mRNA_F-serratus_M_contig833.19727.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig833.19727.1
Unique NamemRNA_F-serratus_M_contig833.19727.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig833.19727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig833contigF-serratus_M_contig833:291431..291886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932468.2192013-CDS-F-serratus_M_contig833:291430..2918861622932468.2192013-CDS-F-serratus_M_contig833:291430..291886Fucus serratus maleCDSF-serratus_M_contig833 291431..291886 +
1690964323.3275516-CDS-F-serratus_M_contig833:291430..2918861690964323.3275516-CDS-F-serratus_M_contig833:291430..291886Fucus serratus maleCDSF-serratus_M_contig833 291431..291886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig833.19727.1prot_F-serratus_M_contig833.19727.1Fucus serratus malepolypeptideF-serratus_M_contig833 291431..291886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig833.19727.1

>prot_F-serratus_M_contig833.19727.1 ID=prot_F-serratus_M_contig833.19727.1|Name=mRNA_F-serratus_M_contig833.19727.1|organism=Fucus serratus male|type=polypeptide|length=152bp
AAAATAADTPSPTNTTSAGSVASATAALNNSSTGSGESAAANGVGDLRAP
SASRRHDGEAEQSHTVEAGIPVKAKPEEWSGWQSAEDTVAGTGDSPGVRR
SQSGGAGGRKESERVATGNQRGHEKIPSSDARASSGGKGGKRLGGGGRAL
GK
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mRNA from alignment at F-serratus_M_contig833:291431..291886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig833.19727.1 ID=mRNA_F-serratus_M_contig833.19727.1|Name=mRNA_F-serratus_M_contig833.19727.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig833:291431..291886+ (Fucus serratus male)
GCGGCCGCTGCGACGGCAGCGGATACGCCTTCGCCGACGAACACGACTTC
GGCCGGATCCGTCGCCTCGGCCACGGCTGCGTTGAATAATAGCAGCACGG
GATCAGGAGAGAGTGCTGCTGCAAACGGAGTCGGAGATCTCAGGGCGCCC
TCCGCCTCCAGACGGCACGATGGCGAGGCCGAACAGAGCCATACGGTGGA
GGCAGGGATCCCCGTGAAAGCGAAGCCGGAGGAGTGGAGTGGATGGCAAA
GCGCGGAAGATACAGTGGCCGGTACGGGCGATAGTCCTGGGGTCCGACGA
AGCCAAAGCGGTGGTGCCGGCGGCCGTAAGGAAAGCGAGCGGGTCGCGAC
TGGAAACCAACGTGGTCACGAGAAAATCCCTTCCTCCGACGCTCGCGCAT
CCTCGGGCGGCAAGGGGGGGAAGCGACTGGGCGGTGGCGGTAGGGCTTTG
GGTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig833:291431..291886+

>mRNA_F-serratus_M_contig833.19727.1 ID=mRNA_F-serratus_M_contig833.19727.1|Name=mRNA_F-serratus_M_contig833.19727.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig833:291431..291886+ (Fucus serratus male)
GCGGCCGCTGCGACGGCAGCGGATACGCCTTCGCCGACGAACACGACTTC
GGCCGGATCCGTCGCCTCGGCCACGGCTGCGTTGAATAATAGCAGCACGG
GATCAGGAGAGAGTGCTGCTGCAAACGGAGTCGGAGATCTCAGGGCGCCC
TCCGCCTCCAGACGGCACGATGGCGAGGCCGAACAGAGCCATACGGTGGA
GGCAGGGATCCCCGTGAAAGCGAAGCCGGAGGAGTGGAGTGGATGGCAAA
GCGCGGAAGATACAGTGGCCGGTACGGGCGATAGTCCTGGGGTCCGACGA
AGCCAAAGCGGTGGTGCCGGCGGCCGTAAGGAAAGCGAGCGGGTCGCGAC
TGGAAACCAACGTGGTCACGAGAAAATCCCTTCCTCCGACGCTCGCGCAT
CCTCGGGCGGCAAGGGGGGGAAGCGACTGGGCGGTGGCGGTAGGGCTTTG
GGTAAGGCGGCCGCTGCGACGGCAGCGGATACGCCTTCGCCGACGAACAC
GACTTCGGCCGGATCCGTCGCCTCGGCCACGGCTGCGTTGAATAATAGCA
GCACGGGATCAGGAGAGAGTGCTGCTGCAAACGGAGTCGGAGATCTCAGG
GCGCCCTCCGCCTCCAGACGGCACGATGGCGAGGCCGAACAGAGCCATAC
GGTGGAGGCAGGGATCCCCGTGAAAGCGAAGCCGGAGGAGTGGAGTGGAT
GGCAAAGCGCGGAAGATACAGTGGCCGGTACGGGCGATAGTCCTGGGGTC
CGACGAAGCCAAAGCGGTGGTGCCGGCGGCCGTAAGGAAAGCGAGCGGGT
CGCGACTGGAAACCAACGTGGTCACGAGAAAATCCCTTCCTCCGACGCTC
GCGCATCCTCGGGCGGCAAGGGGGGGAAGCGACTGGGCGGTGGCGGTAGG
GCTTTGGGTAAG
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