mRNA_F-serratus_M_contig8252.19655.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8252.19655.1
Unique NamemRNA_F-serratus_M_contig8252.19655.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8252.19655.1 vs. uniprot
Match: A0A087XLD6_POEFO (PHD-type domain-containing protein n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A087XLD6_POEFO)

HSP 1 Score: 47.4 bits (111), Expect = 8.400e-5
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 VEARKRVAQK--CTSCGLPGAVIGCHASSCHVNTHYACAVKEVGVLEEPN 144
            +E   ++AQ+  C+SCG PGA++GC    C  N HY CA++   VL E N
Sbjct:  473 LEEAAQIAQETICSSCGQPGAIMGCFQKGCLRNYHYPCALQSGAVLNEEN 522
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8252.19655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A087XLD6_POEFO8.400e-544.00PHD-type domain-containing protein n=1 Tax=Poecili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8252contigF-serratus_M_contig8252:462..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932450.9337323-CDS-F-serratus_M_contig8252:461..6051622932450.9337323-CDS-F-serratus_M_contig8252:461..605Fucus serratus maleCDSF-serratus_M_contig8252 462..605 +
1690964315.050162-CDS-F-serratus_M_contig8252:461..6051690964315.050162-CDS-F-serratus_M_contig8252:461..605Fucus serratus maleCDSF-serratus_M_contig8252 462..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8252.19655.1prot_F-serratus_M_contig8252.19655.1Fucus serratus malepolypeptideF-serratus_M_contig8252 462..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8252.19655.1

>prot_F-serratus_M_contig8252.19655.1 ID=prot_F-serratus_M_contig8252.19655.1|Name=mRNA_F-serratus_M_contig8252.19655.1|organism=Fucus serratus male|type=polypeptide|length=48bp
VEARKRVAQKCTSCGLPGAVIGCHASSCHVNTHYACAVKEVGVLEEPN
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mRNA from alignment at F-serratus_M_contig8252:462..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8252.19655.1 ID=mRNA_F-serratus_M_contig8252.19655.1|Name=mRNA_F-serratus_M_contig8252.19655.1|organism=Fucus serratus male|type=mRNA|length=144bp|location=Sequence derived from alignment at F-serratus_M_contig8252:462..605+ (Fucus serratus male)
GTTGAGGCACGCAAGAGAGTGGCCCAGAAGTGCACGTCGTGCGGTCTTCC
GGGGGCTGTGATCGGGTGTCACGCATCTTCTTGCCACGTTAACACGCACT
ACGCGTGCGCCGTGAAGGAGGTGGGAGTTTTGGAAGAGCCGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8252:462..605+

>mRNA_F-serratus_M_contig8252.19655.1 ID=mRNA_F-serratus_M_contig8252.19655.1|Name=mRNA_F-serratus_M_contig8252.19655.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig8252:462..605+ (Fucus serratus male)
GTTGAGGCACGCAAGAGAGTGGCCCAGAAGTGCACGTCGTGCGGTCTTCC
GGGGGCTGTGATCGGGTGTCACGCATCTTCTTGCCACGTTAACACGCACT
ACGCGTGCGCCGTGAAGGAGGTGGGAGTTTTGGAAGAGCCGAACGTTGAG
GCACGCAAGAGAGTGGCCCAGAAGTGCACGTCGTGCGGTCTTCCGGGGGC
TGTGATCGGGTGTCACGCATCTTCTTGCCACGTTAACACGCACTACGCGT
GCGCCGTGAAGGAGGTGGGAGTTTTGGAAGAGCCGAAC
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