mRNA_F-serratus_M_contig834.19729.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig834.19729.1
Unique NamemRNA_F-serratus_M_contig834.19729.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 5.510e-38
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 2 
Query:   29 RSKIPEPILQTIAGGLAGCASWVPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVL 304
            +S +PEP LQ +AGG+AGCA+W+PPVY LDVIKTR+Q+A PG Y G WDC  KT R+EGT +  RGLG S+LRAFP+HGL+F+GYETT+ +L
Sbjct:  154 KSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLL 245
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 7.030e-37
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 2 
Query:    2 FFIPEDPARRSKIPEPILQTIAGGLAGCASWVPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVL 304
            +F+P D    + +PEPIL  +AGGLAGC  W+PP+Y LDVIKTRMQTA PG Y G+ DC  KT RAEG  +  RGLG ++LRAFP+HGL+FLGYETT+ +L
Sbjct:  115 YFLPPD-RTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 214
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.640e-34
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:    2 FFIPEDPARRSKIPEPILQTIAGGLAGCASWVPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVL 304
            + +P D    + +PEP+L  +AGGLAGC  W+PP Y LDVIKTRMQTA PG Y G+ DC  KT RAEG  +  RGLG ++LRAFP+HGL+FLGYETT+ +L
Sbjct:  190 YLLPPD-RTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 289
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.590e-27
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 2 
Query:   17 DPARRSKIP-----EPILQTIAGGLAGCASWVPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVL 304
            D A+R+ +P      PI   +AGG+AG   W+PP+Y +DV+KT++QTAAPGTY  I D   KT   EGT+   RGLGPSL+RAFPLH  IF GYE T++ L
Sbjct:  147 DVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 247
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: A0A015LHJ7_RHIIW (Crc1p n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015LHJ7_RHIIW)

HSP 1 Score: 86.3 bits (212), Expect = 9.100e-19
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:   47 PILQTIAGGLAGCASW---VPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVLD 307
            P     AGG+AG A W   +PP    DVIK+R+QTA PGTY   +DC  KT   +GT+   +G+GP+L RAFP +   FLGYE +L +++
Sbjct:   75 PAAVLFAGGMAGVAMWSIAIPP----DVIKSRLQTAPPGTYKNAFDCLRKTIAQDGTKALFKGIGPALFRAFPANAATFLGYEASLKIMN 160
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: A0A0L0S2A6_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S2A6_ALLM3)

HSP 1 Score: 87.4 bits (215), Expect = 4.380e-18
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 2 
Query:    2 FFIPEDPARRSKIPE--------PILQTIAGGLAGCASWVPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVLD 307
            +F+  +  +R+  PE        P+   +AGG+AG A+W   +  LDV+K+R+QTA PGTYSG+ D   KT + EG     RGLGP+++RAFP +   FLG E +L +++
Sbjct:  191 YFVAYEGIKRALTPEGAKPEDLSPLAVFMAGGMAGMANWAVAI-PLDVLKSRLQTAPPGTYSGVRDVLVKTVQQEGVSALFRGLGPAMVRAFPANAACFLGVEVSLKIMN 299
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: U9T0Y6_RHIID (Mitochondrial carrier protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=U9T0Y6_RHIID)

HSP 1 Score: 86.3 bits (212), Expect = 1.390e-17
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:   47 PILQTIAGGLAGCASW---VPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVLD 307
            P     AGG+AG A W   +PP    DVIK+R+QTA PGTY   +DC  KT   +GT+   +G+GP+L RAFP +   FLGYE +L +++
Sbjct:  227 PAAVLFAGGMAGVAMWSIAIPP----DVIKSRLQTAPPGTYKNAFDCLRKTIAQDGTKALFKGIGPALFRAFPANAATFLGYEASLKIMN 312
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: A0A812T2N0_9DINO (SLC25A29 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T2N0_9DINO)

HSP 1 Score: 85.5 bits (210), Expect = 2.220e-17
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:   68 GGLAGCASWVPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVL 304
            G LAG   W+PP+Y +DV+K+R+Q A  GTYS +  C    +   G R+F RGLGP+++R  PLH   FL YET + VL
Sbjct:  215 GALAGVIQWLPPLYCVDVVKSRLQGAPVGTYSSMRHCAESLYAEHGWRVFVRGLGPTIIRGLPLHATTFLTYETLMRVL 293
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BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: A0A397G3H8_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G3H8_9GLOM)

HSP 1 Score: 85.5 bits (210), Expect = 2.690e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:   47 PILQTIAGGLAGCASW---VPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVLD 307
            P+    AGG+AG A W   +PP    DVIK+R+Q+A  GTYSG  DC  KT ++EG +   +G+GP+ LRAFP +   FLGYE +L V++
Sbjct:  227 PLSVLFAGGMAGVAMWTIAIPP----DVIKSRIQSAPAGTYSGFMDCLRKTVKSEGPKALFKGIGPAFLRAFPANAGAFLGYEASLKVMN 312
[Close]
BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Match: UPI0004623AA9 (mitochondrial carrier n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004623AA9)

HSP 1 Score: 85.1 bits (209), Expect = 3.330e-17
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 2 
Query:   62 IAGGLAGCASW---VPPVYTLDVIKTRMQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGYETTLSVLDG 310
            +AGG+AG A W   +PP    DV+K+R+Q+A  GTYSG  DC  KT   +G R   RGLGP++ RAFP +   FLG E T  +LDG
Sbjct:  222 VAGGMAGIAMWSIAIPP----DVLKSRIQSAPTGTYSGFMDCARKTIAQDGVRALWRGLGPAMARAFPANAATFLGVEATKKLLDG 303
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig834.19729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLY9_ECTSI5.510e-3865.22Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
D7FM07_ECTSI7.030e-3761.39Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A6H5JUA4_9PHAE2.640e-3459.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8G7_9STRA2.590e-2753.47Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
A0A015LHJ7_RHIIW9.100e-1946.67Crc1p n=1 Tax=Rhizophagus irregularis (strain DAOM... [more]
A0A0L0S2A6_ALLM34.380e-1840.91Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
U9T0Y6_RHIID1.390e-1746.67Mitochondrial carrier protein n=7 Tax=Rhizophagus ... [more]
A0A812T2N0_9DINO2.220e-1748.10SLC25A29 protein n=1 Tax=Symbiodinium sp. KB8 TaxI... [more]
A0A397G3H8_9GLOM2.690e-1747.78Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
UPI0004623AA93.330e-1750.00mitochondrial carrier n=1 Tax=Trametes versicolor ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig834contigF-serratus_M_contig834:7354..8110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog2880.D7FLY9
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size395
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig834.19729.1prot_F-serratus_M_contig834.19729.1Fucus serratus malepolypeptideF-serratus_M_contig834 7487..8064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932470.160976-UTR-F-serratus_M_contig834:7353..74861622932470.160976-UTR-F-serratus_M_contig834:7353..7486Fucus serratus maleUTRF-serratus_M_contig834 7354..7486 +
1690964324.2032278-UTR-F-serratus_M_contig834:7353..74861690964324.2032278-UTR-F-serratus_M_contig834:7353..7486Fucus serratus maleUTRF-serratus_M_contig834 7354..7486 +
1622932470.2340624-UTR-F-serratus_M_contig834:8064..81101622932470.2340624-UTR-F-serratus_M_contig834:8064..8110Fucus serratus maleUTRF-serratus_M_contig834 8065..8110 +
1690964324.2383902-UTR-F-serratus_M_contig834:8064..81101690964324.2383902-UTR-F-serratus_M_contig834:8064..8110Fucus serratus maleUTRF-serratus_M_contig834 8065..8110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932470.186973-CDS-F-serratus_M_contig834:7486..75481622932470.186973-CDS-F-serratus_M_contig834:7486..7548Fucus serratus maleCDSF-serratus_M_contig834 7487..7548 +
1690964324.2153416-CDS-F-serratus_M_contig834:7486..75481690964324.2153416-CDS-F-serratus_M_contig834:7486..7548Fucus serratus maleCDSF-serratus_M_contig834 7487..7548 +
1622932470.2092388-CDS-F-serratus_M_contig834:7910..80641622932470.2092388-CDS-F-serratus_M_contig834:7910..8064Fucus serratus maleCDSF-serratus_M_contig834 7911..8064 +
1690964324.2290688-CDS-F-serratus_M_contig834:7910..80641690964324.2290688-CDS-F-serratus_M_contig834:7910..8064Fucus serratus maleCDSF-serratus_M_contig834 7911..8064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig834.19729.1

>prot_F-serratus_M_contig834.19729.1 ID=prot_F-serratus_M_contig834.19729.1|Name=mRNA_F-serratus_M_contig834.19729.1|organism=Fucus serratus male|type=polypeptide|length=72bp
MQTAAPGTYSGIWDCTAKTWRAEGTRMFSRGLGPSLLRAFPLHGLIFLGY
ETTLSVLDGHFPLMGEKRCQN*
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mRNA from alignment at F-serratus_M_contig834:7354..8110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig834.19729.1 ID=mRNA_F-serratus_M_contig834.19729.1|Name=mRNA_F-serratus_M_contig834.19729.1|organism=Fucus serratus male|type=mRNA|length=757bp|location=Sequence derived from alignment at F-serratus_M_contig834:7354..8110+ (Fucus serratus male)
GTTTTTTATTCCGGAGGATCCGGCGAGACGAAGCAAGATCCCAGAGCCCA
TACTTCAGACTATAGCGGGGGGACTGGCAGGCTGTGCCTCGTGGGTGCCA
CCAGTGTACACTCTAGATGTGATCAAGACGAGAATGCAAACGGCGGCTCC
CGGAACGTACAGCGGCATTTGGGATTGTACTGCTAAAACATGGAGGTATG
GCATGTTGGCTGTTTTTACGGTGTCTCGCGAGAACAGTATGTGTTAGTTA
GAAGTGCTAAAACATTGTACTACTCAACCACGTGACTGACTACTCTTCTA
ATATAATGGTTTAGCCCTTGGAACTAATATTACGCCTAGGTACTTGAGCT
ATAGCAGCGGCACCTCTCCATAGGCCGACTGAGTAGTCTACTAGTGGTTT
AGCCCTTGTCACTAACAGTACGCCTTGTAGGTACTTGAACTATGGCCGGG
CCTCTCCGTAGGTCGACGCCGAGCCCTTAACCTGGCAAACGAAATCATAG
TACAAGTAGTTGTGCCAACATGCTTCTATTCCCGCTTGAATTGAACATTA
TTATCAGGGCCGAGGGGACGCGGATGTTTTCACGAGGGTTGGGCCCTTCC
TTGCTTCGGGCCTTCCCCTTGCATGGTCTCATCTTTCTCGGCTACGAGAC
AACTCTTTCGGTTTTGGATGGGCATTTCCCCTTGATGGGGGAAAAGCGGT
GTCAGAATTAGGATCGGCGGTATCCAATCGAACCGTGTCTTGTCCGTGGG
ATATGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig834:7354..8110+

>mRNA_F-serratus_M_contig834.19729.1 ID=mRNA_F-serratus_M_contig834.19729.1|Name=mRNA_F-serratus_M_contig834.19729.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig834:7354..8110+ (Fucus serratus male)
ATGCAAACGGCGGCTCCCGGAACGTACAGCGGCATTTGGGATTGTACTGC
TAAAACATGGAGATGCAAACGGCGGCTCCCGGAACGTACAGCGGCATTTG
GGATTGTACTGCTAAAACATGGAGGGCCGAGGGGACGCGGATGTTTTCAC
GAGGGTTGGGCCCTTCCTTGCTTCGGGCCTTCCCCTTGCATGGTCTCATC
TTTCTCGGCTACGAGACAACTCTTTCGGTTTTGGATGGGCATTTCCCCTT
GATGGGGGAAAAGCGGTGTCAGAATTAGGGCCGAGGGGACGCGGATGTTT
TCACGAGGGTTGGGCCCTTCCTTGCTTCGGGCCTTCCCCTTGCATGGTCT
CATCTTTCTCGGCTACGAGACAACTCTTTCGGTTTTGGATGGGCATTTCC
CCTTGATGGGGGAAAAGCGGTGTCAGAATTAG
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