mRNA_F-serratus_M_contig1261.1971.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1971.1
Unique NamemRNA_F-serratus_M_contig1261.1971.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.260e-23
Identity = 47/139 (33.81%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   22 WLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLRNN--RWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIV 432
            WL D+V+N++++L   RD ELC     RR S F  +FF  KL+    ++++  +K+WT ++ +    K+++P+N        HW + V  +++KR+ +YDS      +++E +L +LED+D+ K G+ ++FEP+DW  V
Sbjct:  388 WLNDEVVNMYMQLLSCRDKELCKANPSRRQSHFFTSFFLTKLKGMDCKYNYTGVKRWTRRVKVFEMDKIFVPVNVS----NAHWCMAVIFVQQKRINYYDSMGGGGKSVREDLLLWLEDEDEDKNGDNATFEPDDWTTV 522          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A0B6Z4U0_9EUPU (ULP_PROTEASE domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z4U0_9EUPU)

HSP 1 Score: 85.1 bits (209), Expect = 1.930e-16
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 1
Query:   22 WLGDDVINLWIELCRSRDGELCGKGTGRRHSCF-LNTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIV 432
            WL D+VIN ++ L   R GEL     G R   +  NTFF+ K++     H A+K+WT  +++     + IP++      G+HW LCVADM+KK V +YDS   +       +L Y+ D+   K  + ++F  N+W+ V
Sbjct:  509 WLNDEVINFYMNLLM-RSGEL-----GERAKLYAFNTFFYPKVKTG--GHSAVKRWTKNINIFAVHYIIIPVH-----LGVHWCLCVADMQKKLVTYYDSMGAKNNQCLYSVLQYIHDESIAK--SYTAFNRNEWKQV 631          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A433SYG7_ELYCH (ULP_PROTEASE domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SYG7_ELYCH)

HSP 1 Score: 83.2 bits (204), Expect = 8.920e-16
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 1
Query:   22 WLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLRNNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIV 432
            WL D+VIN ++ +   R     G+  G+      NTFF+ K+ +    H A+K+WT K+D+     + IP++      G+HW LCV DM+K+ + +YDS         + +L+Y+ D+   K+   +  + +DW +V
Sbjct:  449 WLNDEVINFYMNMLTER-----GEKEGQAKVYAFNTFFYPKIMSG--GHAAVKRWTKKVDIFSVHFILIPVH-----LGMHWCLCVVDMQKQVITYYDSMGAENNQCLQAVLNYINDESVAKK--QTPIKKSDWTLV 571          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: V7AZC1_PHAVU (ULP_PROTEASE domain-containing protein n=2 Tax=Phaseoleae TaxID=163735 RepID=V7AZC1_PHAVU)

HSP 1 Score: 73.6 bits (179), Expect = 1.890e-12
Identity = 42/132 (31.82%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   16 TGWLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLRN--NRWSHEALKKWTTKMDLAGAR----KVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEG 393
            TGWL D+VINL++ L + R+     K   + H  F NTFF+ KL +  N +  +++++WT++  L  +     K+++PI+ E+     HW L V + E K++ + DS K   +++ E++  Y  D+ + K G
Sbjct:  277 TGWLNDEVINLYLTLLKEREQRQSHKFL-KCH--FFNTFFYKKLISGPNGYDFKSVRRWTSQRKLGYSLLECDKIFVPIHQEI-----HWCLAVINNEDKKLQYLDSMKGEDSSVLEKLAKYFADEVNDKNG 400          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A0L9TC05_PHAAN (ULP_PROTEASE domain-containing protein n=6 Tax=Vigna TaxID=3913 RepID=A0A0L9TC05_PHAAN)

HSP 1 Score: 70.1 bits (170), Expect = 3.080e-11
Identity = 40/132 (30.30%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   16 TGWLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLRN--NRWSHEALKKWTTKMDLAGAR----KVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEG 393
            TGWL D+VINL++ L + R+     K   + H  F NTFF+ KL +  N +  +++++WT++  L  +     K+++PI+ E+     HW L V + + +++ + DS K    ++ E++  Y  D+ + K G
Sbjct:  276 TGWLNDEVINLYLALLKEREQRQSHKFL-KCH--FFNTFFYKKLISGPNGYDFKSVRRWTSQRKLGYSLLECDKIFVPIHQEI-----HWCLAVINNKDRKLQYLDSMKGEDRSVLEKLAKYFADEVNDKNG 399          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A2Z6LG92_TRISU (ULP_PROTEASE domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LG92_TRISU)

HSP 1 Score: 69.3 bits (168), Expect = 5.810e-11
Identity = 42/148 (28.38%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   16 TGWLGDDVINLWIELCRSRDGELCGKGTGRRHSC-FLNTFFFVKLRN--NRWSHEALKKWTTKMDLA----GARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIVQD 438
            +GWL D+VINL++EL + R+     +   +  +C F NTFF+ KL +  N + ++++++WTT+  L        K+++PI+ ++     HW L V + ++K++ + DS K     + + +  Y  D+   K G        + E V+D
Sbjct:  281 SGWLNDEVINLYLELLKERER----RDPQKYLNCHFFNTFFYKKLISGKNGYDYKSVRRWTTQKKLGYGLHECDKIFVPIHQQI-----HWCLAVINKKEKKLQYLDSLKGIDIQVLDMLARYFVDEVKDKTGEDIDISCWEKEFVED 419          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A2K3P705_TRIPR (Ubiquitin-like-specific protease ESD4-like protein n=3 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3P705_TRIPR)

HSP 1 Score: 69.3 bits (168), Expect = 5.820e-11
Identity = 43/148 (29.05%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   16 TGWLGDDVINLWIELCRSRDGELCGKGTGRRHSC-FLNTFFFVKLRN--NRWSHEALKKWTTKMDLA----GARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIVQD 438
            +GWL D+VINL++EL + R+     +   +  +C F NTFF+ KL +  N + ++++++WTT+  L        K+++PI+ ++     HW L V + ++K++ + DS K   T +   +  Y  D+   K G        + E V+D
Sbjct:  302 SGWLNDEVINLYLELLKERER----RDPQKYLNCHFFNTFFYKKLISGKNGYDYKSVRRWTTQKKLGYGLHECDKIFVPIHQQI-----HWCLAVINKKEKKLQYLDSLKGIDTQVLGVLARYFVDEVKDKTGEDIDISCWEKEFVED 440          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A151T5Z4_CAJCA (Sentrin-specific protease 2 n=3 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5Z4_CAJCA)

HSP 1 Score: 64.7 bits (156), Expect = 2.380e-9
Identity = 41/147 (27.89%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   16 TGWLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLRNN--RWSHEALKKWTTKMDLAGAR----KVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIVQD 438
            TGWL DDV+NL++ L + R+     K   + H  F NTFF+ KL +    + ++++++WT++  L  +     K+++PI+  +     HW L V +   K   + DS K    ++ +++  Y  D+ + K G        + E V+D
Sbjct:  290 TGWLNDDVVNLYMALLKEREQREPQKFL-KCH--FFNTFFYKKLISGIEGYDYKSVRRWTSQRKLGYSLLECDKIFVPIHQNI-----HWCLAVINKRDKTFQYLDSMKGEDISVLDKLAQYFVDEVNDKTGKDIDVTTWEKECVKD 428          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: UPI0010FB8019 (ubiquitin-like-specific protease ESD4 isoform X3 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI0010FB8019)

HSP 1 Score: 60.1 bits (144), Expect = 9.070e-8
Identity = 34/119 (28.57%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   16 TGWLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLRNN--RWSHEALKKWTTKMDLAGAR----KVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERI 354
            TGWL DDV+NL++ L + R+     K   + H  F NTFF+ KL +    + ++++++WT++  L  +     K+++PI+  +     HW L V +   K   + DS K    ++ +++
Sbjct:  284 TGWLNDDVVNLYMALLKEREQREPQKFL-KCH--FFNTFFYKKLISGIEGYDYKSVRRWTSQRKLGYSLLECDKIFVPIHQNI-----HWCLAVINKRDKTFQYLDSMKGEDISVLDKL 394          
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Match: A0A1J3I2J4_NOCCA (Ubiquitin-like-specific protease ESD4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I2J4_NOCCA)

HSP 1 Score: 50.1 bits (118), Expect = 2.600e-5
Identity = 27/91 (29.67%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  118 FLNTFFFVKLRNNR-WSHEALKKWTTKM----DLAGARKVYIPINHEVGGRGLHWSLCVADMEKKRVIHYDSFKNRTTTIQERILDYLEDD 375
            F N FF++KL +   +++EA+++WTT+     +L     +++PI+      G+HW+L V ++ K++    DS K     I + +  YL D+
Sbjct:    5 FFNPFFYIKLASRSGYNYEAVRRWTTQRKLGYNLIDCDIIFVPIHG-----GVHWTLAVINIRKRKFQFLDSLKGFDPRILKALAKYLVDE 90          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LMK6_ECTSI1.260e-2333.81ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A0B6Z4U0_9EUPU1.930e-1634.78ULP_PROTEASE domain-containing protein n=1 Tax=Ari... [more]
A0A433SYG7_ELYCH8.920e-1630.66ULP_PROTEASE domain-containing protein n=1 Tax=Ely... [more]
V7AZC1_PHAVU1.890e-1231.82ULP_PROTEASE domain-containing protein n=2 Tax=Pha... [more]
A0A0L9TC05_PHAAN3.080e-1130.30ULP_PROTEASE domain-containing protein n=6 Tax=Vig... [more]
A0A2Z6LG92_TRISU5.810e-1128.38ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
A0A2K3P705_TRIPR5.820e-1129.05Ubiquitin-like-specific protease ESD4-like protein... [more]
A0A151T5Z4_CAJCA2.380e-927.89Sentrin-specific protease 2 n=3 Tax=Cajanus cajan ... [more]
UPI0010FB80199.070e-828.57ubiquitin-like-specific protease ESD4 isoform X3 n... [more]
A0A1J3I2J4_NOCCA2.600e-529.67Ubiquitin-like-specific protease ESD4 (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:11395..12327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog2880.D8LMK6
KEGG koko:K08592
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons4
Model size443
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1971.1prot_F-serratus_M_contig1261.1971.1Fucus serratus malepolypeptideF-serratus_M_contig1261 11396..12327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.403199-CDS-F-serratus_M_contig1261:11395..115391622929196.403199-CDS-F-serratus_M_contig1261:11395..11539Fucus serratus maleCDSF-serratus_M_contig1261 11396..11539 -
1690962745.4316478-CDS-F-serratus_M_contig1261:11395..115391690962745.4316478-CDS-F-serratus_M_contig1261:11395..11539Fucus serratus maleCDSF-serratus_M_contig1261 11396..11539 -
1622929196.4213767-CDS-F-serratus_M_contig1261:11717..118201622929196.4213767-CDS-F-serratus_M_contig1261:11717..11820Fucus serratus maleCDSF-serratus_M_contig1261 11718..11820 -
1690962745.4495556-CDS-F-serratus_M_contig1261:11717..118201690962745.4495556-CDS-F-serratus_M_contig1261:11717..11820Fucus serratus maleCDSF-serratus_M_contig1261 11718..11820 -
1622929196.4328742-CDS-F-serratus_M_contig1261:11971..120871622929196.4328742-CDS-F-serratus_M_contig1261:11971..12087Fucus serratus maleCDSF-serratus_M_contig1261 11972..12087 -
1690962745.4621284-CDS-F-serratus_M_contig1261:11971..120871690962745.4621284-CDS-F-serratus_M_contig1261:11971..12087Fucus serratus maleCDSF-serratus_M_contig1261 11972..12087 -
1622929196.4481075-CDS-F-serratus_M_contig1261:12249..123271622929196.4481075-CDS-F-serratus_M_contig1261:12249..12327Fucus serratus maleCDSF-serratus_M_contig1261 12250..12327 -
1690962745.4795387-CDS-F-serratus_M_contig1261:12249..123271690962745.4795387-CDS-F-serratus_M_contig1261:12249..12327Fucus serratus maleCDSF-serratus_M_contig1261 12250..12327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1971.1

>prot_F-serratus_M_contig1261.1971.1 ID=prot_F-serratus_M_contig1261.1971.1|Name=mRNA_F-serratus_M_contig1261.1971.1|organism=Fucus serratus male|type=polypeptide|length=147bp
DPNHCTGWLGDDVINLWIELCRSRDGELCGKGTGRRHSCFLNTFFFVKLR
NNRWSHEALKKWTTKMDLAGARKVYIPINHEVGGRGLHWSLCVADMEKKR
VIHYDSFKNRTTTIQERILDYLEDDDDWKEGNMSSFEPNDWEIVQDS
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mRNA from alignment at F-serratus_M_contig1261:11395..12327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1971.1 ID=mRNA_F-serratus_M_contig1261.1971.1|Name=mRNA_F-serratus_M_contig1261.1971.1|organism=Fucus serratus male|type=mRNA|length=933bp|location=Sequence derived from alignment at F-serratus_M_contig1261:11395..12327- (Fucus serratus male)
GACCCCAATCATTGTACTGGGTGGTTGGGGGACGACGTCATTAACCTCTG GATCGAGCTATGCCGGAGTCGGGATGGGGTGGGTCGTCGTAAAAAACCGA AAAACTTGGGGGTATTCGTGTGTAGAAAACCTTCTAGCGTAGCATCGAGA TGGATAGTTTACGGAGGTCTGCACTTTTATGGAATAATCGTTTTTATTTT GTTTAATATGATACTTCGTCCCTTATAACATTTGTCGCAGGAACTATGCG GAAAGGGCACAGGGCGCAGACACTCATGCTTCCTGAATACATTCTTCTTC GTAAAGCTAAGAAATAACCGCTGGAGCCACGAAGCCCTCAAGAAATGGAC AACCAAGTAAAGAAGATGCTGGGGTCCAATATTGAACAATTGAAAGGGGT TCGGGGTTTTTCTGAGGTTGTGCCACAGAAGACGTGCAAGTGTGTTGTCT GCGAGGCAAGTGCTAAAACTATCACTTGCGACTATTTTGCGTCTCGTTCA TTTACAGGATGGATCTAGCTGGAGCCCGAAAAGTGTATATACCTATCAAC CATGAGGTGGGAGGCCGCGGTTTACACTGGAGCCTGTGTGTCGCCGATAT GGAGAAGAAGGTGACCATCCAGAGGGTGTGCGTGATGGTATAGGCATCAT TTATTTGTTGATAAAAAAAAACACGTCCAATTCGATGAAATGTGACATTG ATATCATGAGCACTTCATGTCTGCATCATAAACATGTACTCCACATGTTC GTCTAACTCGACTAACTCGGAAATGTTCCCATGATCAGCGCGTCATCCAC TACGACTCCTTCAAAAATCGGACAACGACGATTCAGGAGAGAATCCTCGA CTACCTCGAAGATGACGACGACTGGAAGGAGGGGAATATGAGTTCGTTCG AGCCGAACGATTGGGAAATCGTGCAAGATAGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:11395..12327-

>mRNA_F-serratus_M_contig1261.1971.1 ID=mRNA_F-serratus_M_contig1261.1971.1|Name=mRNA_F-serratus_M_contig1261.1971.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig1261:11395..12327- (Fucus serratus male)
GACCCCAATCATTGTACTGGGTGGTTGGGGGACGACGTCATTAACCTCTG
GATCGAGCTATGCCGGAGTCGGGATGGGGACCCCAATCATTGTACTGGGT
GGTTGGGGGACGACGTCATTAACCTCTGGATCGAGCTATGCCGGAGTCGG
GATGGGGAACTATGCGGAAAGGGCACAGGGCGCAGACACTCATGCTTCCT
GAATACATTCTTCTTCGTAAAGCTAAGAAATAACCGCTGGAGCCACGAAG
CCCTCAAGAAATGGACAACCAAGAACTATGCGGAAAGGGCACAGGGCGCA
GACACTCATGCTTCCTGAATACATTCTTCTTCGTAAAGCTAAGAAATAAC
CGCTGGAGCCACGAAGCCCTCAAGAAATGGACAACCAAGATGGATCTAGC
TGGAGCCCGAAAAGTGTATATACCTATCAACCATGAGGTGGGAGGCCGCG
GTTTACACTGGAGCCTGTGTGTCGCCGATATGGAGAAGAAGGATGGATCT
AGCTGGAGCCCGAAAAGTGTATATACCTATCAACCATGAGGTGGGAGGCC
GCGGTTTACACTGGAGCCTGTGTGTCGCCGATATGGAGAAGAAGCGCGTC
ATCCACTACGACTCCTTCAAAAATCGGACAACGACGATTCAGGAGAGAAT
CCTCGACTACCTCGAAGATGACGACGACTGGAAGGAGGGGAATATGAGTT
CGTTCGAGCCGAACGATTGGGAAATCGTGCAAGATAGTCGCGTCATCCAC
TACGACTCCTTCAAAAATCGGACAACGACGATTCAGGAGAGAATCCTCGA
CTACCTCGAAGATGACGACGACTGGAAGGAGGGGAATATGAGTTCGTTCG
AGCCGAACGATTGGGAAATCGTGCAAGATAGT
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