prot_F-serratus_M_contig8252.19655.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig8252.19655.1
Unique Nameprot_F-serratus_M_contig8252.19655.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length48
Homology
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BLAST of mRNA_F-serratus_M_contig8252.19655.1 vs. uniprot
Match: A0A087XLD6_POEFO (PHD-type domain-containing protein n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A087XLD6_POEFO)

HSP 1 Score: 47.4 bits (111), Expect = 8.400e-5
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 0 
Query:    1 VEARKRVAQK--CTSCGLPGAVIGCHASSCHVNTHYACAVKEVGVLEEPN 48
            +E   ++AQ+  C+SCG PGA++GC    C  N HY CA++   VL E N
Sbjct:  473 LEEAAQIAQETICSSCGQPGAIMGCFQKGCLRNYHYPCALQSGAVLNEEN 522
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8252.19655.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A087XLD6_POEFO8.400e-544.00PHD-type domain-containing protein n=1 Tax=Poecili... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..48
e-value: 1.5E-8
score: 36.6
NoneNo IPR availablePFAMPF13771zf-HC5HC2Hcoord: 3..43
e-value: 5.5E-8
score: 33.0
IPR034732Extended PHD (ePHD) domainPROSITEPS51805EPHDcoord: 1..48
score: 11.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8252contigF-serratus_M_contig8252:462..605 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8252.19655.1mRNA_F-serratus_M_contig8252.19655.1Fucus serratus malemRNAF-serratus_M_contig8252 462..605 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig8252.19655.1 ID=prot_F-serratus_M_contig8252.19655.1|Name=mRNA_F-serratus_M_contig8252.19655.1|organism=Fucus serratus male|type=polypeptide|length=48bp
VEARKRVAQKCTSCGLPGAVIGCHASSCHVNTHYACAVKEVGVLEEPN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR034732EPHD