mRNA_F-serratus_M_contig84.19787.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig84.19787.1 vs. uniprot
Match: D8LCW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW4_ECTSI) HSP 1 Score: 497 bits (1279), Expect = 2.650e-149 Identity = 516/1385 (37.26%), Postives = 653/1385 (47.15%), Query Frame = 1
Query: 427 EKESLRVMKHQLAAVHQLRVDLQRKDSVIQASATKSLQLKVQEGHTVKDRAERFETHCRLLGERCLYLESSNAEYTERFGALDRESRVKTDGLLRDVDDLGRRLRDVEVELKAEKRRFETGVAAHERELAVAVADGADARGLVEDLKTSLKEATAQAKRRKERFSEMEELLTSQLDETRKRMARAERRASAAAEARRLDSVAATEAAASLERHLKKALLRKRGEAGTGRQGGDDDGGQEVCDSTEAFVDLSGRWCGNEVLALTWVAVSKALEELDGARAGEAAVVWSLREARRQVSERQEEVGAXXXXXXXXXXXXXXLHQAEERLKSTCADVEAARESVRKRDRLADAVWTQLSLLGFVSSRSRXXXXXXSPPRTLL-----GSPLGRNEGSCLSNTRAAGTSGEHMVGDLSFDSKEAEIMGGLKWLAAEWTERGKAVQALSERTRNERTRWEENKARLETLAKAAKEEAGSKGAELARLALEFQHRVASLEAQVSEKAVEAKDAAANEAVRRLARXXXXXXXXXXXXXXXXREEADRRVSEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGARRKEAAACLEANRRVSAAEEALAKAESTARTAKAEATVAWEGRRAVEAALRVLGRFVGPLRRLCLELREQKRFLARSYRLHAPLQVELFTVAAAVSGKDYWCLWRACCHSSDGRCYGQSGRRWVACSAACSSSNIVNFSRDGRTQQAEVSAPLPDL-----PPSFRAVVIAVIATNRLARIARGGGFP---------GGVADGAGGGGRRGV--------RRAETEEASGTASDARYVSSAAGARALPVLPPWCAAQD---LEMPRADELEAMPDARALEVVLERLLVFDAEGEGVAAGSARSLRGSAPWTRRCGVLKAK-------ASWGGCTGVE---GGGG---GDLLRHLLRGRKDHMMRVKERGLVVADPRSLSGRSREGCVSPPRRPCRVRLGRRVREEMERSLWLGEGPGQPASLHLRDIRKALAALARELNASEGKRLEFEGALRAAGGGIGIRELEKSAVALRRRVGLLEAEACGRP--DKAGVFALAKEKERASAEAAALKVQVGALEEAVMTAKRALQQASKESQEVRLERDAAEERARKREARGRELLGEVDQLKEFARRASLERDECLERERAAARDR-----------GGGVNSSNSSNN---AIRAGRDQGGGVEVMDYPSGSSVGPRYLVAKASPRDKRDKQGAKQRNITINTSTVCLYTLRFYMAQEQQXXXE------QDLTVHAEGLLRCSRKEEERLRSRRGCSQLEARVAESRSFLEKQTSALDSLRGEAARARQEAEXXXXXXXSATEQSSQRESEHRRQLSVLEARLLEAGVKSTRRRDLLQLQA 4386
EKESL VM+ QLAAVHQLR+DLQRKDSVIQ SLQLKVQEG + +DR R E HC LL +RC LES+N EY ER GALD+ESR + D L R+ DDL ELA A+A+GADARGL LK SL+EA+AQA RR+ R++EME+L STEAFV+LSGRWCGNE+LALTWV VSK LE L+ A+AG + LR+A+ QV +QEE + E RL+ST A ++AARE R++ DAVW+QLS +G VS + L G P G + GS ++ +G G L D++ +EI G++ L +EW++RGK ++ L+ R R E R +E +A ARLA++F+ R A EA + EK + + A +A R++ EEA XXXXXXXXXXXXXXXXXXXXXXXXXXXX AR A EA+RRVS AEEALA A ++ A A + A E + + EAAL++LGRFVGPL RLCLELREQKRFL+RSYR APLQ ELF+VAAAV+GKDYWCL A + RR S N DG + D+ PPS RAVVIAV+A NRLA AR GG A GA GG ++ + +G +DARY++ A G R+LPVLPPWC L +P A +LE M D +ALE VL RLLVF EG G + G RR ++A+ GG +E GGGG GDLL HL+RGRKDHM VK LE+SA LRRRV LEAEA +P D AL +E + A+A A L+ QVG LEEA+ A+R + +AS S+ RD AE R + +LERDECLERERA AR R GGG + + A+ +G ++ P GS G A A A+++ +++ V + R + A EQQ + + V ++ LRC RKEEER R+R CSQLE R+AE+R LE+Q S S+R AARA +AE S++E + RRQ+S+LEARLLE G +++RRRDLLQLQA
Sbjct: 2 EKESLDVMRQQLAAVHQLRIDLQRKDSVIQ-----SLQLKVQEGESARDREGRLEAHCHLLEKRCSCLESTNGEYAERLGALDQESRSRVDSLRREKDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXELAAALAEGADARGLAGGLKESLEEASAQANRRQGRWAEMEKL-----------------------------------------------------------------------GSTEAFVELSGRWCGNELLALTWVEVSKTLEALEAAQAGHRTALGRLRDAKLQVGTQQEETSGANQVADDLRQELSRMRDVEVRLQSTAAQLKAAREKERRQRVHVDAVWSQLSSIGAVSPGGLEDSNIDDKDNSELFPGRIGCPAGES-GSGVAVVEGGSIAG----GGLDDDARLSEIPRGIRRLVSEWSDRGKGLETLTRRLREEGARRDEERAEXXXXXXXXXXXXXXXXXXXARLAVDFETRAACAEAGMDEKVAKVQADAVADANLRVSTVS---------------EEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVALARGGAAEKEEEADRRVSEAEEALAAARASETAAVALSRSAVERQLSAEAALKILGRFVGPLHRLCLELREQKRFLSRSYRRDAPLQAELFSVAAAVTGKDYWCLLSAATDIDIASPNNATTRR----RERNPSGNGRRLPYDGACVGEDCQDDGDDVVAVRVPPSLRAVVIAVVAANRLAAFARASSAARRTYHDDSVGGPATGATAGGAXXXXXXXXXXQQQRPRQCRTGGETDARYLARAGGIRSLPVLPPWCCGNRGRVLRLPAASDLEEMADGQALETVLARLLVFGTGAEGDDGGEXXXVGGG----RRGRNVRAEPMDGNVSGGGGGVLNIEALWGGGGARVGDLLYHLIRGRKDHMTGVK-------------------------------------------------------------------------------------------------LEESADVLRRRVESLEAEASAKPAVDLEAFAALGEEMKAATAVGARLREQVGRLEEALSAARREVAEASAASERATAGRDEAEARIVRXXXXXXXXXXXXXXXXXXXXXXNLERDECLERERAVARQRVDQTLNETAVIGGGTTDQDLLHTPPPAVATPTTRGRRLDARGPPLGSGGGREGAPASARDGSVSPPLSARRQRRSLDEDHVEQWDHRAH-ADEQQRQHQXXXXXMRQRLVQSQEELRCCRKEEERSRAR--CSQLETRLAEARDCLEEQKSVTASMRRAAARAHDDAEAARKQVEDTKALVSRQEFQCRRQVSLLEARLLETGARNSRRRDLLQLQA 1182
BLAST of mRNA_F-serratus_M_contig84.19787.1 vs. uniprot
Match: A0A6H5KDU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU5_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.510e-53 Identity = 214/526 (40.68%), Postives = 274/526 (52.09%), Query Frame = 1
Query: 1150 DSTEAFVDLSGRWCGNEVLALTWVAVSKALEELDGARAGEAAVVWSLREARRQVSERQEEVGAXXXXXXXXXXXXXXLHQAEERLKSTCADVEAARESVRKRDRLADAVWTQLSLLGFVSSRSRXXXXXXSPPRTLLGSPLGRNEGSCLSNTRAAGTS----GEHMVGDLSFDSKEAEIMGGLKWLAAEWTERGKAVQALSERTRNERTRWEENKARLETLAKAAKEEAGSKGAELARLALEFQHRVASLEAQVSEKAVEAKDAAANEAVRRLARXXXXXXXXXXXXXXXXREEADRRVSEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGARRKEAAACLEANRRVSAAEEALAKAESTARTAKAEATVAWEGRRAVEAALRVLGRFVGPLRRLCLELREQKRFLARSYRLHAPLQVELFTVAAAVSGKDYWCLWRAC-------CHSSDGRCYGQ------SGRRWVACSAACSSSNIVNFSRDGRTQQAEVSAPLPDLPPSFRAVVIAVIATNRLARIAR 2676
DSTEAFV+LSGRWCGNE+LALTWV VSKALE L+ A+AG + LR+++RQV+ +QEE + AAR+ R++ DAVW+QLS +G VS L R +G CL +G + G G L + + +EI G++ L +EW +RGK ++ L+ R R E R +E + LET A A ++ E+ARLA++F+ R A EA + EK + + A +A R++ EEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX NRR ALA A + A A + A E + + EAAL++LGRFVGPL RLCLELREQKRFL+RSYR APLQ ELF+VAAAV+GKDYWCL A +D + +GRR + AC + D P +PPS RAVVIAV+A NRLA A+
Sbjct: 94 DSTEAFVELSGRWCGNELLALTWVEVSKALEALEAAQAGHRIALGRLRDSKRQVATQQEETSSANQVVDDLRQELSRXXXXXXXXXXXXXXXXAARDRERRQRAHVDAVWSQLSSIGAVSPGGLEDSNIDDKDNNEL---FPRRKG-CLVGESGSGVAVVEGGSIAGGGLDDEGRLSEIPRGIRRLVSEWADRGKGLETLTGRLREEGARRDEERRELETAAXXXXXXAEARREEVARLAVDFETRAACAEAGMDEKVAKVQADAVADANLRVSNVS---------------EEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRR------ALAAARDSETAAVALSRSAVERQLSAEAALKILGRFVGPLHRLCLELREQKRFLSRSYRRDAPLQAELFSVAAAVTGKDYWCLLSATTDIDIDIASPNDATTRRREKKPSGNGRRLLY-DGACVGDDCHGDDDD---------VPAVRVPPSLRAVVIAVVAANRLAAFAQ 584
BLAST of mRNA_F-serratus_M_contig84.19787.1 vs. uniprot
Match: A0A6H5KJW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW4_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.380e-16 Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 4063 VHAEGLLRCSRKEEERLRSRRGCSQLEARVAESRSFLEKQTSALDSLRGEAARARQEAEXXXXXXXSATEQSSQRESEHRRQLSVLEARLLEAGVKSTRRRDLLQLQA 4386
V ++ LRC RKEEER R+R CSQLE R+AE+R LE+Q S S+R AARA ++AE S++E E RRQ+S+LEARLLEAGV+++RRRDLLQLQA
Sbjct: 13 VQSQQELRCCRKEEERSRAR--CSQLETRLAEARDCLEEQKSVTSSMRRAAARAHEDAEAARKQVEDTKALMSRQEFECRRQVSLLEARLLEAGVRNSRRRDLLQLQA 118
BLAST of mRNA_F-serratus_M_contig84.19787.1 vs. uniprot
Match: A0A835YWW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW9_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 6.620e-8 Identity = 109/388 (28.09%), Postives = 131/388 (33.76%), Query Frame = 1
Query: 2296 VLGRFVGPLRRLCLELREQKRFLARSYR---------------------------LHAPLQVELFTVAAAVSGKDYWCLWRACCHSSDGRCYGQSGRRWVACSAACSSSNIVNFSRDGRTQQAEVSAPLPDLPPSFRAVVIAVIATNRLARIARGGGFPGGVADGAGGGGRRGVRRAETEEASGTASDARYVSSAAGARALPVLPPWCAAQDLEMPRADELEAMPDARALEVVLERLLVFDAEGEGVAAGSARSLRGSAPWTRRCGVLKAKASWGGCTGVEGGGGGDLLRHLLRGRKDHMMRVKERGL---VVADPRSLSGRSREGCVSPPRRP-CRVRLGRRVREEMERSLWLGEGPGQPASLHLRDIRKALAALARELNASEGKRL 3366
++ RF+ PLR LC ELR QK FLAR YR L + + LF +AA + GK C G G W A S G AP P L PS RAV IAV+A NRL + G LP A +P A L +P RAL+ VL L CG G LL L GR+ H +R++ERGL +V D CRVRL R VR ERSLW G G +P L L +R+ALAALAR LNA+E + L
Sbjct: 685 LMARFLAPLRALCAELRAQKAFLARHYRXXXXXXXXXXXXXXXXXXXXXXXXXXXLASDARKALFELAATIKGKG---------------CNGLRGG-WHA----------PGLSPLGM-------APEP-LLPSLRAVAIAVLAANRLRALGAARAANGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAAALAAAPLLPSAHALAVLPPLRALDAVLSGL---------------------------CGXXXXXXXXXXDLGAAAA----LLAGLAAGRRAHALRLRERGLADAIVTDAXXXXXXXXXXXXXXXXXXACRVRLSRAVRAAYERSLWSGGGACEPPLLSLAHVRRALAALARGLNAAESRAL 1007 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig84.19787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig84.19787.1 >prot_F-serratus_M_contig84.19787.1 ID=prot_F-serratus_M_contig84.19787.1|Name=mRNA_F-serratus_M_contig84.19787.1|organism=Fucus serratus male|type=polypeptide|length=1462bp MADIQISLRRLQESIRGLSDASALVAPTPSVVTSEANSDGGESAVLFETSback to top mRNA from alignment at F-serratus_M_contig84:527453..569702+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig84.19787.1 ID=mRNA_F-serratus_M_contig84.19787.1|Name=mRNA_F-serratus_M_contig84.19787.1|organism=Fucus serratus male|type=mRNA|length=42250bp|location=Sequence derived from alignment at F-serratus_M_contig84:527453..569702+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig84:527453..569702+ >mRNA_F-serratus_M_contig84.19787.1 ID=mRNA_F-serratus_M_contig84.19787.1|Name=mRNA_F-serratus_M_contig84.19787.1|organism=Fucus serratus male|type=CDS|length=8772bp|location=Sequence derived from alignment at F-serratus_M_contig84:527453..569702+ (Fucus serratus male)back to top |