mRNA_F-serratus_M_contig829.19679.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig829.19679.1
Unique NamemRNA_F-serratus_M_contig829.19679.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig829.19679.1 vs. uniprot
Match: A0A6H5JWT3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.260e-10
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 3 
Query: 1389 LPSAFVGQPVGVDQV-GDVWIGDSGATTHMTWNAELMYDTKPPSPQRSRIILGDGSVKKVQFVGKIDLVFHS------RTDHPVTLYDVSFVPGLGFNLFSFHVVQEKHGILLNKT----GAHLLGGRLVFPRRKNGSSLRAT 1784
            +  AF+ QP   + +  + W  DSGA+  +T   + MY+ +   P    I +GD ++ KV  VG +DL FH       + D  VT+ +V FVPG GFNLFS   V  KH ++ + T      HL    L    +++G +L  T
Sbjct:  420 VEKAFLCQPSMPNPICSEQWQADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVMDSNTFHNRAGHLSEPILRLSAKQHGITLTGT 562
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BLAST of mRNA_F-serratus_M_contig829.19679.1 vs. uniprot
Match: A0A6H5JMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.440e-8
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 3 
Query: 1452 DSGATTHMTWNAELMYDTKPPSPQRSRIILGDGSVKKVQFVGKIDLVFHS------RTDHPVTLYDVSFVPGLGFNLFSFHVVQEKHGILLN 1709
            DSGA+  +T   + MY+ +   P    I +GD ++ KV  VG +DL FH       + D  VT+ +V FVPG GFNLFS   V  KH + +N
Sbjct:  321 DSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHAVRIN 412
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BLAST of mRNA_F-serratus_M_contig829.19679.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.970e-8
Identity = 51/156 (32.69%), Postives = 71/156 (45.51%), Query Frame = 3 
Query: 1260 SESDWNFSSGPSQALRAQYVSPGEFQSSDLSGGDLVGSEGGSYLPSAFVGQPVGVDQVGDVWIGDSGATTHMTWNAELMYDTKPPSPQRSRIILGDGSVKKVQFVGKIDLVFHS------RTDHPVTLYDVSFVPGLGFNLFSFHVVQEKHGILLN 1709
            +E    +S G S AL      PG      L G +  G   G Y P  +  +  G          DSGA+  ++   + MY+ +   P    I +GD ++ KV  VG +DL FH       + D  VT+ +V FVPG GFNLFS   V  KH + +N
Sbjct:  290 NEQGAGWSRGHSPALPGPPRGPGSGAGGQLQGRNSGGRGHGGYGP--YPPENRGRQ-------ADSGASAMISNKVDAMYNVRHLGPDEQFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVRIN 436
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BLAST of mRNA_F-serratus_M_contig829.19679.1 vs. uniprot
Match: A0A6H5KH18_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH18_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.930e-7
Identity = 36/96 (37.50%), Postives = 50/96 (52.08%), Query Frame = 3 
Query: 1452 DSGATTHMTWNAELMYDTKPPSPQRSRIILGDGSVKKVQFVGKIDLVFHS------RTDHPVTLYDVSFVPGLGFNLFSFHVVQEKHGILLNKTGA 1721
            DSGA   +T   + MY+ +   P    + +GD +  K+  VG +DL FH       + D  VT+ +V FVPG GFNLFS   V  KH + +N   A
Sbjct:  303 DSGANAMITNKVDAMYNVRHLGPDERFVQIGDSAPIKIAAVGSLDLGFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVFHKHKVRINPNAA 398
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig829.19679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWT3_9PHAE8.260e-1033.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMH6_9PHAE3.440e-840.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQJ6_9PHAE3.970e-832.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KH18_9PHAE2.930e-737.50Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig829contigF-serratus_M_contig829:286262..288105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1845
Cds size879
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932457.122575-UTR-F-serratus_M_contig829:286261..2872261622932457.122575-UTR-F-serratus_M_contig829:286261..287226Fucus serratus maleUTRF-serratus_M_contig829 286262..287226 +
1690964317.8205996-UTR-F-serratus_M_contig829:286261..2872261690964317.8205996-UTR-F-serratus_M_contig829:286261..287226Fucus serratus maleUTRF-serratus_M_contig829 286262..287226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932457.1391273-CDS-F-serratus_M_contig829:287226..2881051622932457.1391273-CDS-F-serratus_M_contig829:287226..288105Fucus serratus maleCDSF-serratus_M_contig829 287227..288105 +
1690964317.8334713-CDS-F-serratus_M_contig829:287226..2881051690964317.8334713-CDS-F-serratus_M_contig829:287226..288105Fucus serratus maleCDSF-serratus_M_contig829 287227..288105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig829.19679.1prot_F-serratus_M_contig829.19679.1Fucus serratus malepolypeptideF-serratus_M_contig829 287227..288105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig829.19679.1

>prot_F-serratus_M_contig829.19679.1 ID=prot_F-serratus_M_contig829.19679.1|Name=mRNA_F-serratus_M_contig829.19679.1|organism=Fucus serratus male|type=polypeptide|length=293bp
MCPQCGKEERFPADCVFTTTMPAPRPRHQSYSGRHSGAHVAQHDTYPTPP
WTSHDGEGYSTSSYGPPPYDSDAHATPMPSPPGSIGPTSRTPPPSVPPSE
SDWNFSSGPSQALRAQYVSPGEFQSSDLSGGDLVGSEGGSYLPSAFVGQP
VGVDQVGDVWIGDSGATTHMTWNAELMYDTKPPSPQRSRIILGDGSVKKV
QFVGKIDLVFHSRTDHPVTLYDVSFVPGLGFNLFSFHVVQEKHGILLNKT
GAHLLGGRLVFPRRKNGSSLRATRVIQGTHVNASTALASFSNP
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mRNA from alignment at F-serratus_M_contig829:286262..288105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig829.19679.1 ID=mRNA_F-serratus_M_contig829.19679.1|Name=mRNA_F-serratus_M_contig829.19679.1|organism=Fucus serratus male|type=mRNA|length=1844bp|location=Sequence derived from alignment at F-serratus_M_contig829:286262..288105+ (Fucus serratus male)
GTTTCGAAACATGGGCTTGCCTTGCCCGATGCGATTACGCTCTGAACTCT
GAGATTGCTGTAAGAACGTCCGGAGTGTCCTACGATAACCTCGTGAGATT
ATATAATTCCGCGCTAACGCACGACTCTCTGCAGGTTTGGAATGCAATGT
TAAAAGGGCTAGAAAAGGAAAACGACATCATGAAGACGGCGATAGAGATC
GGTTCCCCCTCACTAGCATGGCGTGCCCTCAAAAATATGGTAGACGAGTC
TGAGGAAGTCGCGTATGATAGGGCTAAAAGAGAATTCGAAACACTGGAGA
TGGGAACGGATGAGACGGTGTCCGATTATTTTGCTCGTGTAAACATTGCA
ATGACAAAGGTCCAGAGAAACAATGTCGTAATGCCTGAACGAGAAATCAA
GAGTATAATAATGGGTAGCTTGATGTCCCGTTTCCCGAGTGAAATGTCTG
TGTATGCGATGCAGGGGGATTTTGTATTGAAGGACCTGGAAACTGGGCTG
GCACGTGCGGAGAAGCTCCAGTCAGACCAGAAGAGAAGGAGCACCCCATC
CCAAGCGTTAGCCGCTGCTCATATGGGCGGCGGTCAAATCGGGAGTGGAG
GTGGAGTTCGTGGACGAGGTTGGCACGGCAGGCACTCAGGCGGGCGCCAC
GGCGATGGTCGCGGCCGAAATCCGCAGCAGGGGCATCAGTGGCAGATGTA
CCCCGATCAGCAGCATCAGTCACCACCGTCACCAGCGTGGCAGTAACACG
ATCAGCACTTGCACCAACCGCGACCCCCGCAGCCGCGACATCATCAATAT
CCCTGGAGCAGCTGGGAGACACCTCACCAAGGCCAGCACCATCCGCAAAC
GTGGCAGCAGCATCCATCACCACCCCACCCCTGGAGCAGCTGGGAAAGGC
CTCCACAACGGCGAGGAAGGGGACAACAACAGCGGAGATCGCAGCAACCA
TATCCGCAGCGCGCCATGTGCCCACAGTGCGGGAAGGAGGAGCGCTTCCC
CGCGGACTGCGTCTTCACCACGACTATGCCCGCACCACGGCCACGGCATC
AGTCTTATTCAGGACGGCACTCAGGAGCCCATGTCGCGCAGCACGACACT
TATCCCACTCCCCCATGGACATCACACGACGGTGAGGGATATTCGACATC
CAGCTACGGGCCTCCGCCGTACGACAGCGACGCTCATGCCACGCCGATGC
CATCGCCGCCAGGATCTATCGGACCGACTTCACGGACTCCTCCTCCATCG
GTGCCTCCCTCGGAGTCTGACTGGAACTTCTCTTCCGGGCCATCCCAGGC
GCTACGGGCACAATACGTGTCTCCAGGCGAGTTCCAGAGTTCAGATTTGT
CTGGTGGGGATTTGGTAGGTAGTGAGGGCGGAAGTTACCTTCCTTCGGCA
TTTGTTGGACAGCCCGTAGGCGTAGACCAAGTTGGAGATGTCTGGATAGG
TGACAGTGGTGCAACTACGCATATGACTTGGAACGCTGAACTGATGTATG
ACACCAAACCCCCATCCCCCCAAAGGTCCAGGATTATTTTGGGAGACGGT
TCGGTTAAGAAGGTGCAATTTGTGGGGAAAATTGATTTGGTATTCCACAG
CAGGACTGATCACCCGGTTACCCTCTACGACGTATCTTTTGTGCCTGGTT
TGGGTTTCAACCTGTTTTCGTTCCATGTTGTTCAAGAGAAACATGGCATT
CTTTTGAACAAAACAGGGGCCCACTTGCTGGGTGGTCGGCTAGTCTTCCC
TCGTAGGAAAAATGGGTCGTCCCTGCGTGCCACTAGGGTAATACAGGGAA
CGCATGTAAACGCGAGCACCGCGCTCGCATCCTTCTCAAACCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig829:286262..288105+

>mRNA_F-serratus_M_contig829.19679.1 ID=mRNA_F-serratus_M_contig829.19679.1|Name=mRNA_F-serratus_M_contig829.19679.1|organism=Fucus serratus male|type=CDS|length=1758bp|location=Sequence derived from alignment at F-serratus_M_contig829:286262..288105+ (Fucus serratus male)
ATGTGCCCACAGTGCGGGAAGGAGGAGCGCTTCCCCGCGGACTGCGTCTT
CACCACGACTATGCCCGCACCACGGCCACGGCATCAGTCTTATTCAGGAC
GGCACTCAGGAGCCCATGTCGCGCAGCACGACACTTATCCCACTCCCCCA
TGGACATCACACGACGGTGAGGGATATTCGACATCCAGCTACGGGCCTCC
GCCGTACGACAGCGACGCTCATGCCACGCCGATGCCATCGCCGCCAGGAT
CTATCGGACCGACTTCACGGACTCCTCCTCCATCGGTGCCTCCCTCGGAG
TCTGACTGGAACTTCTCTTCCGGGCCATCCCAGGCGCTACGGGCACAATA
CGTGTCTCCAGGCGAGTTCCAGAGTTCAGATTTGTCTGGTGGGGATTTGG
TAGGTAGTGAGGGCGGAAGTTACCTTCCTTCGGCATTTGTTGGACAGCCC
GTAGGCGTAGACCAAGTTGGAGATGTCTGGATAGGTGACAGTGGTGCAAC
TACGCATATGACTTGGAACGCTGAACTGATGTATGACACCAAACCCCCAT
CCCCCCAAAGGTCCAGGATTATTTTGGGAGACGGTTCGGTTAAGAAGGTG
CAATTTGTGGGGAAAATTGATTTGGTATTCCACAGCAGGACTGATCACCC
GGTTACCCTCTACGACGTATCTTTTGTGCCTGGTTTGGGTTTCAACCTGT
TTTCGTTCCATGTTGTTCAAGAGAAACATGGCATTCTTTTGAACAAAACA
GGGGCCCACTTGCTGGGTGGTCGGCTAGTCTTCCCTCGTAGGAAAAATGG
GTCGTCCCTGCGTGCCACTAGGGTAATACAGGGAACGCATGTAAACGCGA
GCACCGCGCTCGCATCCTTCTCAAACCCCATGTGCCCACAGTGCGGGAAG
GAGGAGCGCTTCCCCGCGGACTGCGTCTTCACCACGACTATGCCCGCACC
ACGGCCACGGCATCAGTCTTATTCAGGACGGCACTCAGGAGCCCATGTCG
CGCAGCACGACACTTATCCCACTCCCCCATGGACATCACACGACGGTGAG
GGATATTCGACATCCAGCTACGGGCCTCCGCCGTACGACAGCGACGCTCA
TGCCACGCCGATGCCATCGCCGCCAGGATCTATCGGACCGACTTCACGGA
CTCCTCCTCCATCGGTGCCTCCCTCGGAGTCTGACTGGAACTTCTCTTCC
GGGCCATCCCAGGCGCTACGGGCACAATACGTGTCTCCAGGCGAGTTCCA
GAGTTCAGATTTGTCTGGTGGGGATTTGGTAGGTAGTGAGGGCGGAAGTT
ACCTTCCTTCGGCATTTGTTGGACAGCCCGTAGGCGTAGACCAAGTTGGA
GATGTCTGGATAGGTGACAGTGGTGCAACTACGCATATGACTTGGAACGC
TGAACTGATGTATGACACCAAACCCCCATCCCCCCAAAGGTCCAGGATTA
TTTTGGGAGACGGTTCGGTTAAGAAGGTGCAATTTGTGGGGAAAATTGAT
TTGGTATTCCACAGCAGGACTGATCACCCGGTTACCCTCTACGACGTATC
TTTTGTGCCTGGTTTGGGTTTCAACCTGTTTTCGTTCCATGTTGTTCAAG
AGAAACATGGCATTCTTTTGAACAAAACAGGGGCCCACTTGCTGGGTGGT
CGGCTAGTCTTCCCTCGTAGGAAAAATGGGTCGTCCCTGCGTGCCACTAG
GGTAATACAGGGAACGCATGTAAACGCGAGCACCGCGCTCGCATCCTTCT
CAAACCCC
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