mRNA_F-serratus_M_contig826.19659.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig826.19659.1
Unique NamemRNA_F-serratus_M_contig826.19659.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.160e-34
Identity = 79/133 (59.40%), Postives = 95/133 (71.43%), Query Frame = -1
Query:   37 KELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAEKRNEAPEVQAL-KRARVEPSRSS-TPASVFSSFGR 429
            KEL+KAL+ RL+GRVWDD+SADPSPFRD AV+LTPPFNTG YL++LRLS AD E++  GK+ +APT D E   KL G W  +K RA +AARE   R+E  ++   VQ L KR R E S SS T  S FS FGR
Sbjct:   16 KELSKALVERLFGRVWDDDSADPSPFRDAAVLLTPPFNTGKYLEALRLSAADAEYLSIGKKGLAPTMDSEVTAKLDGCWADIKRRAWEAARERNRRSESLDDG--VQPLHKRFRGESSTSSATRKSRFSLFGR 146          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.410e-23
Identity = 54/136 (39.71%), Postives = 89/136 (65.44%), Query Frame = -1
Query:   37 KELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAEKRNEAPEVQALKRARVE---PSR--SSTPASVFSSFGR 429
            +EL +AL++R YGRVWD+++ DPS F D+A +LTPPF+ G YL +++L+V + +++P G   +APT+DE+ +EKL G W  +++RA+ A ++ + +A   ++       KRAR     PSR  +      F++FGR
Sbjct:   16 QELCRALVTRFYGRVWDESTLDPSIFADVACLLTPPFSEGNYLSAMKLTVEEGDYLPAGSSVIAPTSDEDVREKLDGAWAEIQKRAVTAVKKAQRQAAGDSDGGGAGPFKRARTNGAGPSRRKNENQDDTFAAFGR 151          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.540e-22
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = -1
Query:   37 ELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAEKRNEAPEVQALKRARVE---PSRSSTPASVFSSFGR 426
            EL +AL+SR YGRVWDD+  DPS F D A +LTPPF+ G YL +++L+  + E++  G   +APT+DE+ +EKL GIW  + +RA+ A +    RA        +   KRAR     PSR       FS FGR
Sbjct:  309 ELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWVEINKRAVTAVKTAHNRAAGEGGGQGLDPFKRARTSGAAPSRRKNHEDDFSMFGR 441          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.870e-22
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = -1
Query:   37 ELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAEKRNEAPEVQALKRARVE---PSRSSTPASVFSSFGR 426
            EL +AL+SR YGRVWDD+  DPS F D A +LTPPF+ G Y  +++L+  + E++  G   +APT+DE+ +EKL GIW  +K+RAI A +  + RA            KRAR     PSR     + FS FGR
Sbjct:  438 ELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYPSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWAEIKKRAITAVKTAQNRAAGEGGGQGSDPFKRARTSGAAPSRRKNYENDFSMFGR 570          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-19
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = -1
Query:  136 ELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAE 426
            +L +AL+SRLYGRVWD N+ DPS F D + +LTPPF+ G +L +++L+  +  ++P G   +APT+ EE KEKL G+W  +K+ A+KA +  +  AE
Sbjct:  278 KLGRALVSRLYGRVWDHNTLDPSFFCDASCLLTPPFSEGHHLSAMKLTAEEHAYLPAGSVVVAPTSYEEVKEKLDGVWTKIKQGAVKAVKTAQSEAE 374          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.350e-19
Identity = 54/132 (40.91%), Postives = 77/132 (58.33%), Query Frame = -1
Query:   40 ELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAEKRNEAPEVQALKRARVE---PSRSSTPASVFSSFG 426
            +L +AL+SR YG VWDD+  DPS F D A +LTPPF+ G YL +++L+  + +++      +APT+DE+ +EKL GIW  +K+RA+ A + E+ R             KRAR     PSR       FS FG
Sbjct:  318 KLCRALVSRFYGHVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTAVKTEQNRVAGEGGGQGSDPFKRARTSGAVPSRRKNYEDDFSMFG 449          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.220e-18
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  139 ELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRA 426
            E+ +AL+SR YGRVWD+N+ DP  F   A +LTPPF+ GL++ +++L+  D E++P+     APT DEE   KL   W+ +KERA++A ++E+  A
Sbjct:  562 EMRRALVSRFYGRVWDENTLDPPFFCHAACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEAVKKEQAAA 657          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 9.220e-17
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = -1
Query:  139 LNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRA 423
            L KAL+ +LY R+WD+ SADPSPFR+ +V+LTP +    +L    L+  D +H+  G+ ++APT D++ + KL   W  +++RA  AAR+E  +A
Sbjct:  555 LGKALVEKLYARLWDEESADPSPFRNASVLLTPSYKDSKFLDGHALTAGDAQHLGEGRAHLAPTLDDDVQSKLDASWADIRKRASDAARKEHSKA 649          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.660e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  157 LNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAR 423
            L K L+ +LY RVWD +SADPSPFR+ +V+LTP +    +LQ+  L+ AD +H+   K ++APT D E  +KL   W  +K RA +AAR
Sbjct:  334 LTKTLVEKLYRRVWDQDSADPSPFRNASVLLTPSYKDTNFLQAHALTAADSQHLDQRKAHLAPTIDTEVDQKLNDCWADIKARASEAAR 422          
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.550e-15
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = -1
Query:   25 KELNKALLSRLYGRVWDDNSADPSPFRDLAVVLTPPFNTGLYLQSLRLSVADKEHMPTGKEYMAPTTDEEEKEKLAGIWRVVKERAIKAAREEKLRAEKRNEAPEVQALKRARVEPSRSS---TPASVFSSFGRRAAV 429
            +EL +AL+SRLY RVW++ S +PS F D A +LTPPF+ G ++ ++RL+  D  ++P     +APT D E   KL   W  +++RA+++ + E+ RA   +        KRA     RS+   T    F+  GR AAV
Sbjct:  239 EELCRALMSRLYERVWNEQSPNPSFFCDAACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVESVKTEQDRAGGSDAGGGGGPFKRAHTSGGRSARNPTDPDEFTDSGRTAAV 376          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig826.19659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JZQ5_9PHAE8.160e-3459.40Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBZ2_9PHAE3.410e-2339.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZ66_9PHAE4.540e-2243.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE6.870e-2244.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE6_9PHAE1.070e-1946.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB08_9PHAE3.350e-1940.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE1.220e-1844.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L1G0_9PHAE9.220e-1742.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE1.660e-1647.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE2.550e-1537.68Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig826contigF-serratus_M_contig826:90405..90833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932451.0937245-CDS-F-serratus_M_contig826:90404..908331622932451.0937245-CDS-F-serratus_M_contig826:90404..90833Fucus serratus maleCDSF-serratus_M_contig826 90405..90833 +
1690964315.0925577-CDS-F-serratus_M_contig826:90404..908331690964315.0925577-CDS-F-serratus_M_contig826:90404..90833Fucus serratus maleCDSF-serratus_M_contig826 90405..90833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig826.19659.1prot_F-serratus_M_contig826.19659.1Fucus serratus malepolypeptideF-serratus_M_contig826 90405..90833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig826.19659.1

>prot_F-serratus_M_contig826.19659.1 ID=prot_F-serratus_M_contig826.19659.1|Name=mRNA_F-serratus_M_contig826.19659.1|organism=Fucus serratus male|type=polypeptide|length=143bp
HTAAAVAANGRPPPERRKHAGWGTRATGFHSSTLQGLNLWGFVPLLGAEF
LLPRGLDRPLLDHTPNSSELLLLLFICRRGHVFFPRRHMLLVRNGKAKAL
KVQAGVEWRGENDGEIAERRRISGIVVPHSPVQPRKERFVQLL
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mRNA from alignment at F-serratus_M_contig826:90405..90833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig826.19659.1 ID=mRNA_F-serratus_M_contig826.19659.1|Name=mRNA_F-serratus_M_contig826.19659.1|organism=Fucus serratus male|type=mRNA|length=429bp|location=Sequence derived from alignment at F-serratus_M_contig826:90405..90833+ (Fucus serratus male)
CACACCGCTGCTGCCGTCGCCGCCAACGGCCGCCCTCCGCCCGAACGACG AAAACACGCTGGCTGGGGTACTCGAGCGACTGGGTTCCACTCGAGCACGC TTCAGGGCCTGAACCTCTGGGGCTTCGTTCCGCTTCTCGGCGCGGAGTTT CTCCTCCCGCGCGGCCTTGATCGCCCTCTCCTTGACCACACGCCAAATTC CAGCGAGCTTCTCCTTCTCCTCTTCATCTGTCGTCGGGGCCATGTATTCT TTCCCCGTCGGCATATGCTCCTTGTCCGCAACGGAAAGGCGAAGGCTCTG AAGGTACAAGCCGGTGTTGAATGGCGGGGTGAGAACGACGGCGAGATCGC GGAACGGCGAAGGATCAGCGGAATTGTCGTCCCACACTCGCCCGTACAGC CTCGAAAGGAGCGCTTTGTTCAGCTCCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig826:90405..90833+

>mRNA_F-serratus_M_contig826.19659.1 ID=mRNA_F-serratus_M_contig826.19659.1|Name=mRNA_F-serratus_M_contig826.19659.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig826:90405..90833+ (Fucus serratus male)
CACACCGCTGCTGCCGTCGCCGCCAACGGCCGCCCTCCGCCCGAACGACG
AAAACACGCTGGCTGGGGTACTCGAGCGACTGGGTTCCACTCGAGCACGC
TTCAGGGCCTGAACCTCTGGGGCTTCGTTCCGCTTCTCGGCGCGGAGTTT
CTCCTCCCGCGCGGCCTTGATCGCCCTCTCCTTGACCACACGCCAAATTC
CAGCGAGCTTCTCCTTCTCCTCTTCATCTGTCGTCGGGGCCATGTATTCT
TTCCCCGTCGGCATATGCTCCTTGTCCGCAACGGAAAGGCGAAGGCTCTG
AAGGTACAAGCCGGTGTTGAATGGCGGGGTGAGAACGACGGCGAGATCGC
GGAACGGCGAAGGATCAGCGGAATTGTCGTCCCACACTCGCCCGTACAGC
CTCGAAAGGAGCGCTTTGTTCAGCTCCTTCACACCGCTGCTGCCGTCGCC
GCCAACGGCCGCCCTCCGCCCGAACGACGAAAACACGCTGGCTGGGGTAC
TCGAGCGACTGGGTTCCACTCGAGCACGCTTCAGGGCCTGAACCTCTGGG
GCTTCGTTCCGCTTCTCGGCGCGGAGTTTCTCCTCCCGCGCGGCCTTGAT
CGCCCTCTCCTTGACCACACGCCAAATTCCAGCGAGCTTCTCCTTCTCCT
CTTCATCTGTCGTCGGGGCCATGTATTCTTTCCCCGTCGGCATATGCTCC
TTGTCCGCAACGGAAAGGCGAAGGCTCTGAAGGTACAAGCCGGTGTTGAA
TGGCGGGGTGAGAACGACGGCGAGATCGCGGAACGGCGAAGGATCAGCGG
AATTGTCGTCCCACACTCGCCCGTACAGCCTCGAAAGGAGCGCTTTGTTC
AGCTCCTT
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