mRNA_F-serratus_M_contig824.19639.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig824.19639.1
Unique NamemRNA_F-serratus_M_contig824.19639.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig824.19639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig824contigF-serratus_M_contig824:157555..157926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932446.9680114-UTR-F-serratus_M_contig824:157554..1575751622932446.9680114-UTR-F-serratus_M_contig824:157554..157575Fucus serratus maleUTRF-serratus_M_contig824 157555..157575 +
1690964313.0337903-UTR-F-serratus_M_contig824:157554..1575751690964313.0337903-UTR-F-serratus_M_contig824:157554..157575Fucus serratus maleUTRF-serratus_M_contig824 157555..157575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932446.983205-CDS-F-serratus_M_contig824:157575..1579261622932446.983205-CDS-F-serratus_M_contig824:157575..157926Fucus serratus maleCDSF-serratus_M_contig824 157576..157926 +
1690964313.0435345-CDS-F-serratus_M_contig824:157575..1579261690964313.0435345-CDS-F-serratus_M_contig824:157575..157926Fucus serratus maleCDSF-serratus_M_contig824 157576..157926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig824.19639.1prot_F-serratus_M_contig824.19639.1Fucus serratus malepolypeptideF-serratus_M_contig824 157576..157926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig824.19639.1

>prot_F-serratus_M_contig824.19639.1 ID=prot_F-serratus_M_contig824.19639.1|Name=mRNA_F-serratus_M_contig824.19639.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MGNSPPRAEVAIANEVGGAPGENARGMPPPRGAADAAGVAGGAMGAASER
GYFVCSLALIRSMFCSSFFISARMASASLSDIVIVLYTHLLSQPLGAVSA
LHSLSSLLDSSRCTRPF
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mRNA from alignment at F-serratus_M_contig824:157555..157926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig824.19639.1 ID=mRNA_F-serratus_M_contig824.19639.1|Name=mRNA_F-serratus_M_contig824.19639.1|organism=Fucus serratus male|type=mRNA|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig824:157555..157926+ (Fucus serratus male)
GATATTGCCGGCGGCGTTGTGATGGGTAATTCGCCGCCGCGTGCAGAGGT
TGCCATTGCCAACGAAGTAGGTGGCGCTCCAGGTGAAAACGCGAGAGGAA
TGCCACCCCCACGCGGAGCTGCTGACGCCGCCGGTGTTGCTGGCGGTGCT
ATGGGTGCTGCATCCGAAAGGGGATATTTTGTCTGCAGCCTTGCTTTGAT
ACGTTCTATGTTCTGCTCTAGCTTTTTTATTTCGGCTCGTATGGCCTCAG
CTTCTTTGTCCGACATAGTCATTGTACTCTACACTCACTTGCTTTCCCAG
CCCCTCGGCGCTGTCTCAGCTTTACACTCTCTCTCGTCTCTTCTCGATTC
CTCTCGCTGCACCCGTCCTTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig824:157555..157926+

>mRNA_F-serratus_M_contig824.19639.1 ID=mRNA_F-serratus_M_contig824.19639.1|Name=mRNA_F-serratus_M_contig824.19639.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig824:157555..157926+ (Fucus serratus male)
ATGGGTAATTCGCCGCCGCGTGCAGAGGTTGCCATTGCCAACGAAGTAGG
TGGCGCTCCAGGTGAAAACGCGAGAGGAATGCCACCCCCACGCGGAGCTG
CTGACGCCGCCGGTGTTGCTGGCGGTGCTATGGGTGCTGCATCCGAAAGG
GGATATTTTGTCTGCAGCCTTGCTTTGATACGTTCTATGTTCTGCTCTAG
CTTTTTTATTTCGGCTCGTATGGCCTCAGCTTCTTTGTCCGACATAGTCA
TTGTACTCTACACTCACTTGCTTTCCCAGCCCCTCGGCGCTGTCTCAGCT
TTACACTCTCTCTCGTCTCTTCTCGATTCCTCTCGCTGCACCCGTCCTTT
CATGGGTAATTCGCCGCCGCGTGCAGAGGTTGCCATTGCCAACGAAGTAG
GTGGCGCTCCAGGTGAAAACGCGAGAGGAATGCCACCCCCACGCGGAGCT
GCTGACGCCGCCGGTGTTGCTGGCGGTGCTATGGGTGCTGCATCCGAAAG
GGGATATTTTGTCTGCAGCCTTGCTTTGATACGTTCTATGTTCTGCTCTA
GCTTTTTTATTTCGGCTCGTATGGCCTCAGCTTCTTTGTCCGACATAGTC
ATTGTACTCTACACTCACTTGCTTTCCCAGCCCCTCGGCGCTGTCTCAGC
TTTACACTCTCTCTCGTCTCTTCTCGATTCCTCTCGCTGCACCCGTCCTT
TC
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