mRNA_F-serratus_M_contig828.19675.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig828.19675.1
Unique NamemRNA_F-serratus_M_contig828.19675.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 2.550e-82
Identity = 174/493 (35.29%), Postives = 268/493 (54.36%), Query Frame = 1
Query:   31 WRKAEETEMLGMVKNCVYDQV-AWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIP-------EKFQEFPGAV--------------------------KADPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            W +A   E  G +    +  V   P+ +  + +K  +     ++ K++ +K RLVA+GF Q+ +V Y   +SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+ +++P        K  +   A+                          KADPCVFRK+VD    M++V+++DDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++IPA  GA    K ++ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D+ + A  + RRSVSG         +S  S+ Q + +  ++EA+Y+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHID        H +R    +  + V +V + +QHADLLTK L
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRY-----HFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 8.550e-82
Identity = 174/493 (35.29%), Postives = 268/493 (54.36%), Query Frame = 1
Query:   31 WRKAEETEMLGMVKNCVYDQV-AWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIP-------EKFQEFPGAV--------------------------KADPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            W +A   E  G +    +  V   P+ +  + +K  +     ++ K++ +K RLVA+GF Q+ +V Y   +SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+ +++P        K  +   A+                          KADPCVFRK+VD    M++V+++DDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++IPA  GA    K ++ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D+ + A  + RRSVSG         +S  S+ Q + +  ++EA+Y+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHID        H +R    +  + V +V + +QHADLLTK L
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRY-----HFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 8.930e-82
Identity = 174/493 (35.29%), Postives = 268/493 (54.36%), Query Frame = 1
Query:   31 WRKAEETEMLGMVKNCVYDQV-AWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIP-------EKFQEFPGAV--------------------------KADPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            W +A   E  G +    +  V   P+ +  + +K  +     ++ K++ +K RLVA+GF Q+ +V Y   +SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+ +++P        K  +   A+                          KADPCVFRK+VD    M++V+++DDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++IPA  GA    K ++ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D+ + A  + RRSVSG         +S  S+ Q + +  ++EA+Y+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHID        H +R    +  + V +V + +QHADLLTK L
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRY-----HFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 9.200e-82
Identity = 174/493 (35.29%), Postives = 268/493 (54.36%), Query Frame = 1
Query:   31 WRKAEETEMLGMVKNCVYDQV-AWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIP-------EKFQEFPGAV--------------------------KADPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            W +A   E  G +    +  V   P+ +  + +K  +     ++ K++ +K RLVA+GF Q+ +V Y   +SP PS+ASI+++LA A  K   L H+D +QA+  A +DEE+ +++P        K  +   A+                          KADPCVFRK+VD    M++V+++DDIL    D+   +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++IPA  GA    K ++ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D+ + A  + RRSVSG         +S  S+ Q + +  ++EA+Y+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHID        H +R    +  + V +V + +QHADLLTK L
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRY-----HFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 272 bits (695), Expect = 2.970e-81
Identity = 172/513 (33.53%), Postives = 271/513 (52.83%), Query Frame = 1
Query:    1 QAMESHEWDEWRKAEETEMLGMVKNCVYDQVAWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAVKA------------------------------------------DPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            +A   H+ DEW+KA  +E+  ++ N  +  V  P  +  IG + ++     +  +V +YK RLVA+G+ Q   + Y E  SP     S+R +LA   A+  E+   D + AFL  +++EEI +E+PE  +E     +A                                          DPCV+ +  +GE E +V +++DD+L  ++ +A +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   G    +K DEPQ  E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G   +AY+D+D+    D RRSVSG +LM     + W S  Q   A  ++EA+Y+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID        H +R+   +  V + YV +++Q A  +TK L
Sbjct:   71 EATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRY-----HFIREKVVSSEVELEYVDTKNQLAYFMTKGL 574          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 270 bits (689), Expect = 4.910e-80
Identity = 171/505 (33.86%), Postives = 265/505 (52.48%), Query Frame = 1
Query:   25 DEWRKAEETEMLGMVKNCVYDQVAWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAVKA------------------------------------------DPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            DEW KA  +E+  +V N  +  V  P  +  IG + ++     +  +  +YK RLVA+G+ Q  D+ Y E  SP     SIR +L   +A+  E+   D + AFL   ++EEI +E+PE  +E     +A                                          DPCV+ +  +GE E +V +++D++L  ++ +A +    A + +KF++KD+G A + +G  I  N + R L   Q  Y ES++K F  +  K    P   G    +K DEPQ  E+K +MK  PYR  VG+LM+ A  TRPD++ AV  ++RF ENPG  H  + +K  +YLL TK+ GI Y GQ  G  ++AY+D+D+    D RRSVSG +LM     + W S  Q   A  ++EA+Y+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID        H +R+      V + YV +++Q AD +TK L
Sbjct:  112 DEWMKAIASELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATEIYEDNQGAMALAKNVGYQARTKHIDIRY-----HFIREKVVGNEVELEYVDTKNQLADFMTKGL 607          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.970e-79
Identity = 171/505 (33.86%), Postives = 269/505 (53.27%), Query Frame = 1
Query:   25 DEWRKAEETEMLGMVKNCVYDQVAWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAVKA------------------------------------------DPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            DEW+KA  +E+  ++ N  +  V  P  +  IG + ++     +  +V +YK RLVA+G+ Q   + Y E  SP     SIR +LA  +A+  E+   D + AFL   ++EEI +E+ E  +E     +A                                          DPCV+ +  +GE E +V +++DD+L  ++ +A +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   G    +K DEPQ  E+K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  ++AY+D+D+    D RRSVSG +LM     + W S  Q   A  ++EA+Y+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N      TKHID        H +RD + +  V++ YV +++Q AD +TK L
Sbjct:  144 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRY-----HFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 639          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 273 bits (699), Expect = 4.190e-79
Identity = 172/505 (34.06%), Postives = 271/505 (53.66%), Query Frame = 1
Query:   25 DEWRKAEETEMLGMVKNCVYDQVAWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAVKA------------------------------------------DPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            DEW+KA  +E+  ++ N  +  V  P  +  IG + ++     +  +V +YK RLVA+G+ Q   + Y E  SP     SIR +L   +A+  E+   D + AFL   ++ EI +E+PE+ +E     +A                                          DPCV+ +  +GE E +V +++DD+L  ++  A +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   G    +K DEPQ  E+K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  ++AY+D+D+    D RRSVSG +LM  +  + W S  Q   A  ++EA+Y+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID        H VR+ + +  V++ YV +++Q AD +TK L
Sbjct:  410 DEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRY-----HFVREKAVSNEVKLEYVDTKNQLADFMTKGL 905          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 4.830e-79
Identity = 155/426 (36.38%), Postives = 234/426 (54.93%), Query Frame = 1
Query:  232 EKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAV---------------------------------KADPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYG-GQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            E  +PT + +S+R+L A A  ++  LRHFD +QAF+++D+DE++ + +PE      G +                                  AD CVFR + +G   + +VVH+DDI +  +++   D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   +IP   G    S+ D      + +E+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T + GIT+  G   GL M+ + D+D+ +    RRSVSG ++M   G ISW SR Q      T+EA+YV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHID        H +R+    + + + +V S  QHAD LTK L
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRH-----HFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 268 bits (685), Expect = 3.060e-77
Identity = 171/505 (33.86%), Postives = 269/505 (53.27%), Query Frame = 1
Query:   25 DEWRKAEETEMLGMVKNCVYDQVAWPKDKLVIGTKMLYKRNIGQDSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAVKA------------------------------------------DPCVFRKVVDGEAEMVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVK--KEAKIPAASGAPTFSKVDEPQNPEEKKEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKE*GITYGGQGCGLCMDAYTDSDFGACLDTRRSVSGAVLMFVKGAISWHSRMQGVTAAGTSEAKYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDXXXXXXXXHLVRDASDAQRVRVAYVRSEDQHADLLTKPL 1407
            DEW+KA  +E+  ++ N  +  V  P  +  IG + ++     +  +V +YK RLVA+G+ Q   ++Y E  SP     SIR +LA  +A+  E+   D + AFL   ++EEI +E+ E  +E     +A                                          DPCV+ +  +GE E +V +++DD+L  ++ +A +    A + +KF++KDMG A + +G  I  N + R L   Q  Y ES++K+   +  K    P   G    +K DEPQ  E+K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  ++AY+D+D+    D RRSVSG +LM     + W S  Q   A  ++EA+Y+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N      TKHID        H +RD + +  V++ YV +++Q AD +TK L
Sbjct:  388 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRY-----HFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 883          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig828.19675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE2.550e-8235.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.550e-8235.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE8.930e-8235.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE9.200e-8235.29Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6A3Q908_9STRA2.970e-8133.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA4.910e-8033.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA1.970e-7933.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3YGI7_9STRA4.190e-7934.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JLN0_9PHAE4.830e-7936.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0QQ26_9STRA3.060e-7733.86Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig828contigF-serratus_M_contig828:72051..73556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score170.6
Seed ortholog evalue1.1e-39
Seed eggNOG ortholog65672.G4TWW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size1407
Cds size933
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig828.19675.1prot_F-serratus_M_contig828.19675.1Fucus serratus malepolypeptideF-serratus_M_contig828 72057..73088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932454.5876145-UTR-F-serratus_M_contig828:72050..720561622932454.5876145-UTR-F-serratus_M_contig828:72050..72056Fucus serratus maleUTRF-serratus_M_contig828 72051..72056 +
1690964316.6738276-UTR-F-serratus_M_contig828:72050..720561690964316.6738276-UTR-F-serratus_M_contig828:72050..72056Fucus serratus maleUTRF-serratus_M_contig828 72051..72056 +
1622932454.6438851-UTR-F-serratus_M_contig828:73088..735561622932454.6438851-UTR-F-serratus_M_contig828:73088..73556Fucus serratus maleUTRF-serratus_M_contig828 73089..73556 +
1690964316.7048628-UTR-F-serratus_M_contig828:73088..735561690964316.7048628-UTR-F-serratus_M_contig828:73088..73556Fucus serratus maleUTRF-serratus_M_contig828 73089..73556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932454.6070106-CDS-F-serratus_M_contig828:72056..724551622932454.6070106-CDS-F-serratus_M_contig828:72056..72455Fucus serratus maleCDSF-serratus_M_contig828 72057..72455 +
1690964316.6846073-CDS-F-serratus_M_contig828:72056..724551690964316.6846073-CDS-F-serratus_M_contig828:72056..72455Fucus serratus maleCDSF-serratus_M_contig828 72057..72455 +
1622932454.625551-CDS-F-serratus_M_contig828:72554..730881622932454.625551-CDS-F-serratus_M_contig828:72554..73088Fucus serratus maleCDSF-serratus_M_contig828 72555..73088 +
1690964316.6933234-CDS-F-serratus_M_contig828:72554..730881690964316.6933234-CDS-F-serratus_M_contig828:72554..73088Fucus serratus maleCDSF-serratus_M_contig828 72555..73088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig828.19675.1

>prot_F-serratus_M_contig828.19675.1 ID=prot_F-serratus_M_contig828.19675.1|Name=mRNA_F-serratus_M_contig828.19675.1|organism=Fucus serratus male|type=polypeptide|length=311bp
MESHEWDEWRKAEETEMLGMVKNCVYDQVAWPKDKLVIGTKMLYKRNIGQ
DSKVEKYKCRLVAQGFWQVEDVHYTEKNSPTPSAASIRMLLATAAAKDGE
LRHFDAEQAFLKADIDEEICIEIPEKFQEFPGAVKADPCVFRKVVDGEAE
MVVVVHLDDILAHAKDQATMDRFAAELGQKFKLKDMGDAEYYMGCHITRN
RKTRELKFDQHLYVESMVKRFDVKKEAKIPAASGAPTFSKVDEPQNPEEK
KEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMK
IFQYLLHTKE*
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mRNA from alignment at F-serratus_M_contig828:72051..73556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig828.19675.1 ID=mRNA_F-serratus_M_contig828.19675.1|Name=mRNA_F-serratus_M_contig828.19675.1|organism=Fucus serratus male|type=mRNA|length=1506bp|location=Sequence derived from alignment at F-serratus_M_contig828:72051..73556+ (Fucus serratus male)
CAGGCGATGGAATCGCATGAATGGGACGAATGGCGAAAGGCAGAAGAGAC TGAGATGCTTGGAATGGTTAAAAACTGCGTGTATGATCAGGTGGCTTGGC CGAAGGATAAGCTTGTGATCGGCACAAAAATGTTGTACAAGCGAAACATC GGGCAGGACAGCAAGGTCGAGAAGTATAAGTGTCGACTTGTCGCTCAAGG GTTCTGGCAGGTGGAAGATGTGCACTACACGGAAAAGAACTCACCCACGC CATCAGCCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGAT GGGGAGCTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATAT TGACGAGGAGATATGCATAGAAATCCCCGAGAAGTTCCAGGAGTTTCCGG GGGCAGTGGGACGGCTTAATAAGGCCTTTTACGGACTCGTGCAGGAGGGG AGGTGCTGGAATAATAAGATCTGTGACGACATGACGGCGATTGGATTCGA GCAGGTAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGG CGGAGATGGTGGTGGTCGTGCACCTAGACGACATCCTTGCCCACGCAAAA GACCAAGCGACGATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTAA GTTGAAGGACATGGGGGACGCTGAATACTACATGGGTTGTCACATCACCA GGAACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTATACGTGGAG TCAATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAAGATACCGGCTGC GTCGGGGGCACCGACGTTCTCAAAGGTGGATGAGCCGCAAAACCCAGAGG AGAAGAAAGAGATGAAGATGTTCCCGTACCGAGAAGCAGTGGGGGCGCTC ATGTGGACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGC TGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGAAGGCAGTGA TGAAGATCTTCCAGTATCTACTTCACACGAAAGAATGAGGAATTACGTAC GGTGGACAGGGCTGTGGACTCTGCATGGACGCATATACGGATTCAGATTT CGGAGCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTTGATGT TTGTCAAGGGAGCGATCAGTTGGCACTCGAGGATGCAAGGAGTAACAGCA GCAGGTACCTCGGAGGCAAAGTACGTTGCCTTATCGGAGGTAGTAAAGGA TGTACTATTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCGATGAGGG TCGGTGCGGTAAATGTATTTGAAGATAATGAGGGGGCCATCAAGCTGGCC ACAAACAAGCATGCTAGCCGTAGGACGAAGCACATTGATACGAAGCACAT TGATGCGAAGCATCATCTAGTAAGGGACGCGTCTGACGCGCAAAGGGTAA GAGTAGCGTACGTAAGGTCAGAAGATCAACACGCGGATTTGCTCACGAAA CCGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig828:72051..73556+

>mRNA_F-serratus_M_contig828.19675.1 ID=mRNA_F-serratus_M_contig828.19675.1|Name=mRNA_F-serratus_M_contig828.19675.1|organism=Fucus serratus male|type=CDS|length=1866bp|location=Sequence derived from alignment at F-serratus_M_contig828:72051..73556+ (Fucus serratus male)
ATGGAATCGCATGAATGGGACGAATGGCGAAAGGCAGAAGAGACTGAGAT
GCTTGGAATGGTTAAAAACTGCGTGTATGATCAGGTGGCTTGGCCGAAGG
ATAAGCTTGTGATCGGCACAAAAATGTTGTACAAGCGAAACATCGGGCAG
GACAGCAAGGTCGAGAAGTATAAGTGTCGACTTGTCGCTCAAGGGTTCTG
GCAGGTGGAAGATGTGCACTACACGGAAAAGAACTCACCCACGCCATCAG
CCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGGGAG
CTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGA
GGAGATATGCATAGAAATCCCCGAGAAGTTCCAGGAGTTTCCGGGGGCAA
TGGAATCGCATGAATGGGACGAATGGCGAAAGGCAGAAGAGACTGAGATG
CTTGGAATGGTTAAAAACTGCGTGTATGATCAGGTGGCTTGGCCGAAGGA
TAAGCTTGTGATCGGCACAAAAATGTTGTACAAGCGAAACATCGGGCAGG
ACAGCAAGGTCGAGAAGTATAAGTGTCGACTTGTCGCTCAAGGGTTCTGG
CAGGTGGAAGATGTGCACTACACGGAAAAGAACTCACCCACGCCATCAGC
CGCGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGGGAGC
TGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGAG
GAGATATGCATAGAAATCCCCGAGAAGTTCCAGGAGTTTCCGGGGGCAGT
AAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGA
TGGTGGTGGTCGTGCACCTAGACGACATCCTTGCCCACGCAAAAGACCAA
GCGACGATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTAAGTTGAA
GGACATGGGGGACGCTGAATACTACATGGGTTGTCACATCACCAGGAACC
GCAAGACGCGTGAGTTGAAGTTCGACCAACACCTATACGTGGAGTCAATG
GTAAAGAGATTCGATGTCAAGAAGGAAGCCAAGATACCGGCTGCGTCGGG
GGCACCGACGTTCTCAAAGGTGGATGAGCCGCAAAACCCAGAGGAGAAGA
AAGAGATGAAGATGTTCCCGTACCGAGAAGCAGTGGGGGCGCTCATGTGG
ACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGCTGTGGC
CAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGAAGGCAGTGATGAAGA
TCTTCCAGTATCTACTTCACACGAAAGAATGAGTAAAGGCGGACCCGTGC
GTGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGGTCGTGCA
CCTAGACGACATCCTTGCCCACGCAAAAGACCAAGCGACGATGGATAGAT
TCGCGGCCGAGCTTGGGCAGAAGTTTAAGTTGAAGGACATGGGGGACGCT
GAATACTACATGGGTTGTCACATCACCAGGAACCGCAAGACGCGTGAGTT
GAAGTTCGACCAACACCTATACGTGGAGTCAATGGTAAAGAGATTCGATG
TCAAGAAGGAAGCCAAGATACCGGCTGCGTCGGGGGCACCGACGTTCTCA
AAGGTGGATGAGCCGCAAAACCCAGAGGAGAAGAAAGAGATGAAGATGTT
CCCGTACCGAGAAGCAGTGGGGGCGCTCATGTGGACGGCGACGATGACAC
GGCCGGATATCGCGTGCGCCGTACGCGCTGTGGCCAGGTTCTGCGAAAAC
CCTGGGCCGGCACACAAGAAGGCAGTGATGAAGATCTTCCAGTATCTACT
TCACACGAAAGAATGA
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