mRNA_F-serratus_M_contig836.19739.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig836.19739.1
Unique NamemRNA_F-serratus_M_contig836.19739.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A0V0IXE8_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IXE8_SOLCH)

HSP 1 Score: 91.7 bits (226), Expect = 5.720e-19
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY 348
            A+K EI    +N  W  V  P++K  +G +  +K K   DG++E++K R V +     +G  YHE  SP+   S++RAV+S AA+KGW+   +DV   +LQ D+ E +Y+ +P+ +
Sbjct:  460 AMKNEIQALEDNKTWEIVTLPQEKKAIGCRWVYKIKYKADGEVERFKARLVAKGYSQKEGLDYHETFSPVVRMSTVRAVISVAAIKGWKLYQMDVYNAFLQGDLYEEVYMNIPEGF 575          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A2K3JS97_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JS97_TRIPR)

HSP 1 Score: 87.0 bits (214), Expect = 1.570e-18
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY-RAFSNAVGLLRKATY 393
            A+  E++    N  W+ V  P  K  +G K  +K K   +G IE+YK R V Q    ++G  Y +  SP+   +++R +LS AA+KGW    +DV   +L  D+ E++Y+ LP  Y    S+ V  L K+ Y
Sbjct:   79 AMATELHALAKNNTWSVVSLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQMEGVDYFDTFSPVAKLTTVRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEDVYMVLPPGYPTTHSSQVCKLNKSLY 210          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 85.9 bits (211), Expect = 2.140e-18
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRAF--------SNAVGLLRKATY 393
            A+  E N    N  WT V+RP+ KTV+G++  F+ K+  DG +E+ K R V +    + G HY+E  + +   SS+R V++ AA +  E   +D    YL  +I E IY+E+PK+             N V  ++KA Y
Sbjct:   35 AMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALY 173          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A2G2YGH0_CAPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2YGH0_CAPAN)

HSP 1 Score: 83.6 bits (205), Expect = 5.500e-18
Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    4 LKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYR 351
            +  E+     N  W  V+ PK K  +G+K  +K K   +G++E++K R V +     +G  YHE  SP+    ++R  ++ AA +GW    +DV   +LQ D+ E +YIE+P+ +R
Sbjct:    1 MTSEVQALEANNTWVIVDLPKGKNTVGSKWIYKIKYLSNGEVERFKERLVAKGYSQQEGLDYHETFSPVAKMVTVRCTITLAASQGWNLYQMDVHNAFLQGDLEEEVYIEIPEGFR 116          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A2P6Q6C4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6C4_ROSCH)

HSP 1 Score: 88.6 bits (218), Expect = 7.140e-18
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY-RAFSNAVGLLRKATY 393
            A+ +EI     N  W+ V  P DK  +G K  +K K   DG +E+YK R V +    V G  Y E  +P+   +++R +LS AA++GW    +DV   +L  D+ E++Y++LP  + R   N V  L K+ Y
Sbjct:  604 AMDKEIQALQENKTWSLVPLPPDKKPIGCKWVYKIKHNPDGTVERYKARLVAKGYSQVAGIDYRETFAPVAKLTTVRVLLSLAALQGWHLHQLDVNNAFLNGDLYEDVYMKLPPGFGRKGENRVCKLHKSVY 735          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A6A3AWP1_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AWP1_HIBSY)

HSP 1 Score: 88.2 bits (217), Expect = 9.950e-18
Identity = 46/135 (34.07%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRAFSNA----VGLLRKATY 393
            A+  E     NNG WT V  PKD+ V+G K  F+ K   DG + +YK R V +    V G  + +  SP+   S+   VL+ A   GWE RHID+   +L  D+ E ++++ P  +          V  L+KA Y
Sbjct: 1034 AVHEEYKALTNNGTWTLVRLPKDRMVVGCKWLFRVKRNPDGSVNRYKARLVAKGFSQVPGQDFKDTFSPVVRFSTFNTVLAVAVSNGWEIRHIDINNAFLNGDLSEEVFMQQPPGFEQEDECNRPLVCKLKKALY 1168          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO)

HSP 1 Score: 87.8 bits (216), Expect = 1.290e-17
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY 348
            A++ E N  + N  W  V  PKD+  L TK  F++K+G +G+I +YK R V +  + ++GF + E  S +  A+S R + +  A+ GW    ID+   +L  DI E IYI  P+ Y
Sbjct:  301 AIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEGFDFTETYSNVVKAASYRILFAMTALYGWHCYQIDITTAFLNGDIDEEIYIRAPEGY 416          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: UPI001004D57F (LOW QUALITY PROTEIN: uncharacterized protein LOC107027889 n=1 Tax=Solanum pennellii TaxID=28526 RepID=UPI001004D57F)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-17
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRA-FSNAVGLLRKATY 393
            A+++EI     N  W+ V+ PK    +G+K  +K K   DGQ+E++K R V +     +G  YH+  SP+    ++R V++ A  KGW    +DV   +LQ D+ E +Y+E+P+ +R    N V  L K+ Y
Sbjct:  962 AMQQEIQALEENNTWSIVDLPKGMHTVGSKWIYKIKYKADGQVERFKARLVAKGYSQQEGLDYHDTFSPVAKMVTVRCVIALAVSKGWPMYQMDVYNAFLQGDLEEEVYMEMPEGFRKPGENKVCKLLKSLY 1093          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A061FAW7_THECC (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061FAW7_THECC)

HSP 1 Score: 83.6 bits (205), Expect = 1.870e-17
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    4 LKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDY 348
            +K +I    NNG W+ +  PK    +G K  +K K+     +EKYK R V +    ++GF YHE  SP+   +++R  L+  A+KGW    +D++  +L  D+ E IY++LP  Y
Sbjct:    1 MKSKIKALENNGTWSIISFPKYAHSIGCKWVYKVKLKAYRSLEKYKARLVAKGHSQLEGFDYHETFSPVAKQATVRTCLAHVAIKGWVLSQLDIDIAFLNGDLEETIYMDLPLSY 115          
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Match: A0A151SYP7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SYP7_CAJCA)

HSP 1 Score: 82.8 bits (203), Expect = 2.120e-17
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRFVTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYLQADIGENIYIELPKDYRAFSNAV 369
            A+K+E N  +NNG WT V  P +KT +G K  F+ K   DG + KYK R V +      G  Y+E  SP+    ++R +L+ A    W  + +DV   +L  ++ E +Y+  P  + +   A+
Sbjct:   40 AMKQEYNALLNNGTWTLVSLPPNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILTLALTHHWSIQQLDVNNAFLNDNLQEEVYMSQPPGFESSDKAL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig836.19739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V0IXE8_SOLCH5.720e-1936.21Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A2K3JS97_TRIPR1.570e-1834.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE2.140e-1833.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G2YGH0_CAPAN5.500e-1832.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6Q6C4_ROSCH7.140e-1834.85Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A6A3AWP1_HIBSY9.950e-1834.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A1E1KFU7_9HELO1.290e-1736.21Uncharacterized protein n=1 Tax=Rhynchosporium com... [more]
UPI001004D57F1.350e-1734.09LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A061FAW7_THECC1.870e-1734.78Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
A0A151SYP7_CAJCA2.120e-1732.52Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig836contigF-serratus_M_contig836:112679..113071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue8.2e-16
Seed eggNOG ortholog71139.XP_010066627.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932471.5814786-CDS-F-serratus_M_contig836:112678..1130711622932471.5814786-CDS-F-serratus_M_contig836:112678..113071Fucus serratus maleCDSF-serratus_M_contig836 112679..113071 +
1690964324.8712165-CDS-F-serratus_M_contig836:112678..1130711690964324.8712165-CDS-F-serratus_M_contig836:112678..113071Fucus serratus maleCDSF-serratus_M_contig836 112679..113071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig836.19739.1prot_F-serratus_M_contig836.19739.1Fucus serratus malepolypeptideF-serratus_M_contig836 112679..113071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig836.19739.1

>prot_F-serratus_M_contig836.19739.1 ID=prot_F-serratus_M_contig836.19739.1|Name=mRNA_F-serratus_M_contig836.19739.1|organism=Fucus serratus male|type=polypeptide|length=131bp
ALKREINGQINNGVWTQVERPKDKTVLGTKTPFKRKVGKDGQIEKYKYRF
VTQRCRPVKGFHYHELSSPIPTASSMRAVLSTAAVKGWEHRHIDVEQVYL
QADIGENIYIELPKDYRAFSNAVGLLRKATY
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mRNA from alignment at F-serratus_M_contig836:112679..113071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig836.19739.1 ID=mRNA_F-serratus_M_contig836.19739.1|Name=mRNA_F-serratus_M_contig836.19739.1|organism=Fucus serratus male|type=mRNA|length=393bp|location=Sequence derived from alignment at F-serratus_M_contig836:112679..113071+ (Fucus serratus male)
GCGCTAAAGAGAGAAATTAACGGTCAGATCAATAACGGCGTATGGACACA AGTGGAGCGCCCGAAAGACAAGACTGTGCTTGGTACTAAGACCCCCTTTA AACGTAAGGTCGGAAAGGATGGCCAAATAGAGAAATACAAGTATCGGTTT GTGACCCAGAGGTGTCGCCCGGTAAAAGGGTTTCACTATCATGAGCTGTC CTCTCCCATTCCTACGGCCTCCAGCATGAGGGCAGTACTTTCCACCGCAG CCGTGAAGGGTTGGGAACACCGACACATCGATGTAGAGCAAGTATATCTT CAGGCCGACATCGGTGAAAATATCTACATCGAACTACCCAAAGACTACCG CGCGTTTTCGAACGCGGTCGGCTTGCTGAGGAAGGCCACGTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig836:112679..113071+

>mRNA_F-serratus_M_contig836.19739.1 ID=mRNA_F-serratus_M_contig836.19739.1|Name=mRNA_F-serratus_M_contig836.19739.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig836:112679..113071+ (Fucus serratus male)
GCGCTAAAGAGAGAAATTAACGGTCAGATCAATAACGGCGTATGGACACA
AGTGGAGCGCCCGAAAGACAAGACTGTGCTTGGTACTAAGACCCCCTTTA
AACGTAAGGTCGGAAAGGATGGCCAAATAGAGAAATACAAGTATCGGTTT
GTGACCCAGAGGTGTCGCCCGGTAAAAGGGTTTCACTATCATGAGCTGTC
CTCTCCCATTCCTACGGCCTCCAGCATGAGGGCAGTACTTTCCACCGCAG
CCGTGAAGGGTTGGGAACACCGACACATCGATGTAGAGCAAGTATATCTT
CAGGCCGACATCGGTGAAAATATCTACATCGAACTACCCAAAGACTACCG
CGCGTTTTCGAACGCGGTCGGCTTGCTGAGGAAGGCCACGTATGCGCTAA
AGAGAGAAATTAACGGTCAGATCAATAACGGCGTATGGACACAAGTGGAG
CGCCCGAAAGACAAGACTGTGCTTGGTACTAAGACCCCCTTTAAACGTAA
GGTCGGAAAGGATGGCCAAATAGAGAAATACAAGTATCGGTTTGTGACCC
AGAGGTGTCGCCCGGTAAAAGGGTTTCACTATCATGAGCTGTCCTCTCCC
ATTCCTACGGCCTCCAGCATGAGGGCAGTACTTTCCACCGCAGCCGTGAA
GGGTTGGGAACACCGACACATCGATGTAGAGCAAGTATATCTTCAGGCCG
ACATCGGTGAAAATATCTACATCGAACTACCCAAAGACTACCGCGCGTTT
TCGAACGCGGTCGGCTTGCTGAGGAAGGCCACGTAT
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