mRNA_F-serratus_M_contig8328.19719.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8328.19719.1
Unique NamemRNA_F-serratus_M_contig8328.19719.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: D8LG30_ECTSI (ATP-cone domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG30_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.580e-30
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            M+VVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTT EL
Sbjct:    1 MFVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTIEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A2D4BGQ6_PYTIN (Ribonucleoside-diphosphate reductase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGQ6_PYTIN)

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-22
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYVVKRDGR+EDVKFDKIT+RI KLCYGL++ FVD IKISQKV+ GVYPGVTTSEL
Sbjct:    1 MYVVKRDGRREDVKFDKITARITKLCYGLNADFVDPIKISQKVVAGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A0W8D6Y3_PHYNI (Ribonucleoside-diphosphate reductase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D6Y3_PHYNI)

HSP 1 Score: 96.7 bits (239), Expect = 1.240e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV+KRDGR+EDVKFDKIT+RI KLCYGL+  +VD++KISQKV+ GVYPGVTTSEL
Sbjct:    1 MYVIKRDGRREDVKFDKITARITKLCYGLNPDYVDAVKISQKVVAGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A5D6Y7V4_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7V4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.820e-22
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV+KRDGR+EDVKFDKIT+RI KLCYGL+ ++VD IKISQKV+ GVYPGVTTSEL
Sbjct:    1 MYVLKRDGRREDVKFDKITARITKLCYGLNEQYVDPIKISQKVVAGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A2P4YC36_9STRA (Ribonucleoside-diphosphate reductase (Fragment) n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4YC36_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.080e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV+KRDGR+EDVKFDKIT+RI KLCYGL+  +VD++KISQKV+ GVYPGVTTSEL
Sbjct:    1 MYVIKRDGRQEDVKFDKITARITKLCYGLNPDYVDAVKISQKVVAGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: K3WIN6_GLOUD (Ribonucleoside-diphosphate reductase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIN6_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 9.720e-22
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV+KRDGR+EDVKFDKIT+RI KLCYGL+  +VD IKISQKV+ GVYPGVTTSEL
Sbjct:    1 MYVLKRDGRREDVKFDKITARITKLCYGLNEDYVDPIKISQKVVAGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: M4B357_HYAAE (Ribonucleoside-diphosphate reductase n=26 Tax=Peronosporaceae TaxID=4777 RepID=M4B357_HYAAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.720e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV+KRDGR+EDVKFDKIT+RI KLCYGL+  +VD++KISQKV+ GVYPGVTTSEL
Sbjct:    1 MYVLKRDGRREDVKFDKITARITKLCYGLNPDYVDAVKISQKVVAGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A7S2S2A3_9STRA (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2A3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.200e-21
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV KRDGR+E V FDKITSRI+KLCYGLD +FVD + ISQKVIQGVYPGVTT+EL
Sbjct:    4 MYVQKRDGRRESVYFDKITSRISKLCYGLDVKFVDPVAISQKVIQGVYPGVTTTEL 59
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A835Z5N1_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.810e-21
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYVVKRDGR E V FDKITSRI KLCYGLD R+VD I +SQKVIQGVYPGVTTSEL
Sbjct:    1 MYVVKRDGRSEAVYFDKITSRIKKLCYGLDDRYVDPIILSQKVIQGVYPGVTTSEL 56
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BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Match: A0A482SL51_9ARCH (ATP-cone domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL51_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 2.260e-21
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTSEL 168
            MYV+KRDGR+E+V FDKITSRINKLCYGLD   VD+  ISQKV+ G+YPGVTT EL
Sbjct:    1 MYVIKRDGRRENVHFDKITSRINKLCYGLDPNHVDATIISQKVVPGLYPGVTTFEL 56
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8328.19719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG30_ECTSI1.580e-3096.43ATP-cone domain-containing protein (Fragment) n=1 ... [more]
A0A2D4BGQ6_PYTIN1.100e-2283.93Ribonucleoside-diphosphate reductase n=1 Tax=Pythi... [more]
A0A0W8D6Y3_PHYNI1.240e-2278.57Ribonucleoside-diphosphate reductase n=1 Tax=Phyto... [more]
A0A5D6Y7V4_9STRA3.820e-2280.36Ribonucleoside-diphosphate reductase n=1 Tax=Pythi... [more]
A0A2P4YC36_9STRA7.080e-2278.57Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
K3WIN6_GLOUD9.720e-2280.36Ribonucleoside-diphosphate reductase n=1 Tax=Globi... [more]
M4B357_HYAAE9.720e-2278.57Ribonucleoside-diphosphate reductase n=26 Tax=Pero... [more]
A0A7S2S2A3_9STRA1.200e-2180.36Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
A0A835Z5N1_9STRA1.810e-2183.93Ribonucleoside-diphosphate reductase n=1 Tax=Tribo... [more]
A0A482SL51_9ARCH2.260e-2175.00ATP-cone domain-containing protein n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8328contigF-serratus_M_contig8328:696..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D8LG30
Preferred nameRNR1
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0010035,GO:0010038,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046686,GO:0046704,GO:0046939,GO:0050896,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
EggNOG free text desc.ribonucleoside-diphosphate reductase activity
EggNOG OGsCOG0209@1,KOG1112@2759
Ec32 ortholog descriptionRibonucleotide reductase, large subunit
Ec32 orthologEc-11_002170.1
EC1.17.4.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons2
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932468.0045776-CDS-F-serratus_M_contig8328:695..7371622932468.0045776-CDS-F-serratus_M_contig8328:695..737Fucus serratus maleCDSF-serratus_M_contig8328 696..737 -
1690964323.2397497-CDS-F-serratus_M_contig8328:695..7371690964323.2397497-CDS-F-serratus_M_contig8328:695..737Fucus serratus maleCDSF-serratus_M_contig8328 696..737 -
1622932468.0185065-CDS-F-serratus_M_contig8328:1154..12801622932468.0185065-CDS-F-serratus_M_contig8328:1154..1280Fucus serratus maleCDSF-serratus_M_contig8328 1155..1280 -
1690964323.2550242-CDS-F-serratus_M_contig8328:1154..12801690964323.2550242-CDS-F-serratus_M_contig8328:1154..1280Fucus serratus maleCDSF-serratus_M_contig8328 1155..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8328.19719.1prot_F-serratus_M_contig8328.19719.1Fucus serratus malepolypeptideF-serratus_M_contig8328 696..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8328.19719.1

>prot_F-serratus_M_contig8328.19719.1 ID=prot_F-serratus_M_contig8328.19719.1|Name=mRNA_F-serratus_M_contig8328.19719.1|organism=Fucus serratus male|type=polypeptide|length=56bp
MYVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPG
VTTSEL
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mRNA from alignment at F-serratus_M_contig8328:696..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8328.19719.1 ID=mRNA_F-serratus_M_contig8328.19719.1|Name=mRNA_F-serratus_M_contig8328.19719.1|organism=Fucus serratus male|type=mRNA|length=585bp|location=Sequence derived from alignment at F-serratus_M_contig8328:696..1280- (Fucus serratus male)
ATGTACGTGGTAAAGAGAGACGGTAGGAAGGAGGACGTGAAGTTCGACAA
GATCACCTCGAGAATCAATAAGCTGTGCTATGGCCTCGACAGTCGTTTCG
TCGATTCCATCAAGATCTCGCAAAAGGTGAGCGTTCCGCCCGGTATCTTG
GGATTAATGGGTCTCAAAGTGAAAGGAGAAATCCTTTTGCCACGATTTTC
AAGCGCACTTATGGTATTAATGTATACAGAGTGTTCATTTGCTTATTCAC
CCGGCGGTACGCACTACAGGCAGAGCCTCCCCGCACGATGTTGCTTTTAA
TGTGAGCTGCGAATGTATGAGTGGACACATGAGCGCCTCGCTACGCGCGC
TGTATTTACTGATGCACGACCATCCATCGGCAGCCCTTCCGATAGACTTC
GTCTGAATCCGATCTAAATATCAGGATGAGGTTTTTTTCTTGTCCGCTCA
TGACGGTAAATCGTTCCTCTCCATCCGCCCGTATTCATCCCCGTTCCCAA
CGCCCCCCCCACCGTCGTTCACCTCCCTCCATCCCCCTCAAAGGTGATCC
AAGGAGTATACCCCGGGGTCACGACGTCCGAGCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig8328:696..1280-

>mRNA_F-serratus_M_contig8328.19719.1 ID=mRNA_F-serratus_M_contig8328.19719.1|Name=mRNA_F-serratus_M_contig8328.19719.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig8328:696..1280- (Fucus serratus male)
ATGTACGTGGTAAAGAGAGACGGTAGGAAGGAGGACGTGAAGTTCGACAA
GATCACCTCGAGAATCAATAAGCTGTGCTATGGCCTCGACAGTCGTTTCG
TCGATTCCATCAAGATCTCGCAAAAGATGTACGTGGTAAAGAGAGACGGT
AGGAAGGAGGACGTGAAGTTCGACAAGATCACCTCGAGAATCAATAAGCT
GTGCTATGGCCTCGACAGTCGTTTCGTCGATTCCATCAAGATCTCGCAAA
AGGTGATCCAAGGAGTATACCCCGGGGTCACGACGTCCGAGCTTGTGATC
CAAGGAGTATACCCCGGGGTCACGACGTCCGAGCTT
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