mRNA_F-serratus_M_contig825.19650.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig825.19650.1
Unique NamemRNA_F-serratus_M_contig825.19650.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig825.19650.1 vs. uniprot
Match: D7FJK4_ECTSI (TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.780e-8
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:  524 DVWTYKKIAAQLAIGNEEARDNAHAFMDAHRAMCGKRVELANSERTREIL 673
            D  TYKKI AQL    +  R+N+HAF+D +RAM GK+VELA SERT E L
Sbjct:  166 DTHTYKKIGAQLVTLGQAERENSHAFVDCYRAMAGKQVELATSERTNECL 215
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig825.19650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJK4_ECTSI1.780e-860.00TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig825contigF-serratus_M_contig825:206787..208245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D7FJK4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006440.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size697
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig825.19650.1prot_F-serratus_M_contig825.19650.1Fucus serratus malepolypeptideF-serratus_M_contig825 206787..208232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932449.6751137-CDS-F-serratus_M_contig825:206786..2074131622932449.6751137-CDS-F-serratus_M_contig825:206786..207413Fucus serratus maleCDSF-serratus_M_contig825 206787..207413 -
1690964314.3958085-CDS-F-serratus_M_contig825:206786..2074131690964314.3958085-CDS-F-serratus_M_contig825:206786..207413Fucus serratus maleCDSF-serratus_M_contig825 206787..207413 -
1622932449.6911392-CDS-F-serratus_M_contig825:208175..2082321622932449.6911392-CDS-F-serratus_M_contig825:208175..208232Fucus serratus maleCDSF-serratus_M_contig825 208176..208232 -
1690964314.410081-CDS-F-serratus_M_contig825:208175..2082321690964314.410081-CDS-F-serratus_M_contig825:208175..208232Fucus serratus maleCDSF-serratus_M_contig825 208176..208232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932449.7202976-UTR-F-serratus_M_contig825:208232..2082451622932449.7202976-UTR-F-serratus_M_contig825:208232..208245Fucus serratus maleUTRF-serratus_M_contig825 208233..208245 -
1690964314.426677-UTR-F-serratus_M_contig825:208232..2082451690964314.426677-UTR-F-serratus_M_contig825:208232..208245Fucus serratus maleUTRF-serratus_M_contig825 208233..208245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig825.19650.1

>prot_F-serratus_M_contig825.19650.1 ID=prot_F-serratus_M_contig825.19650.1|Name=mRNA_F-serratus_M_contig825.19650.1|organism=Fucus serratus male|type=polypeptide|length=228bp
MGDPRVSEAIAFYQDKLRQDSNNPGYHHHLAPLLVARGNIIAGIRHYRRA
YQLNPTDIDSKNDLATVLWRMGKWEAALAALCRVVAVDNDHFEGHVNLAA
VYYKKGCYDLALKHARKATQLRPRDPLSHRVIAQVLDQIGNSKEALHHRL
IAVRRGPGAAGLTRGGYHPQDVWTYKKIAAQLAIGNEEARDNAHAFMDAH
RAMCGKRVELANSERTREILQKSLRHQ*
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mRNA from alignment at F-serratus_M_contig825:206787..208245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig825.19650.1 ID=mRNA_F-serratus_M_contig825.19650.1|Name=mRNA_F-serratus_M_contig825.19650.1|organism=Fucus serratus male|type=mRNA|length=1459bp|location=Sequence derived from alignment at F-serratus_M_contig825:206787..208245- (Fucus serratus male)
TTTGTTTCCAAACATGGGCGATCCCCGCGTCAGCGAAGCTATTGCATTCT
ACCAAGACAAGCTGCGCCAGGTATGCTACAACACCGCCCAAGATATATGT
ATGTTTCCCTCCGGTAGAAATGAATCGAAAGTATCATGAATAAAGTTTCT
TGCACATATACTGTATCTTATCGGTTCTCACAGTCCACTCCACTGGTATA
CAGCGTACAGCCCTCCTAACACCGTCGAAGTCATGGCGGAAATTAAGTGA
GCAGCGCCTCGAACCTCGCTTGAAGTCGGCTTCAAAGCGACACGAAGAAT
TTTCGGGCGAAAAGACTTGGCATTTAAGAGGCCTTGACATACCTCAAGGG
TTAGCGAAGGTCTAGGCACTCTTCGCTTGAGAAGTCATCAATATACACTT
ATTCCTTATTGAGCATATGAACACGAGAGATGATCATACTAAGAAGTTCA
AATATATTTCTGCCGATGTACTCACACAAAATGCATCTTACTCTAGGGAT
TGAAGGCCCCATGAACGAAAAAATAAAAATAAAAATCCGATTTGTCTTTG
TATTGAAGCCTTTAATGGAAAAGTAGGCTTCATCCCGTAGAAGCAACAAA
AGTAAATGAAATCTGTACAACCCGTGGGGAATCCAGTAAATACACAGCGT
TGTGGCGCGGTTATGCCAAGTACTTTCTTTTGTCCAGCGCTAATATTCTC
TACGATTTCTCTCTTAAGGAAATGTTCATGTGAAGGGTCGTTGATTCGAT
CGCTGGGAGCCAGAATTCTGCTTTGACACACCAAAGGACAAGTCTCTCAT
CCGTGTCTTTTGTCTTTTTCCGCCCTTTCCAGGACTCCAACAATCCGGGC
TATCATCACCATCTGGCCCCTCTTCTCGTAGCTCGAGGCAACATAATCGC
GGGGATTCGTCACTACCGTCGCGCTTACCAGCTCAACCCAACGGACATCG
ACTCCAAGAACGATTTGGCGACCGTCCTTTGGCGGATGGGCAAGTGGGAG
GCAGCGCTAGCAGCTCTTTGTCGAGTTGTTGCCGTGGACAACGATCACTT
CGAAGGCCACGTGAATCTCGCGGCGGTGTACTACAAGAAGGGCTGCTACG
ACCTCGCCCTCAAGCACGCCAGGAAGGCGACACAGCTCAGACCACGAGAT
CCCTTGAGCCACCGAGTGATCGCTCAGGTGCTCGATCAAATTGGTAACTC
CAAGGAGGCCTTGCACCACCGCTTAATCGCTGTCAGGAGGGGGCCCGGAG
CCGCTGGCTTGACAAGGGGGGGTTACCACCCTCAAGATGTCTGGACTTAC
AAGAAGATTGCTGCACAGCTCGCTATTGGGAACGAAGAGGCCCGAGATAA
TGCACATGCTTTCATGGACGCGCACAGAGCCATGTGCGGAAAGCGGGTTG
AGCTTGCCAACTCTGAGAGGACCAGGGAGATTCTACAGAAGAGTCTGCGT
CACCAATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig825:206787..208245-

>mRNA_F-serratus_M_contig825.19650.1 ID=mRNA_F-serratus_M_contig825.19650.1|Name=mRNA_F-serratus_M_contig825.19650.1|organism=Fucus serratus male|type=CDS|length=1368bp|location=Sequence derived from alignment at F-serratus_M_contig825:206787..208245- (Fucus serratus male)
ATGGGCGATCCCCGCGTCAGCGAAGCTATTGCATTCTACCAAGACAAGCT
GCGCCAGATGGGCGATCCCCGCGTCAGCGAAGCTATTGCATTCTACCAAG
ACAAGCTGCGCCAGGACTCCAACAATCCGGGCTATCATCACCATCTGGCC
CCTCTTCTCGTAGCTCGAGGCAACATAATCGCGGGGATTCGTCACTACCG
TCGCGCTTACCAGCTCAACCCAACGGACATCGACTCCAAGAACGATTTGG
CGACCGTCCTTTGGCGGATGGGCAAGTGGGAGGCAGCGCTAGCAGCTCTT
TGTCGAGTTGTTGCCGTGGACAACGATCACTTCGAAGGCCACGTGAATCT
CGCGGCGGTGTACTACAAGAAGGGCTGCTACGACCTCGCCCTCAAGCACG
CCAGGAAGGCGACACAGCTCAGACCACGAGATCCCTTGAGCCACCGAGTG
ATCGCTCAGGTGCTCGATCAAATTGGTAACTCCAAGGAGGCCTTGCACCA
CCGCTTAATCGCTGTCAGGAGGGGGCCCGGAGCCGCTGGCTTGACAAGGG
GGGGTTACCACCCTCAAGATGTCTGGACTTACAAGAAGATTGCTGCACAG
CTCGCTATTGGGAACGAAGAGGCCCGAGATAATGCACATGCTTTCATGGA
CGCGCACAGAGCCATGTGCGGAAAGCGGGTTGAGCTTGCCAACTCTGAGA
GGACCAGGGAGATTCTACAGAAGAGTCTGCGTCACCAATAAGACTCCAAC
AATCCGGGCTATCATCACCATCTGGCCCCTCTTCTCGTAGCTCGAGGCAA
CATAATCGCGGGGATTCGTCACTACCGTCGCGCTTACCAGCTCAACCCAA
CGGACATCGACTCCAAGAACGATTTGGCGACCGTCCTTTGGCGGATGGGC
AAGTGGGAGGCAGCGCTAGCAGCTCTTTGTCGAGTTGTTGCCGTGGACAA
CGATCACTTCGAAGGCCACGTGAATCTCGCGGCGGTGTACTACAAGAAGG
GCTGCTACGACCTCGCCCTCAAGCACGCCAGGAAGGCGACACAGCTCAGA
CCACGAGATCCCTTGAGCCACCGAGTGATCGCTCAGGTGCTCGATCAAAT
TGGTAACTCCAAGGAGGCCTTGCACCACCGCTTAATCGCTGTCAGGAGGG
GGCCCGGAGCCGCTGGCTTGACAAGGGGGGGTTACCACCCTCAAGATGTC
TGGACTTACAAGAAGATTGCTGCACAGCTCGCTATTGGGAACGAAGAGGC
CCGAGATAATGCACATGCTTTCATGGACGCGCACAGAGCCATGTGCGGAA
AGCGGGTTGAGCTTGCCAACTCTGAGAGGACCAGGGAGATTCTACAGAAG
AGTCTGCGTCACCAATAA
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