mRNA_F-serratus_M_contig825.19648.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig825.19648.1
Unique NamemRNA_F-serratus_M_contig825.19648.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.520e-31
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS 186
            MGSKALVNSHPK FGKGGRHCRVCSNQHGLIRKYGL MCRQCFRVYAT+IGFTKFS
Sbjct:   43 MGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTKFS 98
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.590e-24
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS 186
            MG+KAL NSHPK +GKGG  CRVC+NQHG+I+KYG+NMCRQCFR YA DIGF K S
Sbjct:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A5N5TKP3_9CRUS (40S ribosomal protein S29 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5TKP3_9CRUS)

HSP 1 Score: 102 bits (253), Expect = 2.860e-24
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   16 DMGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS*VLSTRIRKFSWRV 228
            +  S  L NSHPKKFG G R CR CSN+HGLIRKYGLNMCRQCFR YA+DIGF K S + +  I KF + V
Sbjct:    7 NFNSNKLWNSHPKKFGPGSRRCRSCSNRHGLIRKYGLNMCRQCFREYASDIGFKKVSRIFNVGILKFRFSV 77
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A8C7INH3_ONCKI (40S ribosomal protein S29 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7INH3_ONCKI)

HSP 1 Score: 99.4 bits (246), Expect = 5.650e-23
Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS*--VLSTRIRKFSWRV-EILAAAGCDGEG 264
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S   VLS       W V +I+      G+G
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVKASICVVLSVSTVSHGWLVVDIVLYGNVSGKG 85
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A3B5LFA5_9TELE (40S ribosomal protein S29 n=2 Tax=Xiphophorus TaxID=8082 RepID=A0A3B5LFA5_9TELE)

HSP 1 Score: 98.6 bits (244), Expect = 6.190e-23
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS*VLSTRIR 210
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S +   ++R
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKVSNIFLFKLR 64
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A6J1U725_9SAUR (40S ribosomal protein S29 n=3 Tax=Euteleostomi TaxID=117571 RepID=A0A6J1U725_9SAUR)

HSP 1 Score: 97.8 bits (242), Expect = 6.830e-23
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTK 180
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGFTK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFTK 54
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A3B3VKB5_9TELE (40S ribosomal protein S29 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3VKB5_9TELE)

HSP 1 Score: 98.2 bits (243), Expect = 7.180e-23
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS*VL 195
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S +L
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKVSNIL 59
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A060XL70_ONCMY (40S ribosomal protein S29 n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A060XL70_ONCMY)

HSP 1 Score: 97.8 bits (242), Expect = 9.070e-23
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS 186
            MG ++L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S
Sbjct:    1 MGHQSLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFVKAS 56
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: A0A3Q3VUS4_MOLML (40S ribosomal protein S29 n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3VUS4_MOLML)

HSP 1 Score: 99.0 bits (245), Expect = 9.680e-23
Identity = 53/110 (48.18%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTKFS*VLSTRIRKFSWRVEILAAAGCDGEGD*VVDSDLKQIHRSKN*HGVYKGGTSIT 348
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGF K S VL                +G   +      S ++++HRS+  H   K   +IT
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKASIVL-------------YPPSGASSK------SFIEEVHRSQQHHRRQKWTNNIT 91
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BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Match: UPI00090E0E50 (Uncharacterized protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=UPI00090E0E50)

HSP 1 Score: 97.8 bits (242), Expect = 1.190e-22
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   19 MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDIGFTK 180
            MG + L  SHP+KFG+G R CRVCSN+HGLIRKYGLNMCRQCFR YA DIGFTK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFTK 54
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig825.19648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK2_ECTSI2.520e-3194.64Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A835YKD0_9STRA1.590e-2475.00Putative 40S ribosomal protein RPS29 n=1 Tax=Tribo... [more]
A0A5N5TKP3_9CRUS2.860e-2464.7940S ribosomal protein S29 n=1 Tax=Armadillidium na... [more]
A0A8C7INH3_ONCKI5.650e-2358.8240S ribosomal protein S29 n=1 Tax=Oncorhynchus kis... [more]
A0A3B5LFA5_9TELE6.190e-2367.1940S ribosomal protein S29 n=2 Tax=Xiphophorus TaxI... [more]
A0A6J1U725_9SAUR6.830e-2377.7840S ribosomal protein S29 n=3 Tax=Euteleostomi Tax... [more]
A0A3B3VKB5_9TELE7.180e-2372.8840S ribosomal protein S29 n=1 Tax=Poecilia latipin... [more]
A0A060XL70_ONCMY9.070e-2375.0040S ribosomal protein S29 n=2 Tax=Oncorhynchus Tax... [more]
A0A3Q3VUS4_MOLML9.680e-2348.1840S ribosomal protein S29 n=1 Tax=Mola mola TaxID=... [more]
UPI00090E0E501.190e-2277.78Uncharacterized protein n=1 Tax=Xenopus laevis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig825contigF-serratus_M_contig825:193360..194700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7FJK2
Preferred namerps29
KEGG koko:K02980,ko:K20308
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG0199@1,KOG3506@2759
Ec32 ortholog descriptionsimilar to 40S ribosomal protein S29
Ec32 orthologEc-04_006420.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Exons2
Model size789
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig825.19648.1prot_F-serratus_M_contig825.19648.1Fucus serratus malepolypeptideF-serratus_M_contig825 193960..194682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932449.2329547-UTR-F-serratus_M_contig825:193359..1939591622932449.2329547-UTR-F-serratus_M_contig825:193359..193959Fucus serratus maleUTRF-serratus_M_contig825 193360..193959 -
1690964314.171542-UTR-F-serratus_M_contig825:193359..1939591690964314.171542-UTR-F-serratus_M_contig825:193359..193959Fucus serratus maleUTRF-serratus_M_contig825 193360..193959 -
1622932449.2773216-UTR-F-serratus_M_contig825:194682..1947001622932449.2773216-UTR-F-serratus_M_contig825:194682..194700Fucus serratus maleUTRF-serratus_M_contig825 194683..194700 -
1690964314.2110238-UTR-F-serratus_M_contig825:194682..1947001690964314.2110238-UTR-F-serratus_M_contig825:194682..194700Fucus serratus maleUTRF-serratus_M_contig825 194683..194700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932449.2497134-CDS-F-serratus_M_contig825:193959..1939681622932449.2497134-CDS-F-serratus_M_contig825:193959..193968Fucus serratus maleCDSF-serratus_M_contig825 193960..193968 -
1690964314.1861825-CDS-F-serratus_M_contig825:193959..1939681690964314.1861825-CDS-F-serratus_M_contig825:193959..193968Fucus serratus maleCDSF-serratus_M_contig825 193960..193968 -
1622932449.2616937-CDS-F-serratus_M_contig825:194520..1946821622932449.2616937-CDS-F-serratus_M_contig825:194520..194682Fucus serratus maleCDSF-serratus_M_contig825 194521..194682 -
1690964314.1982415-CDS-F-serratus_M_contig825:194520..1946821690964314.1982415-CDS-F-serratus_M_contig825:194520..194682Fucus serratus maleCDSF-serratus_M_contig825 194521..194682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig825.19648.1

>prot_F-serratus_M_contig825.19648.1 ID=prot_F-serratus_M_contig825.19648.1|Name=mRNA_F-serratus_M_contig825.19648.1|organism=Fucus serratus male|type=polypeptide|length=57bp
MGSKALVNSHPKKFGKGGRHCRVCSNQHGLIRKYGLNMCRQCFRVYATDI
GFTKFS*
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mRNA from alignment at F-serratus_M_contig825:193360..194700-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig825.19648.1 ID=mRNA_F-serratus_M_contig825.19648.1|Name=mRNA_F-serratus_M_contig825.19648.1|organism=Fucus serratus male|type=mRNA|length=1341bp|location=Sequence derived from alignment at F-serratus_M_contig825:193360..194700- (Fucus serratus male)
TCAGATCAGATACCAGATATGGGTTCCAAGGCTCTGGTCAACTCGCACCC
AAAGAAGTTCGGAAAGGGTGGACGCCACTGTCGCGTCTGCTCCAACCAGC
ACGGCTTGATCCGCAAGTACGGACTCAACATGTGCCGCCAGTGCTTCCGC
GTATACGCCACCGATATTGGCTTCACGAAGGTGAGGGGCGTAACAGTTAA
GGGATGAGTCTTTCGGCATAGCTTTTGATAATATATACGGTACCAGGTAT
CTAATACTAAGTTTAAAGAAAAAAGGTGAAGCGCCGAAACTTTGGAGCAC
ATCCCGGTGGAGTATATTTTACCCCAGATCAATAGAACATATGACATTAG
GCGTGGGCGGCGATCTAGCATGTATGGCCAAATAGCGCTCGCATGGTACC
AAATGCTATCTCATACGAAATAAATATATGGAATATGTACCTTGACATTA
TGCTATGATCGCCTGGTGGGAATCTAGAAGTTTGCTTTTGCATGATACAA
AAATTCAAACTTCGTTTTATCTGTGAGAGCAGCAGCGCCTAGGCTAGACT
CATGAAGATCGTCATTTCTATCCCACCGGCGAAGCGCGAGGCGCATGACT
TGCAGCTTCGTAAGTCTCGGTGGAGCGTTCAACGCGACTCGCTTTACCTC
AGCTTGTTTTACTATCGCACTCAGCGCCTCACTTTTGCCTCTGTGCCCGC
TTCGCTCTCCAATCGTCGTACGTTGTTATCAGTTCTCGTAGGTGTTGAGC
ACTAGGATTCGCAAGTTTTCCTGGAGGGTAGAGATATTGGCAGCAGCTGG
ATGTGATGGAGAGGGAGACTGAGTCGTAGACTCTGACTTGAAACAAATCC
ATCGATCCAAAAATTAACATGGCGTGTACAAAGGCGGGACGAGCATCACA
TGAGCCGTGCTGTCCCTTTTTTCTACCGCAGTTGCGGGTGACACTCTACG
ATCGTGTTGAGAGTCATTTGCCTCACTAGGCAACGATCATGTTCTACAGA
GACTGGTGAAATGTTCCCTTGGAAGACAAGGGGCCCGACTCGTACGACTT
GATCCAACATCCAACCGATCCCGTTCGCGTAGGGGGCCGTCGTTCTATTT
CGAGACCATACTTGCACCTGTCACGTCGGCTGTGTGGCGTATTTACCGTG
CGCCATTCCCTCACACGCCAGCCCACTGCTGCCTCTACCTGTTGACACGA
ATTCCTCGTCCAAACGCCTCTTTGCCGACTATTTGTTCTATTCATTTTAT
TTGGGTTCGATGTTGCCAAACACCGTCATGGTTATGCGGCGAAGAGCATC
AAGGAAGCATGATGATGAAACGCCAGTTTATTTATACACTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig825:193360..194700-

>mRNA_F-serratus_M_contig825.19648.1 ID=mRNA_F-serratus_M_contig825.19648.1|Name=mRNA_F-serratus_M_contig825.19648.1|organism=Fucus serratus male|type=CDS|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig825:193360..194700- (Fucus serratus male)
ATGGGTTCCAAGGCTCTGGTCAACTCGCACCCAAAGAAGTTCGGAAAGGG
TGGACGCCACTGTCGCGTCTGCTCCAACCAGCACGGCTTGATCCGCAAGT
ACGGACTCAACATGTGCCGCCAGTGCTTCCGCGTATACGCCACCGATATT
GGCTTCACGAAGATGGGTTCCAAGGCTCTGGTCAACTCGCACCCAAAGAA
GTTCGGAAAGGGTGGACGCCACTGTCGCGTCTGCTCCAACCAGCACGGCT
TGATCCGCAAGTACGGACTCAACATGTGCCGCCAGTGCTTCCGCGTATAC
GCCACCGATATTGGCTTCACGAAGTTCTCGTAGTTCTCGTAG
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