
Sbjct:   68 RYVMLHKPRGVLTTMYDP--QGRPTVAEICRRQGLEGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHQ----------VPKVYHVLVRGQVTADR--LRRLREGVRLE---DGP----ARAATAR---------------RLRPENGA--TWVEITIHEGRKRQVRRMCAAVGWRVLRLVRVAVGPLRLGNLAPGQLRPLRPEEVEALAR 241          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: K6NYC6_9FIRM (Pseudouridine synthase n=2 Tax=Thermaerobacter TaxID=73918 RepID=K6NYC6_9FIRM)

HSP 1 Score: 125 bits (313), Expect = 3.200e-29
Identity = 85/210 (40.48%), Postives = 115/210 (54.76%), Query Frame = 0
Query:    2 RYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKAL 211
            RY L HKPRG VT+  D   +GRP V D  R  G+  L PVGRLDFD+ GLLL  DD +L  A+  P ++          ++KVYH LV G + P    +  LR+ + L    DGP     +   ARVL             R +PG      W+E+VLREG+ RQ+RR+C+   +++ RL RV+VGP+ LG L     R L+R EV++L
Sbjct:   68 RYVLFHKPRGMVTTLRDP--QGRPNVGDFCRRHGLQGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGDLDP--ARLRRLRDGVLLD---DGP----ARARIARVL-------------RPRPGGG----WVEVVLREGRKRQVRRMCQAVGWQVVRLVRVAVGPLRLGRLAAGAWRPLSRQEVESL 239          
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Match: A0A6B2H1S4_9BACT (Pseudouridine synthase n=1 Tax=Pontibacter fetidus TaxID=2700082 RepID=A0A6B2H1S4_9BACT)

HSP 1 Score: 119 bits (297), Expect = 6.510e-28
Identity = 74/211 (35.07%), Postives = 115/211 (54.50%), Query Frame = 0
Query:    1 MRYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTSGLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKGVDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTSASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCCRELTRGEVKAL 211
            M+Y +L+KP   +T   D+TGR   T+ D  +   +PN+ PVGRLD+D+ G++L  DD  L+  +  P +K          IEK Y   V G   P ++ ++ELR+ + +       +G+ T PA+AR+L  +     +  P RF+    A  TW+E+ + +G NRQ+RR+     Y   RL R S+GP+ +GDL+    RELT  E+  L
Sbjct:    1 MKYIILNKPYEVLTQFTDETGRA--TLKDYVK---IPNIYPVGRLDYDSEGMVLLTDDKTLQHRLSDPKFK----------IEKTYWVQVDGL--PTEEALEELRQGIII-------KGIRTAPAKARILEPEPNVWERSTPIRFRKEIPA--TWVEVKISQGMNRQVRRMTAAVGYPTLRLIRPSIGPLTIGDLQPGEYRELTADEISKL 185          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig841.19793.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI4.970e-16863.94Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE2.810e-8756.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0P5_9PHAE3.130e-5483.33PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A838IEP5_9DELT3.890e-3639.17Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
A0A328C9E6_9DELT3.030e-3337.50Pseudouridine synthase n=9 Tax=Bradymonadales TaxI... [more]
E6SKM7_THEM77.370e-3241.43Pseudouridine synthase n=1 Tax=Thermaerobacter mar... [more]
A0A4P7GUD9_9FIRM1.340e-3040.48Pseudouridine synthase n=2 Tax=Firmicutes TaxID=12... [more]
A0A2W4K569_9FIRM2.300e-2938.68Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
K6NYC6_9FIRM3.200e-2940.48Pseudouridine synthase n=2 Tax=Thermaerobacter Tax... [more]
A0A6B2H1S4_9BACT6.510e-2835.07Pseudouridine synthase n=1 Tax=Pontibacter fetidus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 3..172
e-value: 6.1E-12
score: 45.9
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 67..193
e-value: 2.2E-38
score: 133.7
NoneNo IPR availableGENE3D3.30.70.580coord: 5..201
e-value: 2.2E-38
score: 133.7
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..211
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..211
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 3..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig841contigF-serratus_M_contig841:33425..46901 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig841.19793.1mRNA_F-serratus_M_contig841.19793.1Fucus serratus malemRNAF-serratus_M_contig841 33398..47530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig841.19793.1 ID=prot_F-serratus_M_contig841.19793.1|Name=mRNA_F-serratus_M_contig841.19793.1|organism=Fucus serratus male|type=polypeptide|length=378bp
MRYYLLHKPRGCVTSTVDDTGRGRPTVYDVARAAGVPNLGPVGRLDFDTS
GLLLFMDDHKLKKAICSPNYKGRAKVGSVPSIEKVYHALVAGTIKPDDKG
VDELREPLHLTRKLDGPQGVWTKPAEARVLMTKTFEKGQPVPWRFKPGTS
ASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIVLGDLKESCC
RELTRGEVKALYKRCLPEDPLCPTVGEVEDVLRRRLVQTSRRLRQASSKL
SIPNESLSLCHGGRGVIEAVGSSEDVTDGEHDTHSEAQASTSDRRIVVES
ASLLEGLSRITGICIDFARRDLHEAPEGADVEWEKVFVDEERSLARGRTV
PPNEAHMICGYRKSQIERLGLEYSTMI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR020103PsdUridine_synth_cat_dom_sf