mRNA_F-serratus_M_contig1261.1973.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1973.1
Unique NamemRNA_F-serratus_M_contig1261.1973.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1261.1973.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.440e-6
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = -2 
Query:  118 IHAALVSGGIKLRPRETKALLRALDVSHHRFVRLGLVDGKALRAV---DGIGRHSQ-GPSHG 291
            IH A ++GGI+LRPRE + LL ALDV   R  +LGLVDGK LRA+   +    H + GP HG
Sbjct:  263 IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHGPGHG 324
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BLAST of mRNA_F-serratus_M_contig1261.1973.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.300e-6
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = -2 
Query:  118 IHAALVSGGIKLRPRETKALLRALDVSHHRFVRLGLVDGKALRAV----DGIGRHSQGPSHG 291
            IH A ++GGI+LRPRE + LL ALDV   R  +LGLVDGK LRA+            GP HG
Sbjct:  252 IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHGPGHG 313
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BLAST of mRNA_F-serratus_M_contig1261.1973.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.380e-6
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = -2 
Query:  157 IHAALVSGGIKLRPRETKALLRALDVSHHRFVRLGLVDGKALRAV 291
            IH A ++GGI+LRPRE + LL ALDV   R  +LGLVDGK LRA+
Sbjct:  264 IHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 308
[Close]
BLAST of mRNA_F-serratus_M_contig1261.1973.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.600e-5
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = -2 
Query:  157 IHAALVSGGIKLRPRETKALLRALDVSHHRFVRLGLVDGKALRAV 291
            IH A ++GGI+LRPRE + LL ALDV   R  +LGLV+GK LRA+
Sbjct:  246 IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAM 290
[Close]
BLAST of mRNA_F-serratus_M_contig1261.1973.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.870e-5
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = -2 
Query:  157 IHAALVSGGIKLRPRETKALLRALDVSHHRFVRLGLVDGKALRAV 291
            IH A ++GGI+LRPRE + LL ALDV   R  +LGLV+GK LRA+
Sbjct:  236 IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAM 280
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAY7_9PHAE2.440e-653.23PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI3.300e-651.61PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE6.380e-662.22PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE1.600e-560.00PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI2.870e-560.00PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:60416..60995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size582
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.2844-UTR-F-serratus_M_contig1261:60415..605631622929196.2844-UTR-F-serratus_M_contig1261:60415..60563Fucus serratus maleUTRF-serratus_M_contig1261 60416..60563 +
1690962745.3770792-UTR-F-serratus_M_contig1261:60415..605631690962745.3770792-UTR-F-serratus_M_contig1261:60415..60563Fucus serratus maleUTRF-serratus_M_contig1261 60416..60563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.2982168-CDS-F-serratus_M_contig1261:60563..609951622929196.2982168-CDS-F-serratus_M_contig1261:60563..60995Fucus serratus maleCDSF-serratus_M_contig1261 60564..60995 +
1690962745.3925586-CDS-F-serratus_M_contig1261:60563..609951690962745.3925586-CDS-F-serratus_M_contig1261:60563..60995Fucus serratus maleCDSF-serratus_M_contig1261 60564..60995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1973.1prot_F-serratus_M_contig1261.1973.1Fucus serratus malepolypeptideF-serratus_M_contig1261 60564..60995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1973.1

>prot_F-serratus_M_contig1261.1973.1 ID=prot_F-serratus_M_contig1261.1973.1|Name=mRNA_F-serratus_M_contig1261.1973.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MPSTARRALPSTSPSLTKRWWLTSRARSRALVSRGRSLMPPLTRAAWMGR
RESGFDFGFGFGSSCILSSFSRVSSLPSPEVSPCSRSSASTCSASDVSFS
MSSPNIPLSSYLSFSSTSGLSSIAGSGAGDAPRSSLRGARPCTT
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mRNA from alignment at F-serratus_M_contig1261:60416..60995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1973.1 ID=mRNA_F-serratus_M_contig1261.1973.1|Name=mRNA_F-serratus_M_contig1261.1973.1|organism=Fucus serratus male|type=mRNA|length=580bp|location=Sequence derived from alignment at F-serratus_M_contig1261:60416..60995+ (Fucus serratus male)
GCCAGAGTGGTGCCGACCGTGAGGCGGGGGGCCAGAGTGCCCTATGTTCC
TACCAAATCGAGAACGATGGCCGTGTTTGCCCATGCCGGGTGGGTGTCCC
GGACGAAGGTGGTGTGAGCCATGCGAAGGACCCTGCGAATGACGTCCGAT
GCCGTCCACGGCGCGAAGGGCCTTGCCGTCCACGAGCCCGAGCCTTACAA
AGCGATGGTGGCTCACATCGAGAGCTCGAAGCAGGGCCTTGGTCTCGCGG
GGACGCAGTTTGATGCCGCCGCTCACCAGAGCCGCGTGGATGGGGCGCCG
CGAATCCGGCTTCGACTTCGGCTTCGGCTTCGGTTCCTCTTGCATATTGT
CGTCCTTTTCGAGGGTGTCATCATTGCCGTCTCCTGAGGTGTCCCCCTGT
TCTCGCTCATCTGCCTCCACCTGCTCCGCTTCCGACGTGTCATTCTCGAT
GTCATCTCCAAACATTCCTCTCTCCTCGTATCTCTCATTTTCTTCTACAT
CAGGGCTGTCCTCCATCGCGGGCAGTGGTGCAGGCGATGCTCCCAGAAGC
AGCCTTCGAGGAGCTAGACCCTGCACGACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:60416..60995+

>mRNA_F-serratus_M_contig1261.1973.1 ID=mRNA_F-serratus_M_contig1261.1973.1|Name=mRNA_F-serratus_M_contig1261.1973.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig1261:60416..60995+ (Fucus serratus male)
ATGCCGTCCACGGCGCGAAGGGCCTTGCCGTCCACGAGCCCGAGCCTTAC
AAAGCGATGGTGGCTCACATCGAGAGCTCGAAGCAGGGCCTTGGTCTCGC
GGGGACGCAGTTTGATGCCGCCGCTCACCAGAGCCGCGTGGATGGGGCGC
CGCGAATCCGGCTTCGACTTCGGCTTCGGCTTCGGTTCCTCTTGCATATT
GTCGTCCTTTTCGAGGGTGTCATCATTGCCGTCTCCTGAGGTGTCCCCCT
GTTCTCGCTCATCTGCCTCCACCTGCTCCGCTTCCGACGTGTCATTCTCG
ATGTCATCTCCAAACATTCCTCTCTCCTCGTATCTCTCATTTTCTTCTAC
ATCAGGGCTGTCCTCCATCGCGGGCAGTGGTGCAGGCGATGCTCCCAGAA
GCAGCCTTCGAGGAGCTAGACCCTGCACGACCATGCCGTCCACGGCGCGA
AGGGCCTTGCCGTCCACGAGCCCGAGCCTTACAAAGCGATGGTGGCTCAC
ATCGAGAGCTCGAAGCAGGGCCTTGGTCTCGCGGGGACGCAGTTTGATGC
CGCCGCTCACCAGAGCCGCGTGGATGGGGCGCCGCGAATCCGGCTTCGAC
TTCGGCTTCGGCTTCGGTTCCTCTTGCATATTGTCGTCCTTTTCGAGGGT
GTCATCATTGCCGTCTCCTGAGGTGTCCCCCTGTTCTCGCTCATCTGCCT
CCACCTGCTCCGCTTCCGACGTGTCATTCTCGATGTCATCTCCAAACATT
CCTCTCTCCTCGTATCTCTCATTTTCTTCTACATCAGGGCTGTCCTCCAT
CGCGGGCAGTGGTGCAGGCGATGCTCCCAGAAGCAGCCTTCGAGGAGCTA
GACCCTGCACGACC
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