mRNA_F-serratus_M_contig826.19656.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig826.19656.1
Unique NamemRNA_F-serratus_M_contig826.19656.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig826.19656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig826contigF-serratus_M_contig826:13787..14720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig826.19656.1prot_F-serratus_M_contig826.19656.1Fucus serratus malepolypeptideF-serratus_M_contig826 13787..14601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932450.9882016-CDS-F-serratus_M_contig826:13786..139311622932450.9882016-CDS-F-serratus_M_contig826:13786..13931Fucus serratus maleCDSF-serratus_M_contig826 13787..13931 +
1690964315.0625505-CDS-F-serratus_M_contig826:13786..139311690964315.0625505-CDS-F-serratus_M_contig826:13786..13931Fucus serratus maleCDSF-serratus_M_contig826 13787..13931 +
1622932451.0127435-CDS-F-serratus_M_contig826:14503..146011622932451.0127435-CDS-F-serratus_M_contig826:14503..14601Fucus serratus maleCDSF-serratus_M_contig826 14504..14601 +
1690964315.0754972-CDS-F-serratus_M_contig826:14503..146011690964315.0754972-CDS-F-serratus_M_contig826:14503..14601Fucus serratus maleCDSF-serratus_M_contig826 14504..14601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932451.0373886-UTR-F-serratus_M_contig826:14601..147201622932451.0373886-UTR-F-serratus_M_contig826:14601..14720Fucus serratus maleUTRF-serratus_M_contig826 14602..14720 +
1690964315.0840287-UTR-F-serratus_M_contig826:14601..147201690964315.0840287-UTR-F-serratus_M_contig826:14601..14720Fucus serratus maleUTRF-serratus_M_contig826 14602..14720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig826.19656.1

>prot_F-serratus_M_contig826.19656.1 ID=prot_F-serratus_M_contig826.19656.1|Name=mRNA_F-serratus_M_contig826.19656.1|organism=Fucus serratus male|type=polypeptide|length=81bp
KWYKKYSKKATSPKIETRVATGAPAFEGRLNEGLRLQRKHRDKNEAKQTK
QSKTNVTPEKKRHGIYKQNVRRIPVRATWG*
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mRNA from alignment at F-serratus_M_contig826:13787..14720+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig826.19656.1 ID=mRNA_F-serratus_M_contig826.19656.1|Name=mRNA_F-serratus_M_contig826.19656.1|organism=Fucus serratus male|type=mRNA|length=934bp|location=Sequence derived from alignment at F-serratus_M_contig826:13787..14720+ (Fucus serratus male)
AAATGGTACAAGAAATACTCGAAAAAAGCGACATCTCCAAAAATAGAAAC
ACGTGTGGCTACCGGGGCGCCTGCATTCGAAGGACGATTGAACGAAGGGC
TGCGGCTTCAACGAAAGCATAGAGACAAAAACGAAGCAAAACAAAGCACA
TTTTACTTTTGATGTACTATTACTAGTGCTCCTTCTTCGTATTCCTGGCC
ACCGCGGGGTCATTGCCCAGTCTTAGCATGAGGAGTACTTGTGCGTCGTA
GCCATGACAAGTTGGAGCGAGGAACCCTGTTCTTTCCGCGTGCCTCTTAC
CTCCTCGTGTGATCTCCTACTGATGCTCGTCTACTTTCAGGTGAATACTG
TTGTGTACTTGGATCTGAAGATTCCGCATCATCATGGTCCTCTTGTCCTC
TTTTAATTATGTACTATATTCGTCTTTATTACTGAATGGTGTACTGTATT
CGTCTGTATTACTGTTTGATGATGTACTTTTTTGTCCGTTTTTTTGTGTC
CCTGCATGGCGATTAATGTAAGTGTACAGTATAACGGTGGGCTTCTCCCC
GGTATTATACTGTTGACCCAATGTTATATGCATCGGGGAACCCGTTTAAA
TGCCATGAAGAGGTTTTGTATCTGCAGCCCTTGAGCCCACCTAAACGTTT
TGATTTTTTTCCCCCTACCGGGGGCGGATCAGAAGGTTTAGGTGCCGTTC
ACATTTTTCTTTAAAAGCAAAACAAAGCAAAACGAACGTAACACCAGAGA
AAAAACGTCATGGCATCTACAAACAGAACGTCCGGAGGATACCAGTTCGC
GCCACTTGGGGCTAGTCAACAAGGGCGAGCGAACCAGCACGAGCCCGCTT
ACTTTGGGCTATCCTCTTCTTGGTCCTTCCCGTCACGTTCGGGCATACCA
CTGCGTGCCGTAGTCCAGCCTTGACTTTCTCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig826:13787..14720+

>mRNA_F-serratus_M_contig826.19656.1 ID=mRNA_F-serratus_M_contig826.19656.1|Name=mRNA_F-serratus_M_contig826.19656.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig826:13787..14720+ (Fucus serratus male)
AAATGGTACAAGAAATACTCGAAAAAAGCGACATCTCCAAAAATAGAAAC
ACGTGTGGCTACCGGGGCGCCTGCATTCGAAGGACGATTGAACGAAGGGC
TGCGGCTTCAACGAAAGCATAGAGACAAAAACGAAGCAAAACAAAAAATG
GTACAAGAAATACTCGAAAAAAGCGACATCTCCAAAAATAGAAACACGTG
TGGCTACCGGGGCGCCTGCATTCGAAGGACGATTGAACGAAGGGCTGCGG
CTTCAACGAAAGCATAGAGACAAAAACGAAGCAAAACAAACAAAACAAAG
CAAAACGAACGTAACACCAGAGAAAAAACGTCATGGCATCTACAAACAGA
ACGTCCGGAGGATACCAGTTCGCGCCACTTGGGGCTAGCAAAACAAAGCA
AAACGAACGTAACACCAGAGAAAAAACGTCATGGCATCTACAAACAGAAC
GTCCGGAGGATACCAGTTCGCGCCACTTGGGGCTAG
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