mRNA_F-serratus_M_contig823.19629.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig823.19629.1
Unique NamemRNA_F-serratus_M_contig823.19629.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig823.19629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig823contigF-serratus_M_contig823:195510..195877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932445.415291-CDS-F-serratus_M_contig823:195509..1958751622932445.415291-CDS-F-serratus_M_contig823:195509..195875Fucus serratus maleCDSF-serratus_M_contig823 195510..195875 +
1690964312.2676637-CDS-F-serratus_M_contig823:195509..1958751690964312.2676637-CDS-F-serratus_M_contig823:195509..195875Fucus serratus maleCDSF-serratus_M_contig823 195510..195875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig823.19629.1prot_F-serratus_M_contig823.19629.1Fucus serratus malepolypeptideF-serratus_M_contig823 195510..195875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig823.19629.1

>prot_F-serratus_M_contig823.19629.1 ID=prot_F-serratus_M_contig823.19629.1|Name=mRNA_F-serratus_M_contig823.19629.1|organism=Fucus serratus male|type=polypeptide|length=122bp
PFFRCCSRRRGRRGLATLPLRADACFLTFLPGCLLRSNSSCGFRLLGCAA
LSVDASFPTILRPAISRWYFRPVPHRCKPCTLGRGCASPFRSGPGARSSR
AWRCFDGRIDLGRGGSRLDVPV
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mRNA from alignment at F-serratus_M_contig823:195510..195877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig823.19629.1 ID=mRNA_F-serratus_M_contig823.19629.1|Name=mRNA_F-serratus_M_contig823.19629.1|organism=Fucus serratus male|type=mRNA|length=368bp|location=Sequence derived from alignment at F-serratus_M_contig823:195510..195877+ (Fucus serratus male)
CCGTTTTTTCGGTGTTGTAGTCGACGGCGTGGACGACGCGGCCTTGCCAC
CCTTCCCCTTCGCGCCGACGCCTGCTTTCTTACCTTTCTTCCCGGTTGTC
TTCTTCGGAGCAACTCCAGTTGTGGGTTTCGCTTGCTCGGGTGTGCTGCT
TTGTCCGTCGACGCCTCCTTCCCCACCATCCTGCGCCCGGCCATCTCCCG
CTGGTATTTTAGACCCGTTCCCCACCGGTGTAAGCCCTGCACCCTTGGGC
GAGGATGCGCCAGTCCTTTTAGGTCTGGTCCTGGGGCTCGCTCTTCCCGC
GCTTGGCGGTGCTTTGACGGCAGGATCGATCTTGGCAGAGGGGGATCCCG
CCTTGATGTCCCCGTCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig823:195510..195877+

>mRNA_F-serratus_M_contig823.19629.1 ID=mRNA_F-serratus_M_contig823.19629.1|Name=mRNA_F-serratus_M_contig823.19629.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig823:195510..195877+ (Fucus serratus male)
CCGTTTTTTCGGTGTTGTAGTCGACGGCGTGGACGACGCGGCCTTGCCAC
CCTTCCCCTTCGCGCCGACGCCTGCTTTCTTACCTTTCTTCCCGGTTGTC
TTCTTCGGAGCAACTCCAGTTGTGGGTTTCGCTTGCTCGGGTGTGCTGCT
TTGTCCGTCGACGCCTCCTTCCCCACCATCCTGCGCCCGGCCATCTCCCG
CTGGTATTTTAGACCCGTTCCCCACCGGTGTAAGCCCTGCACCCTTGGGC
GAGGATGCGCCAGTCCTTTTAGGTCTGGTCCTGGGGCTCGCTCTTCCCGC
GCTTGGCGGTGCTTTGACGGCAGGATCGATCTTGGCAGAGGGGGATCCCG
CCTTGATGTCCCCGTCCCGTTTTTTCGGTGTTGTAGTCGACGGCGTGGAC
GACGCGGCCTTGCCACCCTTCCCCTTCGCGCCGACGCCTGCTTTCTTACC
TTTCTTCCCGGTTGTCTTCTTCGGAGCAACTCCAGTTGTGGGTTTCGCTT
GCTCGGGTGTGCTGCTTTGTCCGTCGACGCCTCCTTCCCCACCATCCTGC
GCCCGGCCATCTCCCGCTGGTATTTTAGACCCGTTCCCCACCGGTGTAAG
CCCTGCACCCTTGGGCGAGGATGCGCCAGTCCTTTTAGGTCTGGTCCTGG
GGCTCGCTCTTCCCGCGCTTGGCGGTGCTTTGACGGCAGGATCGATCTTG
GCAGAGGGGGATCCCGCCTTGATGTCCCCGTC
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