mRNA_F-serratus_M_contig84.19789.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig84.19789.1
Unique NamemRNA_F-serratus_M_contig84.19789.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig84.19789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig84contigF-serratus_M_contig84:744544..746166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1322
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig84.19789.1prot_F-serratus_M_contig84.19789.1Fucus serratus malepolypeptideF-serratus_M_contig84 745340..746110 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932477.8101356-UTR-F-serratus_M_contig84:744543..7450341622932477.8101356-UTR-F-serratus_M_contig84:744543..745034Fucus serratus maleUTRF-serratus_M_contig84 744544..745034 -
1690964328.1523905-UTR-F-serratus_M_contig84:744543..7450341690964328.1523905-UTR-F-serratus_M_contig84:744543..745034Fucus serratus maleUTRF-serratus_M_contig84 744544..745034 -
1622932477.8324733-UTR-F-serratus_M_contig84:745335..7453391622932477.8324733-UTR-F-serratus_M_contig84:745335..745339Fucus serratus maleUTRF-serratus_M_contig84 745336..745339 -
1690964328.166789-UTR-F-serratus_M_contig84:745335..7453391690964328.166789-UTR-F-serratus_M_contig84:745335..745339Fucus serratus maleUTRF-serratus_M_contig84 745336..745339 -
1622932477.900747-UTR-F-serratus_M_contig84:746110..7461661622932477.900747-UTR-F-serratus_M_contig84:746110..746166Fucus serratus maleUTRF-serratus_M_contig84 746111..746166 -
1690964328.1855004-UTR-F-serratus_M_contig84:746110..7461661690964328.1855004-UTR-F-serratus_M_contig84:746110..746166Fucus serratus maleUTRF-serratus_M_contig84 746111..746166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932477.8845706-CDS-F-serratus_M_contig84:745339..7461101622932477.8845706-CDS-F-serratus_M_contig84:745339..746110Fucus serratus maleCDSF-serratus_M_contig84 745340..746110 -
1690964328.1773534-CDS-F-serratus_M_contig84:745339..7461101690964328.1773534-CDS-F-serratus_M_contig84:745339..746110Fucus serratus maleCDSF-serratus_M_contig84 745340..746110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig84.19789.1

>prot_F-serratus_M_contig84.19789.1 ID=prot_F-serratus_M_contig84.19789.1|Name=mRNA_F-serratus_M_contig84.19789.1|organism=Fucus serratus male|type=polypeptide|length=257bp
MIDVKNRKDRADSCCKRSSFGVAGSKTAEYCAQHALKRMVGAKNREYRTE
GCGKWPSLGVAGTKRVDYCSHHAKGVVDVKNRKYRTEGCGETPSFEVAGR
KSPEYGSPFAPEGVVDACSRKCRAEGCGKKLSFEVDSARMAQYSGQHARL
KYCVGGYREREVGQHHSGKEAVGSAIPSDDGKHTTVRPPPTQASPPSDGS
RGSRKRVRHPEITSTASKRAAARKSTGGAVNTPDIDGRQTLVKRDSSMKA
EVQLSL*
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mRNA from alignment at F-serratus_M_contig84:744544..746166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig84.19789.1 ID=mRNA_F-serratus_M_contig84.19789.1|Name=mRNA_F-serratus_M_contig84.19789.1|organism=Fucus serratus male|type=mRNA|length=1623bp|location=Sequence derived from alignment at F-serratus_M_contig84:744544..746166- (Fucus serratus male)
TTGGAGTGCCAGGTTCGAAAACGCCGGAGTACTGCGTACAGCACGCCCCG
GAAGGTATGATCGACGTCAAGAACAGGAAGGACAGAGCCGACAGCTGCTG
CAAGAGGTCATCCTTCGGAGTGGCAGGTTCCAAAACGGCGGAGTACTGTG
CACAGCACGCCCTGAAACGGATGGTTGGCGCCAAGAACAGGGAGTACAGA
ACCGAAGGTTGCGGCAAATGGCCGTCGTTGGGAGTGGCAGGTACGAAAAG
GGTGGATTACTGCTCACACCACGCGAAAGGCGTGGTCGACGTCAAGAACA
GAAAGTACAGAACTGAAGGCTGCGGAGAGACTCCGTCGTTTGAAGTTGCA
GGAAGGAAATCGCCGGAGTACGGTTCACCTTTCGCCCCGGAAGGGGTGGT
CGACGCCTGCAGCAGAAAGTGCAGAGCCGAAGGTTGCGGCAAGAAGCTAT
CGTTCGAAGTGGACAGCGCAAGAATGGCGCAGTACAGTGGTCAGCATGCC
AGATTAAAATACTGTGTCGGCGGGTACAGGGAGAGAGAGGTTGGCCAACA
CCACTCCGGGAAGGAAGCAGTTGGTAGCGCAATTCCGAGTGACGACGGTA
AACATACCACTGTCCGTCCTCCTCCCACCCAGGCAAGCCCTCCATCAGAT
GGTAGCCGGGGCTCTCGTAAACGAGTACGGCACCCAGAAATCACGTCTAC
GGCTTCGAAGCGGGCTGCCGCACGAAAGTCGACTGGAGGAGCGGTGAATA
CGCCGGATATCGACGGGCGACAAACTCTCGTCAAACGAGATTCTTCTATG
AAGGCGGAAGTGCAGCTCTCCTTGTAACCAGGTACACTACATGTGACCGC
AAGCTCGATCTGCTTAAATATAAGGTTTCATACGGCAGCACTACGATACC
GCCCACCGGAGCTCATTGTTGGTTTTACCTTCGTTCGGGTTGAATGAACA
CCCCGTCTTGTTTGTAAATTCTTGCCTCTGTGTTTTGTCGCAAGGTTGTG
AGTTCAGCTCAAGGGCCTATTTTCTTCTTAGACCCTCAACATCTCGCAGC
TTCAGTCATTCCTTCACGTAACACGCCACTCGTGCATACCCTCACGACCG
TGTTCTATCGTTCTCCCATCTTTCGACCTCAGGTGCTGTGGTCAAGATCG
CGGTCATTATATTTATACTGTAGCTTCCGAGCCGCTGATGGGTCTGGTGA
GGGGTCCTACCGTGAGGATTTCCTGAACAGGTTTATCCATTTACACTTGT
TTCTTTCCATGCCAGGCATGCACGCATTACTGTTCCATCCTTGATCGGCC
GGTACTGTACTAGAAGTATTGATGTAGTGACAAAGAAGTACGGTAGATGG
CACCGGACCTGAGGACGGTGCTATGGAGGATGATCTCTTAAAGTCTCTGG
CCACGCCGATTCCGATTTCGATGGGGGCGAGCGTTTGTGTTTTGTGCAGT
GGTCGTCGCGAAGCGTACTCGTCTGGCAAATTCATGAGCAGGTGAATGTA
CTGTCTGAAGTTCAGTCATGAATTAGGCTCAAATTGTATGGGTAGGGATA
ATGAACTCATTTCGCGCTGGGGTCAAAAGTTGACTAGACGAAGCCCCAGT
AAGGGGGGACTGGTGAACTGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig84:744544..746166-

>mRNA_F-serratus_M_contig84.19789.1 ID=mRNA_F-serratus_M_contig84.19789.1|Name=mRNA_F-serratus_M_contig84.19789.1|organism=Fucus serratus male|type=CDS|length=1542bp|location=Sequence derived from alignment at F-serratus_M_contig84:744544..746166- (Fucus serratus male)
ATGATCGACGTCAAGAACAGGAAGGACAGAGCCGACAGCTGCTGCAAGAG
GTCATCCTTCGGAGTGGCAGGTTCCAAAACGGCGGAGTACTGTGCACAGC
ACGCCCTGAAACGGATGGTTGGCGCCAAGAACAGGGAGTACAGAACCGAA
GGTTGCGGCAAATGGCCGTCGTTGGGAGTGGCAGGTACGAAAAGGGTGGA
TTACTGCTCACACCACGCGAAAGGCGTGGTCGACGTCAAGAACAGAAAGT
ACAGAACTGAAGGCTGCGGAGAGACTCCGTCGTTTGAAGTTGCAGGAAGG
AAATCGCCGGAGTACGGTTCACCTTTCGCCCCGGAAGGGGTGGTCGACGC
CTGCAGCAGAAAGTGCAGAGCCGAAGGTTGCGGCAAGAAGCTATCGTTCG
AAGTGGACAGCGCAAGAATGGCGCAGTACAGTGGTCAGCATGCCAGATTA
AAATACTGTGTCGGCGGGTACAGGGAGAGAGAGGTTGGCCAACACCACTC
CGGGAAGGAAGCAGTTGGTAGCGCAATTCCGAGTGACGACGGTAAACATA
CCACTGTCCGTCCTCCTCCCACCCAGGCAAGCCCTCCATCAGATGGTAGC
CGGGGCTCTCGTAAACGAGTACGGCACCCAGAAATCACGTCTACGGCTTC
GAAGCGGGCTGCCGCACGAAAGTCGACTGGAGGAGCGGTGAATACGCCGG
ATATCGACGGGCGACAAACTCTCGTCAAACGAGATTCTTCTATGAAGGCG
GAAGTGCAGCTCTCCTTGTAAATGATCGACGTCAAGAACAGGAAGGACAG
AGCCGACAGCTGCTGCAAGAGGTCATCCTTCGGAGTGGCAGGTTCCAAAA
CGGCGGAGTACTGTGCACAGCACGCCCTGAAACGGATGGTTGGCGCCAAG
AACAGGGAGTACAGAACCGAAGGTTGCGGCAAATGGCCGTCGTTGGGAGT
GGCAGGTACGAAAAGGGTGGATTACTGCTCACACCACGCGAAAGGCGTGG
TCGACGTCAAGAACAGAAAGTACAGAACTGAAGGCTGCGGAGAGACTCCG
TCGTTTGAAGTTGCAGGAAGGAAATCGCCGGAGTACGGTTCACCTTTCGC
CCCGGAAGGGGTGGTCGACGCCTGCAGCAGAAAGTGCAGAGCCGAAGGTT
GCGGCAAGAAGCTATCGTTCGAAGTGGACAGCGCAAGAATGGCGCAGTAC
AGTGGTCAGCATGCCAGATTAAAATACTGTGTCGGCGGGTACAGGGAGAG
AGAGGTTGGCCAACACCACTCCGGGAAGGAAGCAGTTGGTAGCGCAATTC
CGAGTGACGACGGTAAACATACCACTGTCCGTCCTCCTCCCACCCAGGCA
AGCCCTCCATCAGATGGTAGCCGGGGCTCTCGTAAACGAGTACGGCACCC
AGAAATCACGTCTACGGCTTCGAAGCGGGCTGCCGCACGAAAGTCGACTG
GAGGAGCGGTGAATACGCCGGATATCGACGGGCGACAAACTCTCGTCAAA
CGAGATTCTTCTATGAAGGCGGAAGTGCAGCTCTCCTTGTAA
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