mRNA_F-serratus_M_contig824.19641.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig824.19641.1
Unique NamemRNA_F-serratus_M_contig824.19641.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig824.19641.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.500e-24
Identity = 129/419 (30.79%), Postives = 167/419 (39.86%), Query Frame = 1 
Query:  241 SAGMLRMDDVAAALETMMMRNAQLEFPNSTTSSTDSSSCQTSTPTPPHATLSSEASIS--------------GLSTP-TQAGDGGP---------RRRGVRFADE----LVAEAFESTDWWDDMVFGVDRCPSCGHLGTSAAAVADFSPNDTGNRNRGEESTEFSVCDHCGASYR---------TLPPGELLRFIDELSEGVEATLLEPIF--IGKKRTRVLFYTEDRGKSICWFETGSKHTREPYRLPCKSLEGVKDCSELASRKRKGRIAESRCR----RHG-----RLSAGDATAKSGVNSNYTATPLHVPQLEATSSSEVDDHLDTSETFNSATTASTPDEEATSGGATARVSQGGYAVGGGGPSGGGRDIRIKLRWRPKPTEHLKKVTIVDVRCSNPVAFTRGMLQLLEHNTDL 1353
            S+ M+ M DVA+ALE +    A     +S  S    +S  TS PTPP+ +     S S              G ++P + AG G           RR  VR++DE    LV +   +TD+W+ MV G   C +C                           TE +VCD CG   R         + PPGEL RFI ELS GVEATL+ P    I KKR  V+ YTED G+SICW +TG+  + EPYR+  K+L  VKD S   SR      AES  R     HG     R   G+    +                 AT                                                       +RI L+W P+PT   + V +VDV+ + P  FTRGM QLL  N+DL
Sbjct:    5 SSTMIDMSDVASALERVKKGRA-----DSANSLLSWASQGTSGPTPPYVSPHRRPSTSXXXXXXXXXXXXXXGATSPCSSAGCGNSFTSGLCASSRRGTVRWSDECGGELVTQVRTTTDFWEMMVLGDGGCCTCXXXXXXXXXXXXX--------------TE-TVCDGCGELRRRPGGDACCSSSPPGELFRFIAELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRSKTLLEVKDKSGAGSR------AESVARCGGGAHGVEGAFRSECGEQEEDARGXXXXXXXXXXXXXXXATG------------------------------------------------------VRINLKWLPQPTWSKRTVKLVDVQTACPGIFTRGMQQLLSFNSDL 343
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig824.19641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTP6_9PHAE1.500e-2430.79Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig824contigF-serratus_M_contig824:210048..213625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3486
Cds size1197
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig824.19641.1prot_F-serratus_M_contig824.19641.1Fucus serratus malepolypeptideF-serratus_M_contig824 210213..211409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932447.5642455-UTR-F-serratus_M_contig824:210047..2102121622932447.5642455-UTR-F-serratus_M_contig824:210047..210212Fucus serratus maleUTRF-serratus_M_contig824 210048..210212 +
1690964313.3514903-UTR-F-serratus_M_contig824:210047..2102121690964313.3514903-UTR-F-serratus_M_contig824:210047..210212Fucus serratus maleUTRF-serratus_M_contig824 210048..210212 +
1622932447.606061-UTR-F-serratus_M_contig824:211409..2115871622932447.606061-UTR-F-serratus_M_contig824:211409..211587Fucus serratus maleUTRF-serratus_M_contig824 211410..211587 +
1690964313.3802247-UTR-F-serratus_M_contig824:211409..2115871690964313.3802247-UTR-F-serratus_M_contig824:211409..211587Fucus serratus maleUTRF-serratus_M_contig824 211410..211587 +
1622932447.6206255-UTR-F-serratus_M_contig824:211635..2124341622932447.6206255-UTR-F-serratus_M_contig824:211635..212434Fucus serratus maleUTRF-serratus_M_contig824 211636..212434 +
1690964313.3939877-UTR-F-serratus_M_contig824:211635..2124341690964313.3939877-UTR-F-serratus_M_contig824:211635..212434Fucus serratus maleUTRF-serratus_M_contig824 211636..212434 +
1622932447.6352649-UTR-F-serratus_M_contig824:212449..2133831622932447.6352649-UTR-F-serratus_M_contig824:212449..213383Fucus serratus maleUTRF-serratus_M_contig824 212450..213383 +
1690964313.4069464-UTR-F-serratus_M_contig824:212449..2133831690964313.4069464-UTR-F-serratus_M_contig824:212449..213383Fucus serratus maleUTRF-serratus_M_contig824 212450..213383 +
1622932447.65279-UTR-F-serratus_M_contig824:213412..2136251622932447.65279-UTR-F-serratus_M_contig824:213412..213625Fucus serratus maleUTRF-serratus_M_contig824 213413..213625 +
1690964313.4165637-UTR-F-serratus_M_contig824:213412..2136251690964313.4165637-UTR-F-serratus_M_contig824:213412..213625Fucus serratus maleUTRF-serratus_M_contig824 213413..213625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932447.589113-CDS-F-serratus_M_contig824:210212..2114091622932447.589113-CDS-F-serratus_M_contig824:210212..211409Fucus serratus maleCDSF-serratus_M_contig824 210213..211409 +
1690964313.3700993-CDS-F-serratus_M_contig824:210212..2114091690964313.3700993-CDS-F-serratus_M_contig824:210212..211409Fucus serratus maleCDSF-serratus_M_contig824 210213..211409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig824.19641.1

>prot_F-serratus_M_contig824.19641.1 ID=prot_F-serratus_M_contig824.19641.1|Name=mRNA_F-serratus_M_contig824.19641.1|organism=Fucus serratus male|type=polypeptide|length=399bp
MTEATSKREQQVRGKKGEALVGDDTSAGMLRMDDVAAALETMMMRNAQLE
FPNSTTSSTDSSSCQTSTPTPPHATLSSEASISGLSTPTQAGDGGPRRRG
VRFADELVAEAFESTDWWDDMVFGVDRCPSCGHLGTSAAAVADFSPNDTG
NRNRGEESTEFSVCDHCGASYRTLPPGELLRFIDELSEGVEATLLEPIFI
GKKRTRVLFYTEDRGKSICWFETGSKHTREPYRLPCKSLEGVKDCSELAS
RKRKGRIAESRCRRHGRLSAGDATAKSGVNSNYTATPLHVPQLEATSSSE
VDDHLDTSETFNSATTASTPDEEATSGGATARVSQGGYAVGGGGPSGGGR
DIRIKLRWRPKPTEHLKKVTIVDVRCSNPVAFTRGMLQLLEHNTDLLK*
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mRNA from alignment at F-serratus_M_contig824:210048..213625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig824.19641.1 ID=mRNA_F-serratus_M_contig824.19641.1|Name=mRNA_F-serratus_M_contig824.19641.1|organism=Fucus serratus male|type=mRNA|length=3578bp|location=Sequence derived from alignment at F-serratus_M_contig824:210048..213625+ (Fucus serratus male)
ACTGTGCCGTAGACTAGATATATATATATTATTTTTACTCTTGCAGACTA
TAGCGATATTGGCACGGAGAGAGCGACACACGCACAGAGTACCACCAGAG
AGCATCACTACTGTTACTCACTCGATCGAAGCTTTACAGTTTTCGGCGCA
CACGGCAAAAGTACGATGACTGAGGCGACTAGTAAGCGAGAGCAGCAAGT
TCGCGGGAAGAAAGGGGAGGCCCTTGTTGGAGATGATACTTCAGCCGGGA
TGTTGAGGATGGACGATGTCGCGGCCGCCCTCGAGACAATGATGATGAGG
AATGCGCAACTCGAGTTTCCGAACAGTACCACCAGTAGCACGGACTCCTC
CTCCTGTCAAACATCGACTCCAACTCCACCCCATGCGACCCTATCCTCTG
AAGCATCGATATCCGGTTTGTCGACCCCGACACAAGCCGGTGACGGCGGA
CCCAGGCGCCGTGGCGTTCGCTTCGCCGACGAACTCGTCGCAGAAGCCTT
TGAGTCGACGGACTGGTGGGATGATATGGTATTCGGCGTCGACAGATGCC
CTAGCTGTGGCCACTTGGGAACGTCAGCAGCAGCAGTTGCCGATTTCAGC
CCAAATGACACGGGCAACCGGAATCGGGGAGAAGAATCGACGGAGTTTTC
CGTCTGTGACCATTGCGGAGCATCGTATAGGACACTTCCCCCCGGAGAGC
TCTTACGGTTTATCGATGAGCTGAGCGAGGGCGTGGAAGCGACCTTGCTG
GAGCCTATCTTTATCGGGAAGAAGAGAACAAGGGTATTGTTCTACACCGA
GGACAGAGGGAAATCGATATGCTGGTTCGAGACCGGGAGCAAACATACGC
GTGAACCATACCGCCTTCCCTGCAAGTCTCTGGAAGGGGTGAAGGACTGC
TCAGAGTTGGCAAGTAGAAAGCGGAAGGGGAGGATAGCGGAGTCGAGGTG
TCGAAGACATGGTCGGCTGTCGGCTGGTGATGCGACAGCGAAAAGCGGTG
TGAATTCGAATTATACAGCAACGCCTCTCCATGTGCCGCAACTTGAAGCG
ACATCATCCTCAGAAGTAGATGATCATCTGGACACCAGCGAGACTTTCAA
CTCGGCAACGACTGCTTCAACGCCCGACGAGGAAGCTACTAGCGGCGGAG
CCACGGCAAGGGTGTCACAGGGAGGTTACGCGGTGGGGGGTGGTGGCCCT
AGCGGTGGAGGGCGTGATATTCGCATCAAGCTACGGTGGCGTCCGAAGCC
AACAGAACATCTTAAAAAGGTGACCATCGTAGACGTGCGCTGCTCTAATC
CCGTCGCGTTCACTAGAGGAATGCTTCAGCTTCTAGAGCACAACACCGAT
CTCCTCAAGTAGAACACGATAAATCCGTACAGTACTCGCACGGCAGTCAG
TTTGGCCTCCTTTCAGGAAAAGCTTGTTCCGTTGTTGTGCAACAAGTCTA
ATGTATGTACAGACAGTATGCATGGTCATCACATGTATGTTATAGACTAT
ATAGACTATATACGTAGTTTTTTTTTTTGCATAGCATCAGGTGCCAGAAT
ATACGATGTCCAAGGGGTTTGTTTTTGCATAGCATCAGGTGCCAGAATGC
TAATGTCCGAAACACGATGTCCATTGTTCTGTCGGTCTGGCCATATGATT
CGCCGCAGTACGTGCTCTGTGTGGCGTGTAATATACGGTACTACTCTACT
GCCTGCGGTAGGACCACGGCAGTTTCTCGTCTCTTGGGCCAAAGTCGTAT
AGTTGGGCATTTATTTGGATTGCATATTTATCTGCGTCCCCCCCATTTCA
GCGAAGTACTGCGTGTGTGTACTTGTTGTATAAATAGCTGTAACGCGCGT
GCCCAGCCCTGCTGCTTCAGGTGGAAGCCTCGTAAAAGTGAAACGAGACT
ATCGTGAGGTATGATGACAGCGTAACAACATTTTTATTTTTTATGTTTTA
CTTTTGTGGACATTCGAGAACTTGTGACGTGTCCCCTCATCTCACTTTGC
CCATGTACAGTACCGAAGATAGATGTCGACACGTACAAGCCCGACATACC
ATCAGTGATGTATTATAGTACGCAGTAGCAGCAGTAATGTTCTAAAGAGC
AGTTAGTTGTTGATCGAATAGGCTGCTGTGCTCTTGAGAGCGAGTATGGT
ATAGCCAGCGTGCTTTTTCTTTTCATACATGCCTATCAGGCTCACGATAG
GGCGATCGGAGGACTTTTCGCCCCCGTCTCAGATAGCGCCTTCGATCTCG
CGCGATTCGTCTACGATGATACTGCCTGACGACACGACATGACATGATGT
GTCTTCTGGCGTATGCATCTTGTTTCTTTTTGGCTGTTCTTGGTTCGTGA
TTGTGGCGCGTCTTTCTCTCTCTGTCTTTCTCTCTCTGTCTCTCTCTCTC
AGCTGTTGTTGGCCGTCCTTTGGCATATGTTGGACTTATGTTCCCCTTAC
CGCCCTTCTTGCTGTGTGAAGTAGTCTGTGTGTGTGTGCTTGATGTACTC
CATTTACCATCCTTCGCTCGTCTGTCTCTCGTCCCTTATCTGTTGCCAAG
TGTAAAAGTTTGTCATCACGCGGCGGGCGGTTTGGTTCTCGTCGCCCTGC
TGTAGTGTATCCACGACGGACGGTGTGTGTGCGTGTTGGCTATTATTATT
GATCGCGGTCTGTTTTGGTGGGCCAGTCATACTCTGGAGCGATGCGATCT
AGTAGTAGTGCTCTGTTGCAAAGCCTGTTCCGTTCATGGCTGCTGGGCGC
GAGGAGAGAGTGCAAAGTGTTCAAAGCGTCACGACCGAGTGAGGAAGTTT
TGTGCCGGGGGGAGTTCCACGTAGAAAATGGTTTCTTCGGAGTGCAACTC
AACAGTAGTTTCACTACGATCGGTTACAAGTAGTCCGTTTCTCGAATTTC
CCCCACGAGTCGGTACTGTGTGGGGTATTTGTCGACGGCGTGCAGCGGGA
GAGTAGTCGCTGATACACTATTATAGCTCCTTGGGGCTTCATTAGATGTG
CCAGTCAGGCGTGCAGCGTTTTCCAACATAGAGCTACATATATATTTTCA
CCCTCTTTACTTTTTTAGGATTACGTATAACTACATAGCTTAGCGGCAGG
TGGGCGAAAGCGGGTCATCGTTGCTGCGGTTTTGTCTGTCTTGTGGTGTC
TAATAACCCATGTTACGCGCGGATGATGCAAGACAATGCGTTAGGATCTC
GTCGCGCTGTCGAACTTTTTTAGATTAGGAGCAAGAGCAAGAGCCGTGGT
GGTTTGCGGGGTTAGTTGTCGTGTGCTTCCCTAGTCTAGTCTATATAGTC
TAGCCTGCTATATTAGTCGACGCGGCCCGGTCCGGGGTTAAAGTGGTTGG
CTTTTATGGTGCAAGTAGACGTCATTTTGCAGGACGGGCAATGGTCTAGT
CTAATGCTGCATTGATAATAATGAGAAACTATCTTCAAATTTCGTCGAAG
CTGAGAACCTGATTCGTTCCCGCCTTGTGACATCGTATTTTATTGTGCAG
CATATACGTCGTTCGAGAGCGTGCTTGCACAGACGACTGGAAAAGAAAAA
AAAAAGCTGGGCGCTAACTCAAAATTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig824:210048..213625+

>mRNA_F-serratus_M_contig824.19641.1 ID=mRNA_F-serratus_M_contig824.19641.1|Name=mRNA_F-serratus_M_contig824.19641.1|organism=Fucus serratus male|type=CDS|length=2394bp|location=Sequence derived from alignment at F-serratus_M_contig824:210048..213625+ (Fucus serratus male)
ATGACTGAGGCGACTAGTAAGCGAGAGCAGCAAGTTCGCGGGAAGAAAGG
GGAGGCCCTTGTTGGAGATGATACTTCAGCCGGGATGTTGAGGATGGACG
ATGTCGCGGCCGCCCTCGAGACAATGATGATGAGGAATGCGCAACTCGAG
TTTCCGAACAGTACCACCAGTAGCACGGACTCCTCCTCCTGTCAAACATC
GACTCCAACTCCACCCCATGCGACCCTATCCTCTGAAGCATCGATATCCG
GTTTGTCGACCCCGACACAAGCCGGTGACGGCGGACCCAGGCGCCGTGGC
GTTCGCTTCGCCGACGAACTCGTCGCAGAAGCCTTTGAGTCGACGGACTG
GTGGGATGATATGGTATTCGGCGTCGACAGATGCCCTAGCTGTGGCCACT
TGGGAACGTCAGCAGCAGCAGTTGCCGATTTCAGCCCAAATGACACGGGC
AACCGGAATCGGGGAGAAGAATCGACGGAGTTTTCCGTCTGTGACCATTG
CGGAGCATCGTATAGGACACTTCCCCCCGGAGAGCTCTTACGGTTTATCG
ATGAGCTGAGCGAGGGCGTGGAAGCGACCTTGCTGGAGCCTATCTTTATC
GGGAAGAAGAGAACAAGGGTATTGTTCTACACCGAGGACAGAGGGAAATC
GATATGCTGGTTCGAGACCGGGAGCAAACATACGCGTGAACCATACCGCC
TTCCCTGCAAGTCTCTGGAAGGGGTGAAGGACTGCTCAGAGTTGGCAAGT
AGAAAGCGGAAGGGGAGGATAGCGGAGTCGAGGTGTCGAAGACATGGTCG
GCTGTCGGCTGGTGATGCGACAGCGAAAAGCGGTGTGAATTCGAATTATA
CAGCAACGCCTCTCCATGTGCCGCAACTTGAAGCGACATCATCCTCAGAA
GTAGATGATCATCTGGACACCAGCGAGACTTTCAACTCGGCAACGACTGC
TTCAACGCCCGACGAGGAAGCTACTAGCGGCGGAGCCACGGCAAGGGTGT
CACAGGGAGGTTACGCGGTGGGGGGTGGTGGCCCTAGCGGTGGAGGGCGT
GATATTCGCATCAAGCTACGGTGGCGTCCGAAGCCAACAGAACATCTTAA
AAAGGTGACCATCGTAGACGTGCGCTGCTCTAATCCCGTCGCGTTCACTA
GAGGAATGCTTCAGCTTCTAGAGCACAACACCGATCTCCTCAAGTAGATG
ACTGAGGCGACTAGTAAGCGAGAGCAGCAAGTTCGCGGGAAGAAAGGGGA
GGCCCTTGTTGGAGATGATACTTCAGCCGGGATGTTGAGGATGGACGATG
TCGCGGCCGCCCTCGAGACAATGATGATGAGGAATGCGCAACTCGAGTTT
CCGAACAGTACCACCAGTAGCACGGACTCCTCCTCCTGTCAAACATCGAC
TCCAACTCCACCCCATGCGACCCTATCCTCTGAAGCATCGATATCCGGTT
TGTCGACCCCGACACAAGCCGGTGACGGCGGACCCAGGCGCCGTGGCGTT
CGCTTCGCCGACGAACTCGTCGCAGAAGCCTTTGAGTCGACGGACTGGTG
GGATGATATGGTATTCGGCGTCGACAGATGCCCTAGCTGTGGCCACTTGG
GAACGTCAGCAGCAGCAGTTGCCGATTTCAGCCCAAATGACACGGGCAAC
CGGAATCGGGGAGAAGAATCGACGGAGTTTTCCGTCTGTGACCATTGCGG
AGCATCGTATAGGACACTTCCCCCCGGAGAGCTCTTACGGTTTATCGATG
AGCTGAGCGAGGGCGTGGAAGCGACCTTGCTGGAGCCTATCTTTATCGGG
AAGAAGAGAACAAGGGTATTGTTCTACACCGAGGACAGAGGGAAATCGAT
ATGCTGGTTCGAGACCGGGAGCAAACATACGCGTGAACCATACCGCCTTC
CCTGCAAGTCTCTGGAAGGGGTGAAGGACTGCTCAGAGTTGGCAAGTAGA
AAGCGGAAGGGGAGGATAGCGGAGTCGAGGTGTCGAAGACATGGTCGGCT
GTCGGCTGGTGATGCGACAGCGAAAAGCGGTGTGAATTCGAATTATACAG
CAACGCCTCTCCATGTGCCGCAACTTGAAGCGACATCATCCTCAGAAGTA
GATGATCATCTGGACACCAGCGAGACTTTCAACTCGGCAACGACTGCTTC
AACGCCCGACGAGGAAGCTACTAGCGGCGGAGCCACGGCAAGGGTGTCAC
AGGGAGGTTACGCGGTGGGGGGTGGTGGCCCTAGCGGTGGAGGGCGTGAT
ATTCGCATCAAGCTACGGTGGCGTCCGAAGCCAACAGAACATCTTAAAAA
GGTGACCATCGTAGACGTGCGCTGCTCTAATCCCGTCGCGTTCACTAGAG
GAATGCTTCAGCTTCTAGAGCACAACACCGATCTCCTCAAGTAG
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