mRNA_F-serratus_M_contig840.19791.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig840.19791.1
Unique NamemRNA_F-serratus_M_contig840.19791.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.540e-14
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDFDILSLADT---CNRPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYH 246
            D+FGTF  S +T+F   L G DF+   LA +   C+ P  A  A ++LL+ Y I M ++LLNLLIAVLST H KV A AE+E+H
Sbjct: 1234 DAFGTFGDSFVTVFTYALGGPDFEAFQLAGSDCRCDLPEGARNAGIFLLVVYMITMTVVLLNLLIAVLSTTHGKVYANAEKEFH 1317          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.160e-13
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDFDILSLADT---CNRPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL 249
            D+FGTF  SLLT+F + L G +FD+   A +   CN P  A  A + +++ Y I M+++LLNLLIAVLST H +V   AE+E+HL
Sbjct: 1100 DAFGTFGDSLLTVFSSALGGPEFDLFDDAGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHL 1184          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.170e-13
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDFDILSLADT---CNRPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL 249
            D+FGTF  S +T+F A L G DF++   A +   C  P  A  A ++L++ Y +IMA++LLNLLIAVLST H+KV    ++E+HL
Sbjct: 1299 DAFGTFGRSFVTVFSAALGGPDFELYEAAGSECRCKLPDGAQEAGIFLMVVYMVIMAVVLLNLLIAVLSTAHSKVYDNGDKEFHL 1383          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.310e-11
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDFDILSLADT---CNRPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL 249
            D+FGTF  S +T+F + L G + D+     +   CN P  A  A + +++ Y I M+++LLNLLIAVLST H +V   AE+E+HL
Sbjct:  468 DAFGTFGDSFVTVFSSALGGPEIDLFDDVGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHL 552          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.080e-10
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDFDILSLAD---TCNRPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL 249
            +S+ T   SLL +F +ML   +FD    AD   TC  P+W + A + LL  Y ++ AIL+LNLLIAVLSTVH  V   A  E+HL
Sbjct: 1528 ESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHL 1611          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.750e-10
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDF-DILSLADTCN---RPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL 249
            +SFG+F ++ L++FEA L  F F D   +   C     P  A  A  +LL+AY +++A+++LNLL+AVL+T H +V+A  E+E+HL
Sbjct:   45 ESFGSFGTAFLSVFEAPLGEFSFEDFHDVGTQCPDNPAPGRASDAGTFLLVAYLVVLAVVMLNLLVAVLTTAHGEVNANGEKEFHL 130          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.850e-9
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDF-DILSLADTCN---RPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL 249
            +S+G+F ++ LT+F+A L  F F D   +   C     P  A  A  +LL+AY +++A+++LNLLIAVLST H +V A  E+E+HL
Sbjct: 1218 ESYGSFGTAFLTVFKAPLGEFKFEDFDDVGGQCPYNPSPGRASDAGTFLLVAYLVVLAVVMLNLLIAVLSTAHGEVYANGEKEFHL 1303          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 6.210e-6
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 DSFGTFWSSLLTLFEAMLSGFDF-DILSLADTCN---RPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAK 216
            +S+G+F ++LLT+F+A L  F F D   +   C     P  A  A  +LL+AY I++A+++LNLLIAVLST H +
Sbjct: 1216 ESYGSFGTALLTVFKAPLGEFKFEDFDDVGGQCPYNPSPGRASDAGTFLLVAYLIVLAVVMLNLLIAVLSTAHGE 1290          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.970e-5
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 VDSFGTFWSSLLTLFEAMLSGFDFDILSLADTCNRPTWAYGASVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEE 240
            +  + T++SS+LTLF +ML  F F++   A           A   L++ +  +M I LLNLLIA+L+T HA+++  A++E
Sbjct:  843 IAEYDTYYSSILTLFSSMLGNFSFEVFKGAPMAE-------AGEVLMVFFLCVMNITLLNLLIAILATAHARLEGNADKE 915          
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.970e-5
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 VDSFGTFWSSLLTLFEAMLSGFDFDILSLADTCNRPTWAYGA-SVWLLIAYEIIMAILLLNLLIAVLSTVHAKVDAKAEEEY 243
            VD+FG    + LTLF+AML   DF         + P   Y + +  L + Y +++A++LLNLLIAVLST H+KV+ KA++E+
Sbjct:  962 VDTFG---GTCLTLFKAMLGEVDF-------FGSFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEF 1033          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig840.19791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LH99_ECTSI8.540e-1450.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LH97_ECTSI1.160e-1348.24Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LHA0_ECTSI1.170e-1347.06Transient Receptor Potential Channel. Partial sequ... [more]
A0A6H5JTT3_9PHAE2.310e-1143.53Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FMR2_ECTSI2.080e-1047.06Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FNX2_ECTSI3.750e-1041.86Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JB40_9PHAE1.850e-943.02Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FX79_ECTSI6.210e-644.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LM43_ECTSI2.970e-536.25Ankyrin repeat Transient receptor potential channe... [more]
D7FLB1_ECTSI2.970e-542.68Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig840contigF-serratus_M_contig840:34475..34942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2880.D8LH99
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932482.5106673-CDS-F-serratus_M_contig840:34476..345211622932482.5106673-CDS-F-serratus_M_contig840:34476..34521Fucus serratus maleCDSF-serratus_M_contig840 34477..34521 -
1690964330.5207615-CDS-F-serratus_M_contig840:34476..345211690964330.5207615-CDS-F-serratus_M_contig840:34476..34521Fucus serratus maleCDSF-serratus_M_contig840 34477..34521 -
1622932482.5545633-CDS-F-serratus_M_contig840:34738..349421622932482.5545633-CDS-F-serratus_M_contig840:34738..34942Fucus serratus maleCDSF-serratus_M_contig840 34739..34942 -
1690964330.5355113-CDS-F-serratus_M_contig840:34738..349421690964330.5355113-CDS-F-serratus_M_contig840:34738..34942Fucus serratus maleCDSF-serratus_M_contig840 34739..34942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig840.19791.1prot_F-serratus_M_contig840.19791.1Fucus serratus malepolypeptideF-serratus_M_contig840 34477..34942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig840.19791.1

>prot_F-serratus_M_contig840.19791.1 ID=prot_F-serratus_M_contig840.19791.1|Name=mRNA_F-serratus_M_contig840.19791.1|organism=Fucus serratus male|type=polypeptide|length=83bp
VDSFGTFWSSLLTLFEAMLSGFDFDILSLADTCNRPTWAYGASVWLLIAY
EIIMAILLLNLLIAVLSTVHAKVDAKAEEEYHL
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mRNA from alignment at F-serratus_M_contig840:34475..34942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig840.19791.1 ID=mRNA_F-serratus_M_contig840.19791.1|Name=mRNA_F-serratus_M_contig840.19791.1|organism=Fucus serratus male|type=mRNA|length=468bp|location=Sequence derived from alignment at F-serratus_M_contig840:34475..34942- (Fucus serratus male)
GTGGATTCATTCGGAACCTTCTGGTCTTCACTTCTGACATTGTTCGAAGC CATGTTGAGTGGTTTCGATTTTGATATACTCAGTCTTGCCGACACCTGCA ACCGGCCGACGTGGGCCTACGGCGCGAGTGTGTGGCTACTGATAGCCTAC GAGATCATTATGGCTATACTTTTGCTCAACCTCTTGATCGCCGTCCTGAG CACGGTAAGTAGGTGCCATCCAGATAGTTGATATCGCATAATCTCTCCAG CGCCTTTTCTATCAATTAAAGCGATGAAGCGGATTTTTTGCAAACCATTG CATGCAAGCCGTTTGCAAAGTCGACCCCAACTCTTGTCTTGAAGGGAAAT TTTCGTGCATGGTGCTTGAGCACTTTCAGCATATCAAGCTAGCGTCCCCT CACCCGTGTTCGCATCAATAGGTCCATGCTAAAGTCGATGCAAAGGCCGA AGAGGAATACCATCTCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig840:34475..34942-

>mRNA_F-serratus_M_contig840.19791.1 ID=mRNA_F-serratus_M_contig840.19791.1|Name=mRNA_F-serratus_M_contig840.19791.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig840:34475..34942- (Fucus serratus male)
GTGGATTCATTCGGAACCTTCTGGTCTTCACTTCTGACATTGTTCGAAGC
CATGTTGAGTGGTTTCGATTTTGATATACTCAGTCTTGCCGACACCTGCA
ACCGGCCGACGTGGGCCTACGGCGCGAGTGTGTGGCTACTGATAGCCTAC
GAGATCATTATGGCTATACTTTTGCTCAACCTCTTGATCGCCGTCCTGAG
CACGGTGGATTCATTCGGAACCTTCTGGTCTTCACTTCTGACATTGTTCG
AAGCCATGTTGAGTGGTTTCGATTTTGATATACTCAGTCTTGCCGACACC
TGCAACCGGCCGACGTGGGCCTACGGCGCGAGTGTGTGGCTACTGATAGC
CTACGAGATCATTATGGCTATACTTTTGCTCAACCTCTTGATCGCCGTCC
TGAGCACGGTCCATGCTAAAGTCGATGCAAAGGCCGAAGAGGAATACCAT
CTCGTCCATGCTAAAGTCGATGCAAAGGCCGAAGAGGAATACCATCTC
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