mRNA_F-serratus_M_contig830.19701.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig830.19701.1
Unique NamemRNA_F-serratus_M_contig830.19701.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig830.19701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig830contigF-serratus_M_contig830:108645..109074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932464.8511553-UTR-F-serratus_M_contig830:108644..1086481622932464.8511553-UTR-F-serratus_M_contig830:108644..108648Fucus serratus maleUTRF-serratus_M_contig830 108645..108648 +
1690964321.6148758-UTR-F-serratus_M_contig830:108644..1086481690964321.6148758-UTR-F-serratus_M_contig830:108644..108648Fucus serratus maleUTRF-serratus_M_contig830 108645..108648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932464.86471-CDS-F-serratus_M_contig830:108648..1090741622932464.86471-CDS-F-serratus_M_contig830:108648..109074Fucus serratus maleCDSF-serratus_M_contig830 108649..109074 +
1690964321.6300783-CDS-F-serratus_M_contig830:108648..1090741690964321.6300783-CDS-F-serratus_M_contig830:108648..109074Fucus serratus maleCDSF-serratus_M_contig830 108649..109074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig830.19701.1prot_F-serratus_M_contig830.19701.1Fucus serratus malepolypeptideF-serratus_M_contig830 108649..109074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig830.19701.1

>prot_F-serratus_M_contig830.19701.1 ID=prot_F-serratus_M_contig830.19701.1|Name=mRNA_F-serratus_M_contig830.19701.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MFPRSTRGLAGNSGGIGGEGDDHGDGLTRTRSNLDQGGSGAFLQACKSAY
RQHLPPGRKHPNPGDSDGVVGVISGTHTTSKALGEIDADSHAPHILRDTC
DGRMPSPTYPAVDFAGFDSGRRIINDDDDSGYVNDTGGEGSF
back to top

mRNA from alignment at F-serratus_M_contig830:108645..109074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig830.19701.1 ID=mRNA_F-serratus_M_contig830.19701.1|Name=mRNA_F-serratus_M_contig830.19701.1|organism=Fucus serratus male|type=mRNA|length=430bp|location=Sequence derived from alignment at F-serratus_M_contig830:108645..109074+ (Fucus serratus male)
AGCGATGTTTCCCAGGTCTACCCGAGGACTAGCGGGAAACAGCGGCGGTA
TTGGTGGTGAAGGTGACGATCATGGCGATGGCCTGACCAGAACACGCTCA
AACCTCGACCAAGGTGGCTCAGGGGCGTTCCTGCAAGCCTGCAAATCCGC
ATATCGCCAACATCTACCACCCGGAAGGAAACATCCGAACCCTGGTGACT
CTGACGGAGTGGTTGGTGTCATTTCAGGGACGCACACCACCTCGAAGGCG
CTTGGTGAAATCGACGCCGACAGCCATGCCCCCCACATACTGAGGGACAC
CTGTGACGGGCGGATGCCATCACCCACGTACCCTGCTGTGGACTTCGCAG
GGTTTGATTCCGGGAGGAGGATCATAAACGACGATGACGACAGCGGCTAT
GTAAATGATACGGGTGGTGAGGGCAGTTTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig830:108645..109074+

>mRNA_F-serratus_M_contig830.19701.1 ID=mRNA_F-serratus_M_contig830.19701.1|Name=mRNA_F-serratus_M_contig830.19701.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig830:108645..109074+ (Fucus serratus male)
ATGTTTCCCAGGTCTACCCGAGGACTAGCGGGAAACAGCGGCGGTATTGG
TGGTGAAGGTGACGATCATGGCGATGGCCTGACCAGAACACGCTCAAACC
TCGACCAAGGTGGCTCAGGGGCGTTCCTGCAAGCCTGCAAATCCGCATAT
CGCCAACATCTACCACCCGGAAGGAAACATCCGAACCCTGGTGACTCTGA
CGGAGTGGTTGGTGTCATTTCAGGGACGCACACCACCTCGAAGGCGCTTG
GTGAAATCGACGCCGACAGCCATGCCCCCCACATACTGAGGGACACCTGT
GACGGGCGGATGCCATCACCCACGTACCCTGCTGTGGACTTCGCAGGGTT
TGATTCCGGGAGGAGGATCATAAACGACGATGACGACAGCGGCTATGTAA
ATGATACGGGTGGTGAGGGCAGTTTCATGTTTCCCAGGTCTACCCGAGGA
CTAGCGGGAAACAGCGGCGGTATTGGTGGTGAAGGTGACGATCATGGCGA
TGGCCTGACCAGAACACGCTCAAACCTCGACCAAGGTGGCTCAGGGGCGT
TCCTGCAAGCCTGCAAATCCGCATATCGCCAACATCTACCACCCGGAAGG
AAACATCCGAACCCTGGTGACTCTGACGGAGTGGTTGGTGTCATTTCAGG
GACGCACACCACCTCGAAGGCGCTTGGTGAAATCGACGCCGACAGCCATG
CCCCCCACATACTGAGGGACACCTGTGACGGGCGGATGCCATCACCCACG
TACCCTGCTGTGGACTTCGCAGGGTTTGATTCCGGGAGGAGGATCATAAA
CGACGATGACGACAGCGGCTATGTAAATGATACGGGTGGTGAGGGCAGTT
TC
back to top