prot_F-serratus_M_contig825.19651.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig825.19651.1
Unique Name	prot_F-serratus_M_contig825.19651.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	451

Homology

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BLAST of mRNA_F-serratus_M_contig825.19651.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 6.240e-108
Identity = 204/416 (49.04%), Postives = 265/416 (63.70%), Query Frame = 0

Query:   20 LASDFETALNLIVKHHGNDVKGLSHTLESLKHIATRLNDEPHIAKYRTIRMLNKTFWERVGRVDGGIPFMVALGFDIVDQGGE-PAFHTRKGAPVKSDLIRALRLLSAQEALSTGSAVDRELVDGDAKMDMSGTSLKALDTSGFNPFATVFSRKSRTRVQDRLEKELASLAERQASVQQRFSGIGDRNITFLLPRPTSRRVADEHERDSVGGGDDRDLQERSLALVSQVSRERIAREELRRFETRAAKELRLLRTSKVYSYVLVRVRLPSGVYIQGRFNLEETLEDVYHVLEQSLSEEAGVESPADQSCLGFELYMAPATRVLPRDSTR-LKDVNAGAPACMLHLRWQGEGSNAELWAQKLEASKGRIT-GGSARAWLPYAPRHDLPEACSPKRPTNPPRAERRSSPVDDGEDLES 432
            LAS+ + A + IV HH  D++ L+ TL+SL +IA  L +EP   KYR IR+LNK  WERVG VDGGI FM ALGFD+    G+ P F  R GAPV++D+ +AL LLSA+  L   S   R   + + +           + SGFNPF T FSRKSRTR+Q+R E+ LA L+  QA  QQRFS + +R +T LLP+      A+  E++  G   + D ++R L LV+Q+ RER+  +E+ RFETRAAK+LRLLRT+K Y YVL R+RLP GVY+Q RFN +E+LE +Y V  Q LS EA V+    Q C  FEL+MAP TRVLPRDST+ L+D N  APAC+LHLRW+   +  + WAQ  E    R T  G A   +PY+ R D+PEA S +RP   P AE  +   DDG + ES
Sbjct:   19 LASNLQGAFDQIVSHHAKDLRALNRTLDSLTNIAENLFNEPENPKYRKIRLLNKVVWERVGSVDGGISFMSALGFDLNPGTGDGPCFQARTGAPVETDVRQALDLLSAR--LLHQSESGRPAAEAEPR-----------EASGFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLPQQPHEASAEMEEQEQDGEQGEADAEQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEAEVDG---QLCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQELPPAEEGAD--DDGSESES 416

[Close]

BLAST of mRNA_F-serratus_M_contig825.19651.1 vs. uniprot
Match: A0A835YNR5_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.090e-25
Identity = 116/391 (29.67%), Postives = 174/391 (44.50%), Query Frame = 0

Query:   45 TLESLKHIAT-RLNDEPHIAKYRTIRMLNKTFWERVGRVDGGIPFMVALGFDIVDQGGE--PAFHTRKGAPVKSDLIRALRLLSAQ-EALSTGSAVDRELVDGDAKMDMS--GTSLKALDTSGFNPFATVFSRKSRTRVQDRLEKELASLAERQASVQQRFSGIGDRNITFLLP---RPTSRRVA---------DEHERDSVGGGDDRD-----------LQERSLALVSQVSRERIAREELRRFETRAAKELRLLRTSKVYSYVLVRVRLPSGVYIQGRFNLEE-TLEDVYHVLEQSLSEEAGVESPADQSCLGFELYMAPATRVLPRDSTRLKDVNAGAPACMLHLRWQG--EGSNAELWAQKLEASKGRITGGSARAWLPYAPRHDLP 403
            TL+ L+ +    L  +   +  ++IR++N  FWE VG V GGI  M+ALGF++ D+G    PAF  R  A  +S L  A  LL  +  AL  GS                  G    A   S FNP+A+ FSRK++TRVQD           ++ +   RF  + DRNIT L P   +P +   A            E D+   GD              L   + + V Q  R   AR++ + F + AA+ L  LR +++ +Y LV VR P GV +Q R+N +E T+  V  V+  SL  E           L F L     TR L  D   L++    A A ++HL+W+   E  ++   A+ +   +  +  G+         ++D+P
Sbjct:   10 TLQLLQRVVEGALQQQNQESAAKSIRLMNSAFWESVGSVPGGIGLMMALGFELEDRGDGRGPAFVLRGDAD-RSLLELAQALLQEELAALGKGSVSSSXXXXXXXXXXXXXIGAIAGASAQSDFNPYASAFSRKAKTRVQDXXXXXXXXXXXQRRAHLLRFDKMEDRNITVLQPLTGKPATGAAATSADANASLSSSEADAASSGDHSSEYDXXXXXXXXLSAATASAVLQAIRSSRARQQTQPFASAAARRLHALRAARLRAYALVNVRFPDGVQLQARYNAQEDTVGHVVDVVRHSLRREV--------RHLPFRLSALGPTRALLPDQL-LQEAGMVAAANVVHLKWEAGEEAKSSAAMAETMSVLRAELVQGARCLAAARREQYDVP 390

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig825.19651.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig825.19651.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FJK5_ECTSI	6.240e-108	49.04	UBX domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YNR5_9STRA	2.090e-25	29.67	UBX domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..198
None	No IPR available	GENE3D	3.10.20.90		coord: 271..363 e-value: 5.8E-7 score: 31.5
None	No IPR available	GENE3D	1.20.58.2190		coord: 26..122 e-value: 8.6E-11 score: 43.3
None	No IPR available	PANTHER	PTHR23153	UBX-RELATED	coord: 251..367 coord: 57..133
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..450
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..21
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..21 score: 0.768
IPR001012	UBX domain	SMART	SM00166	ubx_3	coord: 272..364 e-value: 0.0085 score: 17.8
IPR001012	UBX domain	PFAM	PF00789	UBX	coord: 277..356 e-value: 7.9E-7 score: 29.2
IPR001012	UBX domain	PROSITE	PS50033	UBX	coord: 275..310 score: 9.152
IPR018997	PUB domain	PFAM	PF09409	PUB	coord: 45..101 e-value: 1.4E-10 score: 40.9
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 259..352
IPR036339	PUB-like domain superfamily	SUPERFAMILY	143503	PUG domain-like	coord: 33..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig825	contig	F-serratus_M_contig825:216552..219630 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig825.19651.1	mRNA_F-serratus_M_contig825.19651.1	Fucus serratus male	mRNA	F-serratus_M_contig825 208382..220328 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig825.19651.1 ID=prot_F-serratus_M_contig825.19651.1|Name=mRNA_F-serratus_M_contig825.19651.1|organism=Fucus serratus male|type=polypeptide|length=451bp
MRRFIYCALATIVFRISAVLASDFETALNLIVKHHGNDVKGLSHTLESLK
HIATRLNDEPHIAKYRTIRMLNKTFWERVGRVDGGIPFMVALGFDIVDQG
GEPAFHTRKGAPVKSDLIRALRLLSAQEALSTGSAVDRELVDGDAKMDMS
GTSLKALDTSGFNPFATVFSRKSRTRVQDRLEKELASLAERQASVQQRFS
GIGDRNITFLLPRPTSRRVADEHERDSVGGGDDRDLQERSLALVSQVSRE
RIAREELRRFETRAAKELRLLRTSKVYSYVLVRVRLPSGVYIQGRFNLEE
TLEDVYHVLEQSLSEEAGVESPADQSCLGFELYMAPATRVLPRDSTRLKD
VNAGAPACMLHLRWQGEGSNAELWAQKLEASKGRITGGSARAWLPYAPRH
DLPEACSPKRPTNPPRAERRSSPVDDGEDLESTAADSSEFFEKTLNCRLE
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001012	UBX_dom
IPR018997	PUB_domain
IPR029071	Ubiquitin-like_domsf
IPR036339	PUB-like_dom_sf