mRNA_F-serratus_M_contig1261.1979.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1261.1979.1
Unique NamemRNA_F-serratus_M_contig1261.1979.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1261.1979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1261contigF-serratus_M_contig1261:163383..166232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1428
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1261.1979.1prot_F-serratus_M_contig1261.1979.1Fucus serratus malepolypeptideF-serratus_M_contig1261 163827..165962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.0465107-UTR-F-serratus_M_contig1261:163382..1638261622929196.0465107-UTR-F-serratus_M_contig1261:163382..163826Fucus serratus maleUTRF-serratus_M_contig1261 163383..163826 -
1690962745.2689023-UTR-F-serratus_M_contig1261:163382..1638261690962745.2689023-UTR-F-serratus_M_contig1261:163382..163826Fucus serratus maleUTRF-serratus_M_contig1261 163383..163826 -
1622929196.0981276-UTR-F-serratus_M_contig1261:165962..1662321622929196.0981276-UTR-F-serratus_M_contig1261:165962..166232Fucus serratus maleUTRF-serratus_M_contig1261 165963..166232 -
1690962745.292065-UTR-F-serratus_M_contig1261:165962..1662321690962745.292065-UTR-F-serratus_M_contig1261:165962..166232Fucus serratus maleUTRF-serratus_M_contig1261 165963..166232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.0651348-CDS-F-serratus_M_contig1261:163826..1643061622929196.0651348-CDS-F-serratus_M_contig1261:163826..164306Fucus serratus maleCDSF-serratus_M_contig1261 163827..164306 -
1690962745.277003-CDS-F-serratus_M_contig1261:163826..1643061690962745.277003-CDS-F-serratus_M_contig1261:163826..164306Fucus serratus maleCDSF-serratus_M_contig1261 163827..164306 -
1622929196.082981-CDS-F-serratus_M_contig1261:165728..1659621622929196.082981-CDS-F-serratus_M_contig1261:165728..165962Fucus serratus maleCDSF-serratus_M_contig1261 165729..165962 -
1690962745.284395-CDS-F-serratus_M_contig1261:165728..1659621690962745.284395-CDS-F-serratus_M_contig1261:165728..165962Fucus serratus maleCDSF-serratus_M_contig1261 165729..165962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1261.1979.1

>prot_F-serratus_M_contig1261.1979.1 ID=prot_F-serratus_M_contig1261.1979.1|Name=mRNA_F-serratus_M_contig1261.1979.1|organism=Fucus serratus male|type=polypeptide|length=238bp
MSNAQREKEADENLSREDDLVEAIPITVLHGIDLEPGIPQQLRRSPVRGQ
HAVYRDSCQPRNTTPQVRDNAPIQCCYPITVEDPDEVVHARKIALAQATL
ETAFLVFCRSGWCVWTWMFAMPSSIIVASCCKHRVAYVVWGNINIFVCWF
HAVAAAEALGREDGYDWGVEYSRGFLLTVQVALCGVAVFAAHIGFKASSA
LRHQAVHSQAGHEIQVPMQASAYPAVEEHYPQSSTHP*
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mRNA from alignment at F-serratus_M_contig1261:163383..166232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1261.1979.1 ID=mRNA_F-serratus_M_contig1261.1979.1|Name=mRNA_F-serratus_M_contig1261.1979.1|organism=Fucus serratus male|type=mRNA|length=2850bp|location=Sequence derived from alignment at F-serratus_M_contig1261:163383..166232- (Fucus serratus male)
GCGAAAGAGAACTAGGCGAGGGTGGTATACTGTATGCTATGCGTGAGCGA
GAACCTCCTCATACTTGTTTCGTATTACTGTACTCACTTACGTGGCCGTT
TGGTCTGTGGTGGTCGAGGAGTTCGCTTGACAGAAATAAACAAGATTCTT
CCTGGAAACACGCGCTCGATGCCCCGTATGACATTCATGCGGGATCCATA
AATAGATCAACAACTAACAACAACAACAGCAAGCGGTAGGAGAAAAGTTG
TAGACCCAGCGCGATATTCAATGTCGAACGCCCAGCGCGAGAAAGAGGCC
GATGAAAACCTCTCCAGAGAAGACGATCTCGTCGAGGCTATACCGATCAC
CGTGCTACATGGAATAGATCTCGAACCAGGGATTCCTCAACAACTCCGCC
GTTCGCCGGTTCGAGGACAACATGCAGTGTATCGCGACAGTTGCCAGCCT
CGAAATACTACTCCTCAAGTACGAGATAATGCGCCCATACAATGCTGCTA
CCCGGTGAGATGATGTGCTCTTCTTTCTTTTGCTCGAATTTCGGGGGATT
TTTCCTCCTACAACAATAATATTTTAGAGAAAAATATGAACGCATCTAGA
CTTTCTGAGATGTCATCTTTGATCATTGATCTCCCAGTCAGGCAAGGAAA
ATGTCAAAACGTTGTACCGGTATTCGACAAGATAACAGGCCAGGTCGCCA
TACACTTATTTAACCGAATATTTTATTGCAGTATGTAATGTATTATTATG
CTGTTTTCCACCCACGAGAAGCGCATCTGATGATCATCGGTCGACGGCAG
GCATTGCACGCAATGTGTGTGTCTGGCTTGAGGGCTTGGGCAGCGACTAA
CAGTATAGAAGTCACCCGCAGCAGGCGTGAACACGCTTGTTTATTGTAGA
GATGGTCATGAGTCGATTGCCAAATCTTGATCTCGAGGAGAGCGTGAGAT
ATTTCCCACAAGAAGTGACCATACTGTTCCGCTCGATTGCCTCCGTCACC
TCACCTTAACTGCACCACACCCGTTAAAGTCACGATACAGCCTCATTCAC
CATTATTACATTATCGTATCTTCGACGGCCCTGATGACAAGGAGGATGGT
CTTCCGAGAATGTATAGCGGCGACCCAGCTCATACCGCCAGCTTCATGTA
TGGTCACACATTACATATAGCAAGAGTATGGATCAAGCTGGTAAGGTTTT
GCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAATATTCCCCTGTC
CGCGCTCGTGCCTGAGAATTTGGTCTCGCGAGACAGTTTCGGCAGTCCCG
TCCCGCGTCAGCCTGCTCATCTCCATACTCAGACTGAATCCGGTGCCTAC
TTACGGGATTCCTCCCGAGTTCCGCGGCGGCATCCATATATTTATATTAA
ACCACTATAATACGCCATCGAGTAAGTCCCGAGTTTATCGGGTCACGTAA
TTGCGTACCGATGACGTTCACTACCGAGAGTCCGTCGGCACAGGGCCAAT
AAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTTAGCAGATGACCATGG
ACCAATTAATATACGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTG
GGCATGTTGAAAGTAACGGGGTAATGCTCAACCATTCACAACGCATGTTG
GCCGTGTAGCGCATCATTTCAAGGTTTTCAGAAAACCTCTTGGACCACGT
GTTGTCCAGTCACCTAAAATATTATAAACTGGATAATAAATGATCTACTC
CTCCTTCCTACTTGTAGTATAACTTCTTCAGACTTGATTGTTTGTGCTGC
CCGATCCAAACTCTATTAACGGCTCTTATTATTTCCTGTATTCTGCGTAC
TCCCGGTGTTCTTCAAACTCACAATAACAACGCGTGTCACCCTTCTGCTC
AACGTCAATCGACGTGATGCCATCAGATAACCGTGGAAGATCCTGACGAG
GTGGTGCACGCCAGAAAGATTGCCCTCGCGCAGGCGACTCTCGAAACCGC
ATTCCTCGTATTTTGTCGATCGGGATGGTGTGTGTGGACATGGATGTTCG
CGATGCCGTCGTCCATCATCGTGGCGAGCTGCTGTAAGCACAGGGTCGCA
TACGTTGTCTGGGGCAATATAAATATCTTCGTTTGTTGGTTTCATGCGGT
GGCGGCGGCAGAAGCTTTGGGGCGAGAGGACGGCTATGATTGGGGTGTCG
AATACTCTCGTGGGTTTCTGCTTACGGTTCAGGTTGCTCTGTGCGGTGTC
GCCGTGTTCGCCGCGCACATCGGCTTTAAGGCTTCGTCAGCGTTGAGACA
CCAAGCGGTTCACTCACAAGCGGGGCACGAGATCCAGGTGCCAATGCAGG
CATCGGCGTATCCAGCCGTTGAGGAGCACTATCCGCAGTCAAGCACACAC
CCATGATAATATGTTGGAGATGGACAGTGGCGGTCTTCCGGTGTAGTGAA
CGATTCAAAGACAAAAGGAGGAATGAAGCAACACTGTACTTCATACAATA
CGTCGTTTTCGTTTTGAGAGAAAGACAGAGAGAGAGAGGCTGGAGATACA
GATATATATATTATACAAAGTTTAGTTTTTTTGCGATTTGTTTGAGGCTC
GTGTGGATAGCTCCCTTTGCCCCGAGTCCAGAGAACGCGCCCTCCATTAA
ACTAGTTGTTCGGCAGGCGGGCGGGCAGGGAATTTATAATAATACGTCCT
TTGTGGGCGTGAAAATGGCCATCGCATTTTTTGTCATGATGGGGTGAGTA
TAAGATGAGAGAACAACAACAACACGTGTGTGTACTGGGCTTACATATAC
CTGGTAGAACGCTAGGTCATCAACCGCGCTTGTCAGCACCACGGGAAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1261:163383..166232-

>mRNA_F-serratus_M_contig1261.1979.1 ID=mRNA_F-serratus_M_contig1261.1979.1|Name=mRNA_F-serratus_M_contig1261.1979.1|organism=Fucus serratus male|type=CDS|length=1428bp|location=Sequence derived from alignment at F-serratus_M_contig1261:163383..166232- (Fucus serratus male)
ATGTCGAACGCCCAGCGCGAGAAAGAGGCCGATGAAAACCTCTCCAGAGA
AGACGATCTCGTCGAGGCTATACCGATCACCGTGCTACATGGAATAGATC
TCGAACCAGGGATTCCTCAACAACTCCGCCGTTCGCCGGTTCGAGGACAA
CATGCAGTGTATCGCGACAGTTGCCAGCCTCGAAATACTACTCCTCAAGT
ACGAGATAATGCGCCCATACAATGCTGCTACCCGATGTCGAACGCCCAGC
GCGAGAAAGAGGCCGATGAAAACCTCTCCAGAGAAGACGATCTCGTCGAG
GCTATACCGATCACCGTGCTACATGGAATAGATCTCGAACCAGGGATTCC
TCAACAACTCCGCCGTTCGCCGGTTCGAGGACAACATGCAGTGTATCGCG
ACAGTTGCCAGCCTCGAAATACTACTCCTCAAGTACGAGATAATGCGCCC
ATACAATGCTGCTACCCGATAACCGTGGAAGATCCTGACGAGGTGGTGCA
CGCCAGAAAGATTGCCCTCGCGCAGGCGACTCTCGAAACCGCATTCCTCG
TATTTTGTCGATCGGGATGGTGTGTGTGGACATGGATGTTCGCGATGCCG
TCGTCCATCATCGTGGCGAGCTGCTGTAAGCACAGGGTCGCATACGTTGT
CTGGGGCAATATAAATATCTTCGTTTGTTGGTTTCATGCGGTGGCGGCGG
CAGAAGCTTTGGGGCGAGAGGACGGCTATGATTGGGGTGTCGAATACTCT
CGTGGGTTTCTGCTTACGGTTCAGGTTGCTCTGTGCGGTGTCGCCGTGTT
CGCCGCGCACATCGGCTTTAAGGCTTCGTCAGCGTTGAGACACCAAGCGG
TTCACTCACAAGCGGGGCACGAGATCCAGGTGCCAATGCAGGCATCGGCG
TATCCAGCCGTTGAGGAGCACTATCCGCAGTCAAGCACACACCCATGAAT
AACCGTGGAAGATCCTGACGAGGTGGTGCACGCCAGAAAGATTGCCCTCG
CGCAGGCGACTCTCGAAACCGCATTCCTCGTATTTTGTCGATCGGGATGG
TGTGTGTGGACATGGATGTTCGCGATGCCGTCGTCCATCATCGTGGCGAG
CTGCTGTAAGCACAGGGTCGCATACGTTGTCTGGGGCAATATAAATATCT
TCGTTTGTTGGTTTCATGCGGTGGCGGCGGCAGAAGCTTTGGGGCGAGAG
GACGGCTATGATTGGGGTGTCGAATACTCTCGTGGGTTTCTGCTTACGGT
TCAGGTTGCTCTGTGCGGTGTCGCCGTGTTCGCCGCGCACATCGGCTTTA
AGGCTTCGTCAGCGTTGAGACACCAAGCGGTTCACTCACAAGCGGGGCAC
GAGATCCAGGTGCCAATGCAGGCATCGGCGTATCCAGCCGTTGAGGAGCA
CTATCCGCAGTCAAGCACACACCCATGA
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