mRNA_F-serratus_M_contig1261.1980.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1980.1
Unique NamemRNA_F-serratus_M_contig1261.1980.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:166671..167109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.3408456-UTR-F-serratus_M_contig1261:166670..1667971622929196.3408456-UTR-F-serratus_M_contig1261:166670..166797Fucus serratus maleUTRF-serratus_M_contig1261 166671..166797 +
1690962745.4023757-UTR-F-serratus_M_contig1261:166670..1667971690962745.4023757-UTR-F-serratus_M_contig1261:166670..166797Fucus serratus maleUTRF-serratus_M_contig1261 166671..166797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.360696-CDS-F-serratus_M_contig1261:166797..1671091622929196.360696-CDS-F-serratus_M_contig1261:166797..167109Fucus serratus maleCDSF-serratus_M_contig1261 166798..167109 +
1690962745.4178705-CDS-F-serratus_M_contig1261:166797..1671091690962745.4178705-CDS-F-serratus_M_contig1261:166797..167109Fucus serratus maleCDSF-serratus_M_contig1261 166798..167109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1980.1prot_F-serratus_M_contig1261.1980.1Fucus serratus malepolypeptideF-serratus_M_contig1261 166798..167109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1980.1

>prot_F-serratus_M_contig1261.1980.1 ID=prot_F-serratus_M_contig1261.1980.1|Name=mRNA_F-serratus_M_contig1261.1980.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MPPCERTKSDWHVSRGQSENAVTDVVSRSTGRRRFCRRTSSMLVAVTVLP
DLVSAHRPARPVHPGTAACHPLTNGRSRCGYVDAFARRNERRSRSDLASS
TWTR
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mRNA from alignment at F-serratus_M_contig1261:166671..167109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1980.1 ID=mRNA_F-serratus_M_contig1261.1980.1|Name=mRNA_F-serratus_M_contig1261.1980.1|organism=Fucus serratus male|type=mRNA|length=439bp|location=Sequence derived from alignment at F-serratus_M_contig1261:166671..167109+ (Fucus serratus male)
TTGATATACTCTGTATAAATTACACAAGTAGATTACTCTGGACATCGTTT
ATGTTGACCTTTACTAGTACTCGAGACTCCGCGGCCCGAAGGAACTGCAC
CTGACCGCTCTCGGCATCCCGGAACGTATGCCCCCATGCGAGAGAACGAA
GAGTGATTGGCACGTTTCTCGTGGTCAATCAGAGAATGCAGTGACGGACG
TCGTGTCACGCTCAACAGGGCGACGTCGGTTCTGTAGGCGGACCTCGTCG
ATGTTGGTCGCGGTCACCGTCCTACCCGATCTGGTTTCTGCTCATCGGCC
CGCTCGACCAGTGCATCCCGGCACCGCCGCGTGCCACCCGCTGACGAATG
GACGTAGCCGATGTGGCTATGTCGATGCATTCGCACGACGCAATGAGCGA
CGGTCTAGGTCAGATCTAGCATCTTCGACGTGGACTAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:166671..167109+

>mRNA_F-serratus_M_contig1261.1980.1 ID=mRNA_F-serratus_M_contig1261.1980.1|Name=mRNA_F-serratus_M_contig1261.1980.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig1261:166671..167109+ (Fucus serratus male)
ATGCCCCCATGCGAGAGAACGAAGAGTGATTGGCACGTTTCTCGTGGTCA
ATCAGAGAATGCAGTGACGGACGTCGTGTCACGCTCAACAGGGCGACGTC
GGTTCTGTAGGCGGACCTCGTCGATGTTGGTCGCGGTCACCGTCCTACCC
GATCTGGTTTCTGCTCATCGGCCCGCTCGACCAGTGCATCCCGGCACCGC
CGCGTGCCACCCGCTGACGAATGGACGTAGCCGATGTGGCTATGTCGATG
CATTCGCACGACGCAATGAGCGACGGTCTAGGTCAGATCTAGCATCTTCG
ACGTGGACTAGGATGCCCCCATGCGAGAGAACGAAGAGTGATTGGCACGT
TTCTCGTGGTCAATCAGAGAATGCAGTGACGGACGTCGTGTCACGCTCAA
CAGGGCGACGTCGGTTCTGTAGGCGGACCTCGTCGATGTTGGTCGCGGTC
ACCGTCCTACCCGATCTGGTTTCTGCTCATCGGCCCGCTCGACCAGTGCA
TCCCGGCACCGCCGCGTGCCACCCGCTGACGAATGGACGTAGCCGATGTG
GCTATGTCGATGCATTCGCACGACGCAATGAGCGACGGTCTAGGTCAGAT
CTAGCATCTTCGACGTGGACTAGG
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