mRNA_F-serratus_M_contig1261.1972.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1972.1
Unique NamemRNA_F-serratus_M_contig1261.1972.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:31196..32108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size570
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1972.1prot_F-serratus_M_contig1261.1972.1Fucus serratus malepolypeptideF-serratus_M_contig1261 31675..32022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.1952162-UTR-F-serratus_M_contig1261:31195..312231622929196.1952162-UTR-F-serratus_M_contig1261:31195..31223Fucus serratus maleUTRF-serratus_M_contig1261 31196..31223 +
1690962745.3187358-UTR-F-serratus_M_contig1261:31195..312231690962745.3187358-UTR-F-serratus_M_contig1261:31195..31223Fucus serratus maleUTRF-serratus_M_contig1261 31196..31223 +
1622929196.2127903-UTR-F-serratus_M_contig1261:31566..316741622929196.2127903-UTR-F-serratus_M_contig1261:31566..31674Fucus serratus maleUTRF-serratus_M_contig1261 31567..31674 +
1690962745.336996-UTR-F-serratus_M_contig1261:31566..316741690962745.336996-UTR-F-serratus_M_contig1261:31566..31674Fucus serratus maleUTRF-serratus_M_contig1261 31567..31674 +
1622929196.2339954-UTR-F-serratus_M_contig1261:32022..321081622929196.2339954-UTR-F-serratus_M_contig1261:32022..32108Fucus serratus maleUTRF-serratus_M_contig1261 32023..32108 +
1690962745.3666532-UTR-F-serratus_M_contig1261:32022..321081690962745.3666532-UTR-F-serratus_M_contig1261:32022..32108Fucus serratus maleUTRF-serratus_M_contig1261 32023..32108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.2233074-CDS-F-serratus_M_contig1261:31674..320221622929196.2233074-CDS-F-serratus_M_contig1261:31674..32022Fucus serratus maleCDSF-serratus_M_contig1261 31675..32022 +
1690962745.3587384-CDS-F-serratus_M_contig1261:31674..320221690962745.3587384-CDS-F-serratus_M_contig1261:31674..32022Fucus serratus maleCDSF-serratus_M_contig1261 31675..32022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1972.1

>prot_F-serratus_M_contig1261.1972.1 ID=prot_F-serratus_M_contig1261.1972.1|Name=mRNA_F-serratus_M_contig1261.1972.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MAPYSDEKNFDDAYDVSMHMKLGDNRGVMVLGWPEFDVNSKECAIESTRA
AAFSVVNRSDNPNCTLELRETCTPTWDSKSMFVWCELTLKSLMDLAPRVE
VTIAHNRPPQKALFD*
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mRNA from alignment at F-serratus_M_contig1261:31196..32108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1972.1 ID=mRNA_F-serratus_M_contig1261.1972.1|Name=mRNA_F-serratus_M_contig1261.1972.1|organism=Fucus serratus male|type=mRNA|length=913bp|location=Sequence derived from alignment at F-serratus_M_contig1261:31196..32108+ (Fucus serratus male)
ACACCATCGTGTACACAGGAAACTGTTCGTAAGTCATGTTTCCTTTCTAT
ACTGTACACAAATATTGCGCTTATTAGCGATGAAAAAGGTATACAGTACC
TGTTCAGCAGGATGTAAAATTATAGATTGGATTGCGAGCCTGCAGGTTTG
CATTATGCACAGATAAGTACGCTACTGCTTTTGGTCTTCATGGCGTTGTT
ACCAGTAAGACTGTTTCCAACTACGGAAACAATTCAACATCAAAGAACAA
AAAAGTGGACTGTGGGCCTATAATTAGACTCCTTTAGCGGAGGAGTAAGG
TGAGCGTACTATACGACATATGTCAGGGTAGATGTAATGTTGTTCCCACG
TCTTGTGTGTCGCCGTCGCAGAAACCTGCGCAGGGGCTTCCTGCGCTTGA
GGTTGCCACTTCGAAAAACGAAGGGTTTGGACTTTTCCTGCGTTCGGCTG
CCGCGTCAGAGGAAGTTGTGCTTAGAGCAATGGCACCCTACTCGGACGAG
AAAAACTTCGATGATGCCTACGACGTCAGTATGCATATGAAGCTTGGCGA
CAATAGAGGAGTAATGGTGCTTGGTTGGCCCGAGTTCGACGTTAACAGCA
AGGAATGTGCAATAGAGTCGACGCGAGCAGCCGCGTTCTCTGTGGTGAAC
CGTTCAGATAATCCTAATTGTACTTTGGAGCTGCGTGAAACATGTACACC
CACATGGGACTCCAAATCGATGTTCGTGTGGTGTGAGCTTACGCTCAAAT
CGCTGATGGATTTGGCTCCTAGAGTTGAGGTCACGATCGCTCACAATCGC
CCGCCTCAGAAGGCATTATTCGATTAACTTAAAAAATGTGGGACGGGGGC
GCATGGAGGGAAGGCAACAAGGGCGATGGGTGACTGCGACACAACATTTT
CTTTTGTTATCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:31196..32108+

>mRNA_F-serratus_M_contig1261.1972.1 ID=mRNA_F-serratus_M_contig1261.1972.1|Name=mRNA_F-serratus_M_contig1261.1972.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig1261:31196..32108+ (Fucus serratus male)
ATGGCACCCTACTCGGACGAGAAAAACTTCGATGATGCCTACGACGTCAG
TATGCATATGAAGCTTGGCGACAATAGAGGAGTAATGGTGCTTGGTTGGC
CCGAGTTCGACGTTAACAGCAAGGAATGTGCAATAGAGTCGACGCGAGCA
GCCGCGTTCTCTGTGGTGAACCGTTCAGATAATCCTAATTGTACTTTGGA
GCTGCGTGAAACATGTACACCCACATGGGACTCCAAATCGATGTTCGTGT
GGTGTGAGCTTACGCTCAAATCGCTGATGGATTTGGCTCCTAGAGTTGAG
GTCACGATCGCTCACAATCGCCCGCCTCAGAAGGCATTATTCGATTAAAT
GGCACCCTACTCGGACGAGAAAAACTTCGATGATGCCTACGACGTCAGTA
TGCATATGAAGCTTGGCGACAATAGAGGAGTAATGGTGCTTGGTTGGCCC
GAGTTCGACGTTAACAGCAAGGAATGTGCAATAGAGTCGACGCGAGCAGC
CGCGTTCTCTGTGGTGAACCGTTCAGATAATCCTAATTGTACTTTGGAGC
TGCGTGAAACATGTACACCCACATGGGACTCCAAATCGATGTTCGTGTGG
TGTGAGCTTACGCTCAAATCGCTGATGGATTTGGCTCCTAGAGTTGAGGT
CACGATCGCTCACAATCGCCCGCCTCAGAAGGCATTATTCGATTAA
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