mRNA_F-serratus_M_contig8377.19755.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8377.19755.1
Unique NamemRNA_F-serratus_M_contig8377.19755.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8377.19755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8377contigF-serratus_M_contig8377:693..7213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8377.19755.1prot_F-serratus_M_contig8377.19755.1Fucus serratus malepolypeptideF-serratus_M_contig8377 847..7213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932474.9591286-UTR-F-serratus_M_contig8377:692..8461622932474.9591286-UTR-F-serratus_M_contig8377:692..846Fucus serratus maleUTRF-serratus_M_contig8377 693..846 +
1690964326.7327404-UTR-F-serratus_M_contig8377:692..8461690964326.7327404-UTR-F-serratus_M_contig8377:692..846Fucus serratus maleUTRF-serratus_M_contig8377 693..846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932474.9725301-CDS-F-serratus_M_contig8377:846..9921622932474.9725301-CDS-F-serratus_M_contig8377:846..992Fucus serratus maleCDSF-serratus_M_contig8377 847..992 +
1690964326.7444673-CDS-F-serratus_M_contig8377:846..9921690964326.7444673-CDS-F-serratus_M_contig8377:846..992Fucus serratus maleCDSF-serratus_M_contig8377 847..992 +
1622932474.9898007-CDS-F-serratus_M_contig8377:7134..72131622932474.9898007-CDS-F-serratus_M_contig8377:7134..7213Fucus serratus maleCDSF-serratus_M_contig8377 7135..7213 +
1690964326.7537825-CDS-F-serratus_M_contig8377:7134..72131690964326.7537825-CDS-F-serratus_M_contig8377:7134..7213Fucus serratus maleCDSF-serratus_M_contig8377 7135..7213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8377.19755.1

>prot_F-serratus_M_contig8377.19755.1 ID=prot_F-serratus_M_contig8377.19755.1|Name=mRNA_F-serratus_M_contig8377.19755.1|organism=Fucus serratus male|type=polypeptide|length=75bp
MKVWQGAPSCAVHTNAQHLAMVTTENYLHGPNQKWALDFSQTKHIAFDLN
ETRGVKRISSYTLQTEQVGVHTTLK
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mRNA from alignment at F-serratus_M_contig8377:693..7213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8377.19755.1 ID=mRNA_F-serratus_M_contig8377.19755.1|Name=mRNA_F-serratus_M_contig8377.19755.1|organism=Fucus serratus male|type=mRNA|length=6521bp|location=Sequence derived from alignment at F-serratus_M_contig8377:693..7213+ (Fucus serratus male)
AGCAAATGCGCCGCAACCTACGTCCAATCATCTAAGACCGACAATATATG
TTACGTTTCAAGTAACACGCCTGTCAACACTATTACACTAGCCCACCCTG
GGAAGCCTGGGATAAGCGCAAGCAGTGCGAAAGACCGGCTGACCAAAACG
TCCAATGAAAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATG
CTCAACACCTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAAC
CAGAAGTGGGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTT
GCAAACAGCGGCGAAAGTTCAAACAACGGATTTTTGCGCGAATCAAGAGC
AGTGACGTACTATTGTAACTACTGCATAAAACCACGACTGCACGATAACA
GTACCGAAACGACCTCCCCGTTACTATTCTATAGCCAAGATGAGATCCTC
GCAGACCCACACAGAGTACTTCCTATGGTCCCAGCGCCGGATTCATCAGT
ATCATAGTACAGTACCAAACACTCTTCCGTTATCTGTTATGCCCAATCAA
ATGAAATCCTCGCAGACCCAAAACGAACAAAACACTTCCTACGGTCCCAG
CGTTGGATTCATCATTACAAATATCGGCCCACCGGTACTATCTTGACCAA
TTTCTCCGAAGATGGACGGTCTTCTGTCAGCGTGCCGTCCGTCAGCGTCT
TCCACGCTGAACTGGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTCGA
AGTCTACCTGTCAAAACAAATTATACTGTATGGGAAATTCTCGAATCCAG
AAAACAAAACCACGCGCAAGACATTTTGCAATAATGACACTGTCGTCCAA
TCAGAACTGTCGTTCGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCTG
TAACTCGATCACACACCTTCATCATGACACCCTTTTCAAAAGGAAAGTCA
GAAGGAGATGAAATGCCGATGGGTGCTTGCTCTCGTGAGCATACTCCTTT
TAAAAACGTGGCTACCCGCGGTATCAACTTGTCACCGAGTAGTCCGTGGG
CGCTAACACGTAGCCCACCCAAGCCTAAACCTCGGGCTTGCAGCGTCAGT
TATCATCCAGTAAGCTGTACGCTGGTGATGTCTTTCGTGGCCATAAACCA
CTAGTCCCAGAAAAAGGGAACCAACCCATAGTCTAGCTGGGGTCAAGAAT
TTTCAGCTCCGCACGTTGTCGCTTACAAACGGAGAATGGTCTGTACATTC
AGACAGGACCAAAATCAAGTGTTATTGTAGAGACTAGATAGCCCTCACAA
TAATGTACGTAGTTTCGTTTTTGGTTGGTTGCCACAATCTTCGTTTCATA
GTAGATTAACTTGACTGGCTTCCAATACCTATTTCTGGAAATTTCGTGTC
GTGTCCATTTTTGTGGTTACGGCAAAACGCTACGCCCTTTTAATGACTTC
TCGATCAGATGTCCTCCTCGAGATGTTCGGCTAACATTCGTCTGGTGATA
TTGTAGCTCTGACGCTAACCAACGATCAATAAGCCCGTAGACGATTTCGC
TTAGTTCTTTACCGTTGTCAGTTGCTGGAGTGGATCACTATTATCTTGTT
GTTGTTGTTGTTGTTTTCTTGTCTCAATCAACACTCTGATTAATCACGCA
TATTTTCAGATGCGTTGCTCAAGCGTTTGCTGGTAGTATTTTCGCCCTAG
GTTAGAATTGTTCTTGTGTACAGCAATAATGCGAGAATTCATCTCGGCAT
CTACCGTAAAATGATCTCCCCCTCTGGACTACGAACAAAGGGCATCGCTC
AACGTCCTCGTTCCTATCACGTTCGATTACCTATGGCTTTTGTCAGCTTC
GACGCCCGGCACGCCCGTGATATTCATTTTCTGCCATTACGGCAACTTAC
GGCTCCAATACTGTGTTGACCGTATTGAATGGTTTCTCTGTGGTCACATT
TGCAACCAACTGGAATGGTTTTTTCTGTGGTCACATTCAGTGTAGTAAAT
CGTCAGGCGGATTTTACCCACGTTTTTGCAACCAAGCTCCTCCTGGCTAT
ATTTGTTCGTACGGTCGCAACAACGTGGACCATTAAACAGGATATATTTT
TCAGAATCGAGACCGTAGCCTTTTTCAGCTTCGTCCTTCTTACTTTTTAC
CCTTGTATTGGCTACTTCTGGCCAACACTATTCTTCTTCCCCAATTCGGG
GTTGAGACATTACGATAGAGTCTTTCCAAGACTGTTGTATGTTGTCTCTG
TCATGGATACTAGCATCCACGGCAGCCCTAATGTGTCAGTTTTTTTTTTG
TTTCAACACCGGTGTTTCATTATGGGGCGCCTTTCTTTCTCCTATCTCCC
TCAAGGTTGCCTGATGCATTGCTTGAGTGAAGCGTTTAAATCGTCTGGCA
CTTTATTGCCAGAAGAGCGCTCAAGGTTGTTTTTCGATTGATCGGATCAT
GCATACCTTGTCTATGCTCTGATGATGCGGCGATAATAGCGGTCCGCCTA
TCTTTCTGCCTTTCAGCTATCCGCGATCCTCCCTCCCAACTTAGAGGGTG
GTCAATCCTACGTAAGCTTGAAGTTCGAATGTTGGTATTAACTGTATCAT
CTTCTTTTGTAGGTACGGTCGCGACGGAGACTATTGCTCTCGCATACCAC
TCGTGGAGTCAGATTCTCACTCGTTTCATCTTGCCCCCGAGCCTGACCAC
GACCAGGAAGTTGATCTGAAAACAGACTTTGAAACTGGCTCCTTTGCCTG
ATTATTATTTTATTTTATTTCTTGCCAGGTCATCCCATTAAGCCAATGTG
CTGTCCTGCCAAAAAAAAGGATGTTTATTATTTAGGGATATGGATCAATG
TCCTCCTTACTTTTCACCCTTATGTTCTGTACTAGACTTGTTTCGGAATT
CAGTCTAGACCGATGTAACTTCAAGCGTGCCGTTAGTTCCTATAGACTGC
ACACTGAATTTTGCAGTACTTGTAGCTTGAGTAACGAGCGAACAGGGGAG
AGCCTATACTTCCGCTGAACTTATTCACTCGTATTAGTCGCTTGTTGTAC
TTTCGAGTCACGAATATTCTCCGTGTTTTTACTATGTCCTCGGCGCGGTT
CATTTCATCCTGTCCTCTGACATGTTCTTTTCTCGTCGGTTTATCACATT
ATTTCAAAAGTGTGCCGACATTGGAAAGGAGCAAATCTTTCGACGCATTG
ACTGCAGGCTAGTACAGTTTGTTTATCGCTATTCATTTGCATCGCTCTGT
TGTGTATCAGACATTATGTTTCCAGTTTCATCTCGTCTGAGCAACTTATC
ACTCGATTTTTTTTTTTTCAGTGACGTTGTGATGTCGTTTCGTTTTTTTT
CTCTTCCACACATATGGCAGCACCCAATGTATTCGTCATACGCTACGGGC
TCGATTCATATGTGCCCCCTAGGGAGTGGGGTATGGCTCGCGTCTTCGTT
ACGCGCTTTTGTCGTTTTGGTACCATCGGGAAGCTCCTCATTCCCTTACC
CCTCGAGGTTAACTCGTGCAGAGCTCGAGTGGGTCATTTAACACCTGAGT
CTGGATGCTCAGGCAAGCTCCCAAAATTTTGAGCTGATCAGGCCTTCCCA
ATTTGGTTTCGCTCCGGTTTCATCTTACCTTTTTTGAATATGGCTGGCGA
CATTGATCGGTCGTACTGCTGGTCGCGTGCCATACGCCTTCGATTGACGC
TCCGAAGTGTCTGCTTTGCCGACTGCGTTCGACGAGCGGTTTGTAATCAG
AAATAAGAGCACGTCTAATTTCTTTTTTTTTGTATCGCTATCTTTCCCAT
CCAAGGTTAATCTATTCAGAGCTTGGATTGAGCATTTCCGCGATGTTTCC
TGGTCTAGCCTTTGCATAGAGCGTCTCAAAATCTCATCATTTTGCGTTCG
CTCAGGTGATAGTTCGTCGTCATCACCTTCTTACAGCTACCAGTAGCTTG
CAATTCGTCGCATGCCACTGCTGTCTTTTCTGTAATGCGCATTGCGCCGG
TCTCCACTTTTTCTATACGTTGTATACGAGTCGGAGATGTAGTTTCGTCT
GTTAATAGACATTTCTGCGAACATTCTGTGAGAGATCAACCGCAGTCACA
CCTGCCCAGTTGTCATGTGTTATTGTTCGACTTGTAGTACCTTCGATTGC
TACTGGCGAGACAGAAGGTAACATCCCATCATCGGATTGTATGTTTGTTC
TAGATCACTAGAATTGGGAGTCTTCACAAAGTTCTTGGTTGTAACTGTTG
TCACTGCCACTTCCAACCTATCACTGCTTTGACGACTTGTAGCATTTTCA
GTGGAATTACTTTCGGCGTGTGCTCGGAGTTTATTTTTGACCTATTGGAG
TTGTTCCAACTGACTCTTTCTCAGGTTCGGCACGCAATTCTCCGATATTG
CTGTCCGTAAGACCGCTATTGTCTAGGAATGGCTTGGGGCATATTCGCAT
GTTGCTGAACGTAGCGGGCTTGGTTTTGGGGTCAGAACGTCGCGCTAGCA
ATGGCGGCTCGCCATCCTTTTGAATGTTATACCCAGTACCCCATGTCTCG
ATTAGAGCTGACCACGAAGGAAAATCTGCTTTGGAAATTTTCACGTTTAT
GACCGATTCGTGTCCCGACCCACACTTTATCTTTGTTTTAAAGAGGGTCG
CACGGACCAAATTCTGCAGTAGTACGTCCCCGACTGCCTGTTGCAGTCCT
TGGGAGAAGCTCTCCATGTGATCCCATAGGTCCTTCAGAATAGCTGCTTT
GATGTCCGCCAGCTCCGGGAAACTGTTCCTCCAGGAAAAGTCATTTTCCA
CAACCCAACCTAGCTCCGCGATGGCTCTCTGGGCTGTCAGATCCATTGGC
TCCTGGCACTGAGCTGACCCGAGCTCCCGCAGAGAGTGGAATTTCCATTC
GCTCAAAGTGTTGAATTTGTCGATGAATTTGGCTATTTTATCCCATGGCC
GGGGCGTCCACCTACGTCCCTGGGCGTAACGGCGCTCCGACTGGGAGCCC
ACCCAAGCTGATACCTCCGCTCTCGCCGCCTTAAGTGGCTGCCGCGGCCA
GTCCTGGTGAATCGTGGGCCCAATTTCTTGGTCCGATCTTGCTTTCTCCA
CTAAGCCCTCCTGAGCCTTTTTGGTCAGCGCTTCGTGAACTCTGGAGATG
CCTTCTTCAAGCACCCTGGTGGATTCCTCAGCCTCCGCGATGGTGTTCGG
ATGGACCAGGCGATAAGCCTGCCATAATTTCGTCCGGATTGTTTCGCGTA
GCCCAGTCCAGTACTCCAGGCCCAAGGTAAAATCCGGCGGAGGTCTCAAC
TCCGTAGAGCCTCGCGCTGTGGACGTTTGTCCCATCAAATTGTCTGAGCC
TCCCATTTGGCTCACTGACGTATCCGGGATCAAGGGCGTATGCCCTGTTG
CAGCCTTTGAGAGTTCCTCCCCATTGCCCTCTACGCTCAACGGCGTCTCG
AAGTCGCGGTGTTTTTTCCCGCTGCGCAGTTCTCGGAGGCCCTTCCTCGC
TGCCTATACTTGGAATCGAGGGCATTTGCCCTGTTGCAGTCTCTGAGGGT
TCCCCCTGCATTGCCCTCTACGCTCGATGGCGTCTGTGAAGTCGCGGATT
TTATCCCGCTGCGCAGTTCTCGGAGGCCCTTCCTCGCTGCCTATACTCAG
AATCAAGGACATCTGCCCTGTTGCAGTCTCTGAGGGTTCTCCCCCTGCAT
TGCCCTCTACGCTCAGCGGCGTCTGTGAAGTCGCGGATTTTATCCCGCTG
CGCAGGTCTTGAGGCCCTTCCTCACTGCCCATACTCAGAATCTAAGGACA
TCTGCCCTGTTCAGTTTCTTTCCTCTCCGACGTTCTCCGGGCTGCGCATG
CCATTACGGCCCTCGGTTTCCCAAGAATGAAGCGTCCTCGATCGAGACTC
GCTTTCTCGATGGTCCTCAAAGCGATTGAAGTGTCCTCTATCGAGACTCG
CTTTCCCTGATGATCCTCAAAGCGATTGAAGTGTCCTCGATCGAGACTCG
CTTTCCCTGATGATCCTCAAAGCGATTGAAGTGTCCCTCGATCGAGACTC
GCTTTCCTGATGACCCTCAAAGCGATTGAAGTGTCCCTCGATCGAGACTC
ACTTTCCCTGATGATCCTCAAAGCGACTGAAGTGTCCCTCTATCGAGACT
CGCTTTCTCGAAGATCCTCAAAGCGACTGAAGTGTCCCTCTATGGAGACT
CTGCTTTCTCCCGATGATCCTCAAAGCGACTGAAGTGTCCCTCGATCGAG
ACTCGCTTTAACGATGAGAACGGCCTGACCACCGTCCTACCGTCGACGCC
AAATTGTTATGGAGTTATCCAACTCCCTGTAGATTCTTTGACGGTGGTAT
GTGTCTCGCTCAGGAGACCAGGCGAAGGATGGATGTATAAAGGTATCTTC
GTTAACTTTCGTTCCTTGAAGTACCTACCGACTTACTCGTAGAAATGAAA
CACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGACTGAACAGGTG
GGGGTTCACACCACCCTAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8377:693..7213+

>mRNA_F-serratus_M_contig8377.19755.1 ID=mRNA_F-serratus_M_contig8377.19755.1|Name=mRNA_F-serratus_M_contig8377.19755.1|organism=Fucus serratus male|type=CDS|length=450bp|location=Sequence derived from alignment at F-serratus_M_contig8377:693..7213+ (Fucus serratus male)
ATGAAAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATGCTCA
ACACCTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGA
AGTGGGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTTATGA
AAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATGCTCAACAC
CTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTG
GGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTTAAATGAAA
CACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGACTGAACAGGTG
GGGGTTCACACCACCCTAAAAAAATGAAACACGAGGAGTCAAACGTATAT
CAAGTTACACGTTGCAGACTGAACAGGTGGGGGTTCACACCACCCTAAAA
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