mRNA_F-serratus_M_contig837.19748.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig837.19748.1
Unique NamemRNA_F-serratus_M_contig837.19748.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig837.19748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig837contigF-serratus_M_contig837:115940..116540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932472.7359393-CDS-F-serratus_M_contig837:115939..1160821622932472.7359393-CDS-F-serratus_M_contig837:115939..116082Fucus serratus maleCDSF-serratus_M_contig837 115940..116082 +
1690964325.4999688-CDS-F-serratus_M_contig837:115939..1160821690964325.4999688-CDS-F-serratus_M_contig837:115939..116082Fucus serratus maleCDSF-serratus_M_contig837 115940..116082 +
1622932472.757248-CDS-F-serratus_M_contig837:116400..1165391622932472.757248-CDS-F-serratus_M_contig837:116400..116539Fucus serratus maleCDSF-serratus_M_contig837 116401..116539 +
1690964325.5110707-CDS-F-serratus_M_contig837:116400..1165391690964325.5110707-CDS-F-serratus_M_contig837:116400..116539Fucus serratus maleCDSF-serratus_M_contig837 116401..116539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig837.19748.1prot_F-serratus_M_contig837.19748.1Fucus serratus malepolypeptideF-serratus_M_contig837 115940..116539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig837.19748.1

>prot_F-serratus_M_contig837.19748.1 ID=prot_F-serratus_M_contig837.19748.1|Name=mRNA_F-serratus_M_contig837.19748.1|organism=Fucus serratus male|type=polypeptide|length=94bp
QLKPNSPGSRTRLLRRGDAAAIKSGSASGSGGISEVKAALLSGGDGNWDD
YRKGTGGKYRKPRRRPHPCPCIGPGTHSLDYDQVANVYEERLFA
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mRNA from alignment at F-serratus_M_contig837:115940..116540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig837.19748.1 ID=mRNA_F-serratus_M_contig837.19748.1|Name=mRNA_F-serratus_M_contig837.19748.1|organism=Fucus serratus male|type=mRNA|length=601bp|location=Sequence derived from alignment at F-serratus_M_contig837:115940..116540+ (Fucus serratus male)
CAATTGAAGCCAAACTCTCCCGGGTCACGAACACGCCTTCTTCGAAGAGG
CGACGCTGCTGCTATTAAGAGCGGCTCTGCTAGTGGTTCCGGAGGCATTT
CCGAAGTGAAGGCGGCTCTGCTCAGCGGTGGTGATGGAAATTGGTACGTC
TGAGCCCCACCCCCCCCCCCCCCACCCGCATTTCTCTGCATCGCCACACA
CACACACACACTCATCAGTAAATTTCCAAAACATATGAAAAAGTAAGGAG
GCGTGTTTGGGTTGGATTCTTTTGGATGTTTTCTAGAATCTCCCTGGTAT
GGTATTATTGTATATAATACAGTATATACTAATATTGGTATTAATATCTG
CTTCGGTCTGAATCTGGAGCCAACCCAAGACCCGCGTTGTACTTTTTATC
ATATGTACTAAGTCTAATGCACTGTTTGCTCTACTGGTTATTGTGTCCCA
AAATAAAACAGGGATGATTACCGCAAAGGAACAGGTGGAAAATACCGTAA
ACCAAGGAGGCGCCCCCACCCCTGCCCGTGCATCGGGCCGGGCACCCACA
GCCTGGACTACGATCAAGTGGCGAACGTGTATGAGGAGAGGCTGTTCGCG
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig837:115940..116540+

>mRNA_F-serratus_M_contig837.19748.1 ID=mRNA_F-serratus_M_contig837.19748.1|Name=mRNA_F-serratus_M_contig837.19748.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig837:115940..116540+ (Fucus serratus male)
CAATTGAAGCCAAACTCTCCCGGGTCACGAACACGCCTTCTTCGAAGAGG
CGACGCTGCTGCTATTAAGAGCGGCTCTGCTAGTGGTTCCGGAGGCATTT
CCGAAGTGAAGGCGGCTCTGCTCAGCGGTGGTGATGGAAATTGCAATTGA
AGCCAAACTCTCCCGGGTCACGAACACGCCTTCTTCGAAGAGGCGACGCT
GCTGCTATTAAGAGCGGCTCTGCTAGTGGTTCCGGAGGCATTTCCGAAGT
GAAGGCGGCTCTGCTCAGCGGTGGTGATGGAAATTGGGATGATTACCGCA
AAGGAACAGGTGGAAAATACCGTAAACCAAGGAGGCGCCCCCACCCCTGC
CCGTGCATCGGGCCGGGCACCCACAGCCTGGACTACGATCAAGTGGCGAA
CGTGTATGAGGAGAGGCTGTTCGCGGGATGATTACCGCAAAGGAACAGGT
GGAAAATACCGTAAACCAAGGAGGCGCCCCCACCCCTGCCCGTGCATCGG
GCCGGGCACCCACAGCCTGGACTACGATCAAGTGGCGAACGTGTATGAGG
AGAGGCTGTTCGCG
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