mRNA_F-serratus_M_contig828.19676.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig828.19676.1
Unique NamemRNA_F-serratus_M_contig828.19676.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig828.19676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig828contigF-serratus_M_contig828:357039..357430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932454.5332747-UTR-F-serratus_M_contig828:357038..3571061622932454.5332747-UTR-F-serratus_M_contig828:357038..357106Fucus serratus maleUTRF-serratus_M_contig828 357039..357106 +
1690964316.6550372-UTR-F-serratus_M_contig828:357038..3571061690964316.6550372-UTR-F-serratus_M_contig828:357038..357106Fucus serratus maleUTRF-serratus_M_contig828 357039..357106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932454.5457876-CDS-F-serratus_M_contig828:357106..3574301622932454.5457876-CDS-F-serratus_M_contig828:357106..357430Fucus serratus maleCDSF-serratus_M_contig828 357107..357430 +
1690964316.6642125-CDS-F-serratus_M_contig828:357106..3574301690964316.6642125-CDS-F-serratus_M_contig828:357106..357430Fucus serratus maleCDSF-serratus_M_contig828 357107..357430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig828.19676.1prot_F-serratus_M_contig828.19676.1Fucus serratus malepolypeptideF-serratus_M_contig828 357107..357430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig828.19676.1

>prot_F-serratus_M_contig828.19676.1 ID=prot_F-serratus_M_contig828.19676.1|Name=mRNA_F-serratus_M_contig828.19676.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MTTSLRFQCLLLCWVIEPILYSNKISLLPTKDLSVSYFKETKMSPLITTH
AQQRHAILRILVLELLVKTTQISSTLLPERILKKLFTRASIEHSSSLRND
GELRTHEM
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mRNA from alignment at F-serratus_M_contig828:357039..357430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig828.19676.1 ID=mRNA_F-serratus_M_contig828.19676.1|Name=mRNA_F-serratus_M_contig828.19676.1|organism=Fucus serratus male|type=mRNA|length=392bp|location=Sequence derived from alignment at F-serratus_M_contig828:357039..357430+ (Fucus serratus male)
ATACTGCTATCAACTCCCACATAGTTAGGACAGGAGGAGTTGTGTATTGA
CCAATCAACATCCCCCCAATGACGACGTCCTTACGTTTTCAATGTTTACT
TCTCTGCTGGGTTATTGAACCCATCTTATATTCAAATAAAATATCCCTCT
TACCTACGAAGGATCTGAGCGTTTCTTACTTCAAAGAAACCAAAATGTCT
cCCTTAATAACCACACATGCTCAACAGAGGCATGCTATACTTAGGATATT
GGTGCTCGAATTACTTGTGAAAACTACTCAAATTTCCAGTACATTGTTAC
CAGAAAGAATTTTAAAAAAACTTTTCACGAGGGCGAGCATTGAACACTCA
AGTTCATTAAGAAACGACGGTGAATTACGAACACATGAAATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig828:357039..357430+

>mRNA_F-serratus_M_contig828.19676.1 ID=mRNA_F-serratus_M_contig828.19676.1|Name=mRNA_F-serratus_M_contig828.19676.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig828:357039..357430+ (Fucus serratus male)
ATGACGACGTCCTTACGTTTTCAATGTTTACTTCTCTGCTGGGTTATTGA
ACCCATCTTATATTCAAATAAAATATCCCTCTTACCTACGAAGGATCTGA
GCGTTTCTTACTTCAAAGAAACCAAAATGTCTcCCTTAATAACCACACAT
GCTCAACAGAGGCATGCTATACTTAGGATATTGGTGCTCGAATTACTTGT
GAAAACTACTCAAATTTCCAGTACATTGTTACCAGAAAGAATTTTAAAAA
AACTTTTCACGAGGGCGAGCATTGAACACTCAAGTTCATTAAGAAACGAC
GGTGAATTACGAACACATGAAATGATGACGACGTCCTTACGTTTTCAATG
TTTACTTCTCTGCTGGGTTATTGAACCCATCTTATATTCAAATAAAATAT
CCCTCTTACCTACGAAGGATCTGAGCGTTTCTTACTTCAAAGAAACCAAA
ATGTCTcCCTTAATAACCACACATGCTCAACAGAGGCATGCTATACTTAG
GATATTGGTGCTCGAATTACTTGTGAAAACTACTCAAATTTCCAGTACAT
TGTTACCAGAAAGAATTTTAAAAAAACTTTTCACGAGGGCGAGCATTGAA
CACTCAAGTTCATTAAGAAACGACGGTGAATTACGAACACATGAAATG
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