mRNA_F-serratus_M_contig823.19631.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig823.19631.1
Unique NamemRNA_F-serratus_M_contig823.19631.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig823.19631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig823contigF-serratus_M_contig823:206530..209769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size578
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig823.19631.1prot_F-serratus_M_contig823.19631.1Fucus serratus malepolypeptideF-serratus_M_contig823 209377..209769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932445.4697294-UTR-F-serratus_M_contig823:206529..2066131622932445.4697294-UTR-F-serratus_M_contig823:206529..206613Fucus serratus maleUTRF-serratus_M_contig823 206530..206613 +
1690964312.2783601-UTR-F-serratus_M_contig823:206529..2066131690964312.2783601-UTR-F-serratus_M_contig823:206529..206613Fucus serratus maleUTRF-serratus_M_contig823 206530..206613 +
1622932445.4900656-UTR-F-serratus_M_contig823:209276..2093761622932445.4900656-UTR-F-serratus_M_contig823:209276..209376Fucus serratus maleUTRF-serratus_M_contig823 209277..209376 +
1690964312.288702-UTR-F-serratus_M_contig823:209276..2093761690964312.288702-UTR-F-serratus_M_contig823:209276..209376Fucus serratus maleUTRF-serratus_M_contig823 209277..209376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932445.5069985-CDS-F-serratus_M_contig823:209376..2097691622932445.5069985-CDS-F-serratus_M_contig823:209376..209769Fucus serratus maleCDSF-serratus_M_contig823 209377..209769 +
1690964312.3012373-CDS-F-serratus_M_contig823:209376..2097691690964312.3012373-CDS-F-serratus_M_contig823:209376..209769Fucus serratus maleCDSF-serratus_M_contig823 209377..209769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig823.19631.1

>prot_F-serratus_M_contig823.19631.1 ID=prot_F-serratus_M_contig823.19631.1|Name=mRNA_F-serratus_M_contig823.19631.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MSSSGRGGGQRGRGGKDGGGSADRQSSTRGRSRSSRSGRSNRGPKQSTAS
SRGSPAPVSESLSEQSLSSSTLPPPPSPAAGTGRREDGLVPGAGLLALQA
LAAAQNKTTVGTDGTVGSAIPVAVAKAAEKA
back to top

mRNA from alignment at F-serratus_M_contig823:206530..209769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig823.19631.1 ID=mRNA_F-serratus_M_contig823.19631.1|Name=mRNA_F-serratus_M_contig823.19631.1|organism=Fucus serratus male|type=mRNA|length=3240bp|location=Sequence derived from alignment at F-serratus_M_contig823:206530..209769+ (Fucus serratus male)
TTTACGCTGGTTGCTACATTTCGTCTGTTCTACTCCCGGACTCCAGCCTC
GCCGATCTTCCACGACGACACAGGATTTATTGAGGTATGTTTACTGGTGC
ATGCCCAATCCGCGTCAGACAATCAGCCGCGTAGACTCCCGCCGTTCCCC
GTCAGCTGTGCCAACCCGTCGACATTACAGCTTGCGCACGATACCTCAAG
CGTTCATATTTTTCTTTAAACAAAGGTTTACCACTCCAGCGAATAATACC
GAAAAGTTTGGGATAGTGGTAACATCTACCTGGTGTTGAAGAGAGCAATG
CATTCGTTAAACTACCACTCGTCAACATTTAGTGCGAGCACAAGTACCGT
CTGTACATGACAAGTACTGTGCCAGGCTTTACAGGTACCGTACCAGGTAC
ACAGTACAACAGATGTACACTTCGCACCAAAACGTTCACACGCCCTCTCA
ATAACCAGCAACTTCATGCCCACAGTCAGTACAGACCCTCGTAGCAGTGG
TGTTATCCAGTTCCAACATTTCATGGGTCAAGTAGTGTTCACGGTTCCAG
CTATACTCCCTCGTACGACCAAAATAGTACCGCGCTCGATCACACCAAGT
TTTGACAAGTCAAAAGCAAATTACAAAAATGGCGTTCTTTCCCAACATTT
CACTCTTCGTTCCTTGTTAAAAGAAAGAAAGCGCCGGGTAGCTATCATAC
AGCGCCACCCGCACCGACCCTCTGTAGGGTGAAAATCAAAATCACACCAA
GTTTTGACATGAAATACATACCAGGGTATGGAAATTAGAAATTAACGGGT
GGGGACAGAGGAGGTTTTCACCAAAATGGCGTTATTTCCCAACATTTCAC
TCTTCGTTCCTTGTTATAAAAAAGAAAGAAAGCTCCGGGTAGCTACAGTA
CCACCCGCACTGTTCTACGTGAAAGCATCGCATCCAAGTACCCGTATGTC
ACTTACTATACCAATAATTAAACAGACAAAATGTGACTTCTACCTAACCC
TAGTACTGTAAAACGTAAATAGACCATCCTACGAACTGGGATTTTGCCCA
ACACGTGGAGAACGATTGATTCGTTGGTACACAAAATTCGACTTCACGAT
CGACGAGGGAAAGGAACGGCTGAATCCTTATCGCGAGAAAAATTAAGGCA
AACACCGCGCAAACCCTCGCTAGATCGTTAAAAAATATTGCCAGATGGCT
GAGACAATGTTTTTTTCCGACTAGCTAATTAGATAAAATTTACTGTAACC
AAAGTACAACGATACAGTTAGATAGTCCCGCGCTGCATTGAGAAGATCCA
AGGAAGAATGGCGTCGTTCAAGATGACGACCGTCGGAAAGGAAAAAAAAA
GACACGGAGTTGAAGGCATTTCGGGTCAACGTATGGTGGATTACACGAGT
TGGTTTGAGGCCCTCTTGATCACTTTTGACAAACAGACGCTCTTCCCTTT
GTGTTTCTGACCAACGCGGGGTCATAGCTAAGTTCGAGCATGAGGAGCAT
CTGTGCGTCGTAGCCCTGACAAGTTGGAGCGAGGAACTCAGTTCTTTCCG
CGTGCCTCTTACCTCCTTGTGTGATCGCCTACTGCTTTTCGTCTACTTCC
AGGTGAATACGGATTCGTGTACTTGGATTATGCCTACATCGCCGTGGTCC
TCTGTAATCGTTTCAAATGTTGTATTGGATTCGTCTTTATTGTTTGATGA
TGTACTACTGTTGTTTTGTCTTGGCTGTTTTTATGGTGTCCCTGCATGGC
GATCAATGTAAGTGTACAGTACAACGGTGGGCTTCTCCCCGATATTATAC
TGTTGACCCAACGGCCCTACCATAGGGGAACCCGTTTGAATGCCATGAAG
AGGTTTTGTATTTGCAGCCTTTGAGCCGACCTGAACATTTTGACATTTTT
TCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGTATTTTC
TTCAAAGGTGGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCT
GGCATGTCCACAAACCTGACGTCCAGAATAAATGGAACGACAACACACAA
CACACACTGCAGGGTTAAAATAAAAAATATGTATCAGCCGTGCGATCGAG
GCAGGTCTTCATTGGTACGACACGTAAAATGTTCACACGTCGCGTCTGAT
CAGACGTTTTCGTAGTAAGTATCATTGTTCCCTTAATACCCAGTGGGAGG
ATCAAGGCGAGTGGCATAGAATGACTAGGATGACAAGGCCGGATTGCGCG
GTTATGTGCAATTTAATAAACACACACACACACACACACACACACACACA
CACCTCCTACACCCTGTGGTAAGCCCCATATTCTCTCAAAGGGTTGAAGC
ACGGGGACAATGTAAATACATGAGAGAAATCTTGGATAGGGGCATTGTTT
AAACGGCTTGCAATGGACATGAAGTACAGGCGTATCTCGCATCATGGAAA
CATGGTAGACGGAGAACAGCGCAATGTCGCACTTCAATGCCACGTAAAGA
CGGGCTCAAGCGAGCTTTCAACGCACCAAACGGCACTGACTTTGTTTTCA
GTGCACTCGGCGTCGTTCCGGGAAAACTTCGAGCGCAGCGCACGAAGTGC
CAAAGTACAACGCGAGCAAGCTCCTCCAAGTCAATCATACCACCTAAAGG
TTTCTCTAAAATATGCCCAAGCTACGAGATACCTGGTATTCAGCTGCCCA
CTCTCACTTGACCTTCGCCGCCGCGTCCTTTTTTCCTCCTCTGCAAGTAT
AAAAACCGTCAACCGGAGGGGCTGTGCGTTGTGGAGGACACCACTTACAA
CTCGCGTCGATAAGAGATAATAACGCGTCGCGCCTATTGCTAAAACGATG
AGCTCCAGTGGGCGTGGTGGAGGACAACGCGGGAGGGGTGGCAAGGACGG
GGGCGGAAGCGCTGACAGACAGAGCAGCACCCGTGGGCGTAGCCGATCGT
CGAGGAGTGGCCGGAGCAATCGAGGACCAAAGCAGTCAACGGCTTCCAGC
AGGGGTTCCCCCGCCCCCGTCTCGGAATCTTTGTCAGAACAGTCCCTATC
GTCGTCGACCCTTCCGCCGCCACCTTCCCCAGCTGCTGGTACGGGAAGAC
GGGAAGATGGTCTCGTCCCTGGGGCTGGTCTCCTCGCCCTCCAGGCTCTA
GCTGCCGCTCAAAACAAAACCACGGTGGGGACCGACGGAACCGTGGGAAG
CGCGATCCCCGTCGCGGTGGCGAAAGCGGCGGAGAAGGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig823:206530..209769+

>mRNA_F-serratus_M_contig823.19631.1 ID=mRNA_F-serratus_M_contig823.19631.1|Name=mRNA_F-serratus_M_contig823.19631.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig823:206530..209769+ (Fucus serratus male)
ATGAGCTCCAGTGGGCGTGGTGGAGGACAACGCGGGAGGGGTGGCAAGGA
CGGGGGCGGAAGCGCTGACAGACAGAGCAGCACCCGTGGGCGTAGCCGAT
CGTCGAGGAGTGGCCGGAGCAATCGAGGACCAAAGCAGTCAACGGCTTCC
AGCAGGGGTTCCCCCGCCCCCGTCTCGGAATCTTTGTCAGAACAGTCCCT
ATCGTCGTCGACCCTTCCGCCGCCACCTTCCCCAGCTGCTGGTACGGGAA
GACGGGAAGATGGTCTCGTCCCTGGGGCTGGTCTCCTCGCCCTCCAGGCT
CTAGCTGCCGCTCAAAACAAAACCACGGTGGGGACCGACGGAACCGTGGG
AAGCGCGATCCCCGTCGCGGTGGCGAAAGCGGCGGAGAAGGCGATGAGCT
CCAGTGGGCGTGGTGGAGGACAACGCGGGAGGGGTGGCAAGGACGGGGGC
GGAAGCGCTGACAGACAGAGCAGCACCCGTGGGCGTAGCCGATCGTCGAG
GAGTGGCCGGAGCAATCGAGGACCAAAGCAGTCAACGGCTTCCAGCAGGG
GTTCCCCCGCCCCCGTCTCGGAATCTTTGTCAGAACAGTCCCTATCGTCG
TCGACCCTTCCGCCGCCACCTTCCCCAGCTGCTGGTACGGGAAGACGGGA
AGATGGTCTCGTCCCTGGGGCTGGTCTCCTCGCCCTCCAGGCTCTAGCTG
CCGCTCAAAACAAAACCACGGTGGGGACCGACGGAACCGTGGGAAGCGCG
ATCCCCGTCGCGGTGGCGAAAGCGGCGGAGAAGGCG
back to top