mRNA_F-serratus_M_contig823.19628.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig823.19628.1
Unique NamemRNA_F-serratus_M_contig823.19628.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig823.19628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig823contigF-serratus_M_contig823:191577..193356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size951
Cds size951
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig823.19628.1prot_F-serratus_M_contig823.19628.1Fucus serratus malepolypeptideF-serratus_M_contig823 191577..193356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932445.2747521-CDS-F-serratus_M_contig823:191576..1917141622932445.2747521-CDS-F-serratus_M_contig823:191576..191714Fucus serratus maleCDSF-serratus_M_contig823 191577..191714 -
1690964312.2097256-CDS-F-serratus_M_contig823:191576..1917141690964312.2097256-CDS-F-serratus_M_contig823:191576..191714Fucus serratus maleCDSF-serratus_M_contig823 191577..191714 -
1622932445.2932682-CDS-F-serratus_M_contig823:192241..1925591622932445.2932682-CDS-F-serratus_M_contig823:192241..192559Fucus serratus maleCDSF-serratus_M_contig823 192242..192559 -
1690964312.2269163-CDS-F-serratus_M_contig823:192241..1925591690964312.2269163-CDS-F-serratus_M_contig823:192241..192559Fucus serratus maleCDSF-serratus_M_contig823 192242..192559 -
1622932445.368321-CDS-F-serratus_M_contig823:192861..1933561622932445.368321-CDS-F-serratus_M_contig823:192861..193356Fucus serratus maleCDSF-serratus_M_contig823 192862..193356 -
1690964312.2467778-CDS-F-serratus_M_contig823:192861..1933561690964312.2467778-CDS-F-serratus_M_contig823:192861..193356Fucus serratus maleCDSF-serratus_M_contig823 192862..193356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig823.19628.1

>prot_F-serratus_M_contig823.19628.1 ID=prot_F-serratus_M_contig823.19628.1|Name=mRNA_F-serratus_M_contig823.19628.1|organism=Fucus serratus male|type=polypeptide|length=317bp
NNTGKNLTSKEVGNEKGKKKKKKKTSGADSGQDTKKDKISGSKPASDEKG
GSGGGDDDRAIHDSSGGGKSAKASKSDKKSGSANGKQSEKGTKSKNNSGK
GAADKKSLKATKVPALKTKVVKGGSSKISGASSPGKGGEKFKAKDKPPKD
KKSKREEKREKGGRPILYQDLAMDREIFGGRGTLSVVGGRGDVGRVDRHR
VEKSYAAHADPLYRKGGGDSSGRGGKGGKDSHRVREDFKDYAAVVRKQKR
RGRDSDPVEPRERGRSHRDPKTQRGVGADDKSSSRHQSGDTAGRRGHSPA
SASQSSRTREASRDRNR
back to top

mRNA from alignment at F-serratus_M_contig823:191577..193356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig823.19628.1 ID=mRNA_F-serratus_M_contig823.19628.1|Name=mRNA_F-serratus_M_contig823.19628.1|organism=Fucus serratus male|type=mRNA|length=1780bp|location=Sequence derived from alignment at F-serratus_M_contig823:191577..193356- (Fucus serratus male)
AACAACACTGGGAAGAATTTGACGAGCAAGGAAGTGGGCAACGAGAAGGG
CAAGAAAAAGAAAAAAAAGAAGACGTCTGGTGCCGACTCAGGGCAAGACA
CTAAAAAGGACAAGATATCGGGTTCCAAGCCAGCGAGCGACGAAAAAGGC
GGTAGTGGTGGAGGTGATGACGACCGAGCTATCCATGACTCATCCGGTGG
CGGCAAGTCGGCAAAGGCGTCCAAGTCTGACAAAAAGTCTGGGAGCGCGA
ACGGTAAGCAGAGCGAGAAGGGCACTAAATCAAAGAACAACAGCGGTAAA
GGAGCGGCTGACAAGAAGAGCCTTAAGGCGACGAAGGTGCCTGCGTTGAA
AACTAAAGTCGTAAAAGGCGGGAGTTCTAAGATATCGGGGGCGTCCTCGC
CCGGCAAAGGCGGGGAGAAGTTCAAGGCGAAGGACAAGCCTCCCAAGGAT
AAGAAATCGAAGAGGGAAGAGAAGCGAGAAAAGGGAGGGCGACCGGTGAG
GCGTAGCGGTGGCGGCAAAACCGACCAAGCTCTTGCTGCGGGGGTGTCTA
GTAAAGCACATGTCACGGGTCAGCCCTTTTCTGCCGCACGCTTCTCGCAC
CGTTCAGAAAAGGGTTCAATAATGTCTACGTAGGCAGTTGGGCCATTCAC
GAGCTCGACGTTGGGGGAGCCGAATGGGGCTAAGCTAGGCTTTCGTTCGA
AATATCCTTTACTTAGATTTTATATACCAGTATATTTTTCCCCTCCATCA
CCTGTTCCCTCCGCGAACCATCGCGTGGCGGTCCTGACGATGCCCAGATC
CTATACCAAGATTTAGCGATGGACCGTGAAATCTTCGGCGGGCGTGGTAC
CCTCAGCGTTGTTGGCGGCAGGGGCGATGTCGGTCGAGTTGACCGTCATC
GAGTGGAGAAAAGCTACGCGGCCCACGCGGACCCGCTGTACAGGAAGGGC
GGCGGTGATTCGAGTGGGCGTGGTGGGAAAGGCGGGAAAGACTCCCACCG
CGTCCGCGAAGATTTCAAGGATTACGCCGCGGTTGTGCGAAAGCAAAAAC
GTCGCGGGCGGGACAGCGACCCGGTGGAGCCTAGGGAACGGGGAAGATCT
CATCGCGACCCCAAGGTAAATATAGATTGCGCGCTTAAATGGCTCTTGTT
AGACTCCTTGGTCTCTTTCTTCGTTCTCTATGTTGAGGTGAAGTACGTCC
ACCGGGTACGAGTATAAAGTCGCGCTGTGGCCGAGGAATAGACGGAATAT
GGTATACGATGCTTGATTTGGGATTGCCGACATCAGTGCACCGTGCCGAA
CTCTGTTTATTGCCTCTTCAAAGTTTGTCTGTAATACCCGCTCTTGGAAA
CATGATACCGTAGCAAGGAAATCGCCGATGAAGCAAGCTAGACGCAATCA
AGATATTTTTGCCCTGTATGCGCCAAGTCATTGCGCCGCAATGAACTGCC
AAGTTTCTATTGCTTTCTTCCATTGGATTTGCTGATTTGATTGTCATTTG
ATTGTCATTTGATGTCATTTGATTGTCATTTGAATGTCATTTGATTGTCA
TTTGAATGTCATTTGATTGTCATTTGAATGTCATTTGATTGCCATTTGAT
TACCATTTGACTTGTCTGCTCACTCGCTTCACCACGTTGCAGACTCAGCG
TGGCGTCGGTGCGGACGACAAGTCGTCTTCACGGCACCAGTCTGGTGACA
CTGCTGGTCGCCGAGGCCACTCCCCGGCGAGTGCGTCACAAAGCTCCAGG
ACGCGGGAAGCAAGCCGAGACCGCAACCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig823:191577..193356-

>mRNA_F-serratus_M_contig823.19628.1 ID=mRNA_F-serratus_M_contig823.19628.1|Name=mRNA_F-serratus_M_contig823.19628.1|organism=Fucus serratus male|type=CDS|length=1902bp|location=Sequence derived from alignment at F-serratus_M_contig823:191577..193356- (Fucus serratus male)
AACAACACTGGGAAGAATTTGACGAGCAAGGAAGTGGGCAACGAGAAGGG
CAAGAAAAAGAAAAAAAAGAAGACGTCTGGTGCCGACTCAGGGCAAGACA
CTAAAAAGGACAAGATATCGGGTTCCAAGCCAGCGAGCGACGAAAAAGGC
GGTAGTGGTGGAGGTGATGACGACCGAGCTATCCATGACTCATCCGGTGG
CGGCAAGTCGGCAAAGGCGTCCAAGTCTGACAAAAAGTCTGGGAGCGCGA
ACGGTAAGCAGAGCGAGAAGGGCACTAAATCAAAGAACAACAGCGGTAAA
GGAGCGGCTGACAAGAAGAGCCTTAAGGCGACGAAGGTGCCTGCGTTGAA
AACTAAAGTCGTAAAAGGCGGGAGTTCTAAGATATCGGGGGCGTCCTCGC
CCGGCAAAGGCGGGGAGAAGTTCAAGGCGAAGGACAAGCCTCCCAAGGAT
AAGAAATCGAAGAGGGAAGAGAAGCGAGAAAAGGGAGGGCGACCGAACAA
CACTGGGAAGAATTTGACGAGCAAGGAAGTGGGCAACGAGAAGGGCAAGA
AAAAGAAAAAAAAGAAGACGTCTGGTGCCGACTCAGGGCAAGACACTAAA
AAGGACAAGATATCGGGTTCCAAGCCAGCGAGCGACGAAAAAGGCGGTAG
TGGTGGAGGTGATGACGACCGAGCTATCCATGACTCATCCGGTGGCGGCA
AGTCGGCAAAGGCGTCCAAGTCTGACAAAAAGTCTGGGAGCGCGAACGGT
AAGCAGAGCGAGAAGGGCACTAAATCAAAGAACAACAGCGGTAAAGGAGC
GGCTGACAAGAAGAGCCTTAAGGCGACGAAGGTGCCTGCGTTGAAAACTA
AAGTCGTAAAAGGCGGGAGTTCTAAGATATCGGGGGCGTCCTCGCCCGGC
AAAGGCGGGGAGAAGTTCAAGGCGAAGGACAAGCCTCCCAAGGATAAGAA
ATCGAAGAGGGAAGAGAAGCGAGAAAAGGGAGGGCGACCGATCCTATACC
AAGATTTAGCGATGGACCGTGAAATCTTCGGCGGGCGTGGTACCCTCAGC
GTTGTTGGCGGCAGGGGCGATGTCGGTCGAGTTGACCGTCATCGAGTGGA
GAAAAGCTACGCGGCCCACGCGGACCCGCTGTACAGGAAGGGCGGCGGTG
ATTCGAGTGGGCGTGGTGGGAAAGGCGGGAAAGACTCCCACCGCGTCCGC
GAAGATTTCAAGGATTACGCCGCGGTTGTGCGAAAGCAAAAACGTCGCGG
GCGGGACAGCGACCCGGTGGAGCCTAGGGAACGGGGAAGATCTCATCGCG
ACCCCAAGATCCTATACCAAGATTTAGCGATGGACCGTGAAATCTTCGGC
GGGCGTGGTACCCTCAGCGTTGTTGGCGGCAGGGGCGATGTCGGTCGAGT
TGACCGTCATCGAGTGGAGAAAAGCTACGCGGCCCACGCGGACCCGCTGT
ACAGGAAGGGCGGCGGTGATTCGAGTGGGCGTGGTGGGAAAGGCGGGAAA
GACTCCCACCGCGTCCGCGAAGATTTCAAGGATTACGCCGCGGTTGTGCG
AAAGCAAAAACGTCGCGGGCGGGACAGCGACCCGGTGGAGCCTAGGGAAC
GGGGAAGATCTCATCGCGACCCCAAGACTCAGCGTGGCGTCGGTGCGGAC
GACAAGTCGTCTTCACGGCACCAGTCTGGTGACACTGCTGGTCGCCGAGG
CCACTCCCCGGCGAGTGCGTCACAAAGCTCCAGGACGCGGGAAGCAAGCC
GAGACCGCAACCGAACTCAGCGTGGCGTCGGTGCGGACGACAAGTCGTCT
TCACGGCACCAGTCTGGTGACACTGCTGGTCGCCGAGGCCACTCCCCGGC
GAGTGCGTCACAAAGCTCCAGGACGCGGGAAGCAAGCCGAGACCGCAACC
GA
back to top