mRNA_F-serratus_M_contig8214.19619.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8214.19619.1
Unique NamemRNA_F-serratus_M_contig8214.19619.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: UPI0003F071FC (uncharacterized protein LOC100379030 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F071FC)

HSP 1 Score: 187 bits (475), Expect = 4.290e-52
Identity = 120/376 (31.91%), Postives = 190/376 (50.53%), Query Frame = 1
Query:    1 MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALR---ERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTCADRYGRPLAGKVQVLRPVQLPPGEEFLVHCCTPRQPISSDLGVV---------EGEWQTAKVAASLSRLDASGRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTSRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            +++ G++ G     LIDTGA+  L+S+  ++R+P   R   E +T   +Q    ADGT +   G  ++ +++         +V  +  D I+GM  L    C+++   L L+     V C D   R L  +V + + V +PPG E LV C   R+   S  G+V         E     A+   S    D +G   VR LN     + +  G+ +G    + EG+      R         + +LP ++  ++  +     ++ E +++  LL ++A VFSR + D+G T LV+H I      AP+RQ +RR+   +  E  +QVE +   G+IEPS   W+SP+VLVKKKDG  RFC DYR+LNDVT +DA+P+P
Sbjct:   43 IFVAGRIGGLQGYFLIDTGASGTLLSRKHYERIPEMQRPALEAMTTLIRQ----ADGTLMKQHGGANMEVRISKYKTTADVIVVDMETDAILGMELLITLGCVVDIKNLQLKFLDEIVPCYDWKARTLCARVVLRKAVDIPPGSEMLVRCDANRKIPGSRQGMVIPTDKNPIAERGIMVARALVS----DCNGVIPVRLLNVTPHPIHVKQGTAVGMLEPLSEGEGVVTAERDKENEVPLKEKQLPEYLHDIWRRSTTEL-DDGEAEKVAALLMKYADVFSRGDDDMGCTNLVKHSINTGEA-APIRQPSRRLPIWQREEAGKQVEKMLKAGIIEPSCSPWASPIVLVKKKDGGTRFCVDYRKLNDVTIKDAYPIP 408          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A2G8K9V5_STIJA (Retrovirus-related Pol polyprotein from transposon n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K9V5_STIJA)

HSP 1 Score: 178 bits (452), Expect = 2.880e-47
Identity = 130/379 (34.30%), Postives = 198/379 (52.24%), Query Frame = 1
Query:    1 MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMA-DGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVT-CADRYGRPLAGKVQVLRPVQLPPGEEFLVHCCTPRQPISSDLGVVEGE---WQTAKVAASLSRLDAS-GRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTS-----RTSLTNRDAGDP---ELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTA-PVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            +Y+ GK+ G  VN L+DTGA   +I   VF RL +    RL  D+    L A DG  L F G  ++ LKV     +   +V+ I  D ++G  FL  ++C I+ GA  L +  R +        + +  +V V   V +P   E +V   T  Q   S   +VE      +  ++  + + +D S G   +R +N   R + +  G+ +G   C     V  + S     RT      +G      L  H+  + E +      E E  ++R LL  +A VF+R + DLGRT LV+H+I    GTA P+RQA RR+   ++AE +++++ +  +G+IEPSN  WSSPVVLVKKKDG  R+C DYR+LN+VT++D++PLP
Sbjct:  150 LYVTGKLEGVRVNFLVDTGAEVTVIQTGVFRRLTTGKALRL--DEVPLDLAAADGRPLTFLGRGNLLLKVGELEVEHEVLVADIDADALLGYDFLKLYNCTIDAGAGKLTIGKRQLEQLGTDVDKSVGTRVVVANTVVVPASSEKVVMARTSAQMEMSACAIVECSESFLRRRQLMVARALVDPSKGVIPLRLMNVTDRPVTLYEGTSVGQ--CQPVELVDSIASERAKCRTVTKGERSGAKGIIALGEHLEILAEKSCVDLSKE-EADRVRQLLADNANVFARSKEDLGRTDLVKHEIDT--GTAKPIRQAPRRLTIHKKAEADKELDKMLRQGVIEPSNSAWSSPVVLVKKKDGSLRYCIDYRKLNNVTEKDSYPLP 521          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A2G8JG00_STIJA (Peptidase A2 domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JG00_STIJA)

HSP 1 Score: 178 bits (452), Expect = 6.660e-47
Identity = 130/379 (34.30%), Postives = 198/379 (52.24%), Query Frame = 1
Query:    1 MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMA-DGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVT-CADRYGRPLAGKVQVLRPVQLPPGEEFLVHCCTPRQPISSDLGVVEGE---WQTAKVAASLSRLDAS-GRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTS-----RTSLTNRDAGDP---ELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTA-PVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            +Y+ GK+ G  VN L+DTGA   +I   VF RL +    RL  D+    L A DG  L F G  ++ LKV     +   +V+ I  D ++G  FL  ++C I+ GA  L +  R +        + +  +V V   V +P   E +V   T  Q   S   +VE      +  ++  + + +D S G   +R +N   R + +  G+ +G   C     V  + S     RT      +G      L  H+  + E +      E E  ++R LL  +A VF+R + DLGRT LV+H+I    GTA P+RQA RR+   ++AE +++++ +  +G+IEPSN  WSSPVVLVKKKDG  R+C DYR+LN+VT++D++PLP
Sbjct:   21 LYVTGKLEGVRVNFLVDTGAEVTVIQTGVFRRLTTGKALRL--DEVPLDLAAADGRPLTFLGRGNLLLKVGELEVEHEVLVADIDADALLGYDFLKLYNCTIDAGAGKLTIGKRQLEQLGTDVDKSVGTRVVVANTVVVPASSEKVVMARTSAQMEMSACAIVECSESFLRRRQLMVARALVDPSKGVIPLRLMNVTDRPVTLYEGTSVGQ--CQPVELVDSIASERAKCRTVTKGERSGAKGIIALGEHLEILAEKSCVDLSKE-EADRVRQLLADNANVFARSKEDLGRTDLVKHEIDT--GTAKPIRQAPRRLTIHKKAEADKELDKMLRQGVIEPSNSAWSSPVVLVKKKDGSLRYCIDYRKLNNVTEKDSYPLP 392          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A2G8KA18_STIJA (Retrovirus-related Pol polyprotein from transposon n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KA18_STIJA)

HSP 1 Score: 178 bits (452), Expect = 1.550e-46
Identity = 130/379 (34.30%), Postives = 198/379 (52.24%), Query Frame = 1
Query:    1 MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMA-DGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVT-CADRYGRPLAGKVQVLRPVQLPPGEEFLVHCCTPRQPISSDLGVVEGE---WQTAKVAASLSRLDAS-GRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTS-----RTSLTNRDAGDP---ELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTA-PVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            +Y+ GK+ G  VN L+DTGA   +I   VF RL +    RL  D+    L A DG  L F G  ++ LKV     +   +V+ I  D ++G  FL  ++C I+ GA  L +  R +        + +  +V V   V +P   E +V   T  Q   S   +VE      +  ++  + + +D S G   +R +N   R + +  G+ +G   C     V  + S     RT      +G      L  H+  + E +      E E  ++R LL  +A VF+R + DLGRT LV+H+I    GTA P+RQA RR+   ++AE +++++ +  +G+IEPSN  WSSPVVLVKKKDG  R+C DYR+LN+VT++D++PLP
Sbjct:  345 LYVTGKLEGVRVNFLVDTGAEVTVIQTGVFRRLTTGKALRL--DEVPLDLAAADGRPLTFLGRGNLLLKVGELEVEHEVLVADIDADALLGYDFLKLYNCTIDAGAGKLTIGKRQLEQLGTDVDKSVGTRVVVANTVVVPASSEKVVMARTSAQMEMSACAIVECSESFLRRRQLMVARALVDPSKGVIPLRLMNVTDRPVTLYEGTSVGQ--CQPVELVDSIASERAKCRTVTKGERSGAKGIIALGEHLEILAEKSCVDLSKE-EADRVRQLLADNANVFARSKEDLGRTDLVKHEIDT--GTAKPIRQAPRRLTIHKKAEADKELDKMLRQGVIEPSNSAWSSPVVLVKKKDGSLRYCIDYRKLNNVTEKDSYPLP 716          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A2G8L1J6_STIJA (Retrovirus-related Pol polyprotein from transposon n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L1J6_STIJA)

HSP 1 Score: 174 bits (440), Expect = 3.890e-46
Identity = 114/360 (31.67%), Postives = 188/360 (52.22%), Query Frame = 1
Query:   37 NLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTCA--DRYGRP--LAGKVQVLRPVQLPPGEEFLVHCCTPRQPISSDLGVVEGEWQTAKVAASLSRLDASGRFWV---RCLNFGARTLEIPAGSIIGTFCCVKEG-DVQGVTSRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            +L+IDTGA   ++ +S++  +  + R +L +  +   +MAD  ++P FG  +  LK+          V+ IS D I+G  FL  + C I  G   +++    V C   +R   P  +  ++ V   V + PG+E +V      +   ++  V   E    K +  +++   + +  V   R +N  +  + +  G    T   V+E   VQ     TS  N   G  +LP H++G+Y    G   +E +K  +R LL +H  +F++ + DLGRT +V+H IP     +P++Q ARR+   +  +   +V D+  RG+IEPS+  W+SPVVLVKKKDG  RFC  YRRLND+T +D++P+P
Sbjct:   14 HLVIDTGANICVVKRSMYQEIVQSARPKLERTGEDL-VMADDRSIPLFGCGNFSLKMGDFSASHPVWVADISTDFILGCDFLAKYKCQINLGLGQIKIGNIMVQCFGNERLNAPSNVVNRITVAETVCISPGQEIVVPGKLANKLDGTEFIVEPCESFVKKHSIMVAKAVVNPQSHVVPIRMINVDSVPVTVYEGVTAATCEPVQEVLSVQNTEGDTS--NEGGGVTDLPQHILGLYNSLEGSL-DENQKALVRRLLLKHESIFAKCKEDLGRTDIVKHKIPTKE-VSPIKQNARRLPLNKREDAANEVSDMLRRGVIEPSSSPWASPVVLVKKKDGSTRFCVHYRRLNDITTKDSYPIP 368          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A671WW06_SPAAU (Ribonuclease H n=2 Tax=Sparus aurata TaxID=8175 RepID=A0A671WW06_SPAAU)

HSP 1 Score: 164 bits (416), Expect = 3.520e-41
Identity = 119/372 (31.99%), Postives = 185/372 (49.73%), Query Frame = 1
Query:    4 YLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSRIS-EDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTC-ADRYGRPLAGKVQVLRPVQLPPGEEFLVHCC-TPRQPISSD---LGVVEGEWQT---AKVAASLSRLDASGRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTSRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            Y+ G + G  VN+L+D+GAT + IS   F R    L +R  + D       +G  L   GTI+  L +    +   F V R S +  ++G+ FL  +  L+++   TL+L    V     +   P    V +     LPP  E LV  C TP +P+      +G ++   Q      VA +++ +   G    R LN   + + +  G+ +G F  V E ++  +T     T       ELP  +V + E       ++ +K+++  LL  H  +F+  +   G+ TL++H I       P+RQ A R  P+++ EI+RQVE L   G+IE S   W++PVVLVKKK+G+WRFC DYRRLN +T +D  PLP
Sbjct:   29 YVRGSIEGTEVNILVDSGATESFISAD-FRRTAPTLHKRPLKADFVAARAVNGQMLDTLGTITATLHLGNNSWQHVFHVLRGSTQTALLGLDFLVPNRALLDYAHGTLQLWDTIVPLLCGKDLIPECCNVSITTATTLPPLSEMLVPVCVTPTRPVDQSPDFVGYLKPNIQNKCECVVAHAVTSVK-KGVTLARVLNPTHQDITLREGTHLGEFFSVDESEIVPLTHAPVKTVSAISFTELP--LVSLQESPA----SQQQKEKIAALLAEHQEIFNMTKGVAGKCTLIKHSIKTG-DHPPIRQRAYRASPDKKEEIDRQVEALLEDGVIEGSFSPWAAPVVLVKKKNGEWRFCIDYRRLNSITVKDCHPLP 391          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A8C1TQQ1_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1TQQ1_CYPCA)

HSP 1 Score: 158 bits (400), Expect = 2.150e-40
Identity = 116/367 (31.61%), Postives = 182/367 (49.59%), Query Frame = 1
Query:   19 VAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSR-ISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTCADRYGRPLAG--KVQVLRPVQLPPGEEFLVHCC----TPRQPISSDL-GVV-EGEWQTAKVAASLSRLDASGRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTSRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            V G  V  LID+G+T +++S+   +  P AL++R            DG  L   G +++ +++    +   F + R   +  I+G  FL  H  L++     L+L    +    + G  +A    V VL P ++P   E L+  C    TP  P+ +D  GV+         VA SLS +  +G   VR LN     +E+ +G  +G F  V   DV        ++    G    P H +           +  + Q L+ LL +++ VFS+   D GRT++++H I     T P++Q A R+ PE+ AEI+ QV++L    +IE S   W++PVVLV+KK+G WRFC DYR+LN VT +D+ PLP
Sbjct:   21 VEGIEVCTLIDSGSTVSIVSEDFRNSHP-ALKKRPMTPSSLPARSVDGQCLDILGKLTIGIRLGHQVWQQDFEILRGACQPVILGFDFLRKHHALLDINNKMLQLWDMKIPLLPK-GHEVAACCNVSVLAPTKIPAMSETLITACVSAATPASPMPTDYYGVLMPNPLCDIIVAHSLSEVQ-NGTTVVRILNPSRDDVELHSGQHLGEFHSVSSVDV--------VSGEGTGCATSPVHDIAPSVQINDSDLSPSQVQSLKSLLQKYSAVFSKHSEDRGRTSIIKHQIRTGEAT-PIKQRAYRVTPEQRAEIQTQVDNLLKADVIEESYSPWAAPVVLVRKKNGTWRFCLDYRKLNTVTIKDSHPLP 375          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: UPI001C2D1432 (LOW QUALITY PROTEIN: uncharacterized protein LOC121815877 n=1 Tax=Haplochromis burtoni TaxID=8153 RepID=UPI001C2D1432)

HSP 1 Score: 162 bits (410), Expect = 2.230e-40
Identity = 114/373 (30.56%), Postives = 181/373 (48.53%), Query Frame = 1
Query:    1 MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSRIS-EDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTCADRYGRPLAGKVQVLRPVQLPPGEEFLVH-------CCTPRQPISSDLGVVEGEWQTAKVAASLSRLDASGRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVT-SRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            M +P ++    V  ++D+GA  +++    ++ +   +R  L     +  L      +P  G   +P+ +     D  F+V+ I+  + ++G PFLT     ++FG   + L G  V          +  V++ R V + PG+E++V               +S   G VE       +A  L     S    +R  N G + + I AGSI G     +  +   V+ +  SLT+     P +P H+  +Y  +     N+ E+ QL+ LL  +  VFS    DLGRT+LV+HDI   PG APV+Q  RRM  E++   ++Q+ D    GL + S   W+SP+V+V+KKDG +R C DYR LND T  DA+PLP
Sbjct:  215 MSIPMRLYEVEVCAVLDSGARRSVLPLPYYNSIHPDVRPPLQPSVVETLLGVGPGDVPVLGEAQIPVNINNRQVDVDFLVADIAGNEVLLGHPFLTQAEARLDFGKRRIILFGEEVLYYQTEASTKSHAVRIARTVVVEPGQEYMVKGNVHPGAAARGDMMLSPTKGFVEKH--KVLIARVLVNAQPSKAVPLRLFNLGNKAVTIKAGSIAGLLQPAEAVEPSMVSPAADSLTSP----PVVPLHLQELYAQSSTDL-NDYEQLQLKRLLCTYGHVFSTGPADLGRTSLVQHDIITRPG-APVKQNPRRMAGEKQQNADQQIYDSLQSGLAQRSCSSWASPIVMVRKKDGTYRLCIDYRALNDRTITDAYPLP 579          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A3P8PZZ5_ASTCA (Uncharacterized protein n=8 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3P8PZZ5_ASTCA)

HSP 1 Score: 162 bits (410), Expect = 2.360e-40
Identity = 114/373 (30.56%), Postives = 181/373 (48.53%), Query Frame = 1
Query:    1 MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSRIS-EDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTCADRYGRPLAGKVQVLRPVQLPPGEEFLVH-------CCTPRQPISSDLGVVEGEWQTAKVAASLSRLDASGRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVT-SRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            M +P ++    V  ++D+GA  +++    ++ +   +R  L     +  L      +P  G   +P+ +     D  F+V+ I+  + ++G PFLT     ++FG   + L G  V          +  V++ R V + PG+E++V               +S   G VE       +A  L     S    +R  N G + + I AGSI G     +  +   V+ +  SLT+     P +P H+  +Y  +     N+ E+ QL+ LL  +  VFS    DLGRT+LV+HDI   PG APV+Q  RRM  E++   ++Q+ D    GL + S   W+SP+V+V+KKDG +R C DYR LND T  DA+PLP
Sbjct:  482 MSIPMRLYEVEVCAVLDSGARRSVLPLPYYNSIHPDVRPPLQPSVVETLLGVGPGDVPVLGEAQIPVNINNRQVDVDFLVADIAGNEVLLGHPFLTQAEARLDFGKRRIILFGEEVLYYQTEASTKSHAVRIARTVVVEPGQEYMVKGNVHPGAAARGDMMLSPTKGFVEKH--KVLIARVLVNAQPSKAVPLRLFNLGNKAVTIKAGSIAGLLQPAEAMEPSMVSPAADSLTSP----PVVPLHLQELYAQSSTDL-NDYEQLQLKRLLCTYGHVFSTGPADLGRTSLVQHDIITRPG-APVKQNPRRMAGEKQQNADQQIYDSLQSGLAQRSCSSWASPIVMVRKKDGTYRLCIDYRALNDRTITDAYPLP 846          
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Match: A0A6J8DRE9_MYTCO (Transposon Ty3-I Gag-Pol polyprotein,Transposon Ty3-G Gag-Pol polyprotein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DRE9_MYTCO)

HSP 1 Score: 161 bits (408), Expect = 3.240e-40
Identity = 116/372 (31.18%), Postives = 188/372 (50.54%), Query Frame = 1
Query:    4 YLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGLMADGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCLIEFGALTLRLAGRAVTCADRYGRPLAGKVQVLRPVQLPPGEE-FLVHCCTPRQPISSDL--GVVEG-----EWQTAKVAASLSRLDASGRFWVRCLNFGARTLEIPAGSIIGTFCCVKEGDVQGVTSRTSLTNRDAGDPELPPHVVGMYEDALGHCGNELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTA-PVRQAARRMGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYRRLNDVTQQDAFPLP 1092
            ++   V       LIDTGAT  L+S ++F R+    R  L +   Q  + A+GT L   G     +++    +    +V+ IS DGI+G+ F+  ++C I+    TL+    A   A   G+    ++     + +PPG E F          ++S L  G++E      +   A +A +L  ++A     +R LN       I AG+I+G         V+ V + T  T+++  +P+L   +  +  +A  H   E ++ Q+   L ++  +F+  + D+G T++V H I    GT  P +Q  RR       EI++ ++++  RG+IEPS G WSS +VLVKKKDG  RFC DYRRLND+T +DA+PLP
Sbjct:  446 FIDVAVHNQPTKFLIDTGATVTLVSHALFYRIQKKERPDL-EPITQVIISANGTELSIAGKGMFCIEIGQDKFIVEALVADISIDGILGLDFMKKNNCKIDLQQETLQCKSNAYPMAFS-GKIGCYRISAAEDISIPPGTEAFSRGRINDYDTLTSKLQMGIIEPCEKFVKRDNALLAKTL--VEAREHVPIRLLNVSNNVTTIRAGTIVGEI-----SPVEDVITMTGNTSKEHKNPKLDNELQKLVNEASSHL-TEKQRHQVTNCLQQYKSLFALSDNDIGCTSIVRHRINT--GTNYPFKQPPRRTPVAMRDEIDKHIDNMLQRGVIEPSEGPWSSGIVLVKKKDGSTRFCVDYRRLNDLTVKDAYPLP 805          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8214.19619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003F071FC4.290e-5231.91uncharacterized protein LOC100379030 n=1 Tax=Sacco... [more]
A0A2G8K9V5_STIJA2.880e-4734.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8JG00_STIJA6.660e-4734.30Peptidase A2 domain-containing protein n=1 Tax=Sti... [more]
A0A2G8KA18_STIJA1.550e-4634.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8L1J6_STIJA3.890e-4631.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A671WW06_SPAAU3.520e-4131.99Ribonuclease H n=2 Tax=Sparus aurata TaxID=8175 Re... [more]
A0A8C1TQQ1_CYPCA2.150e-4031.61Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]
UPI001C2D14322.230e-4030.56LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
A0A3P8PZZ5_ASTCA2.360e-4030.56Uncharacterized protein n=8 Tax=Pseudocrenilabrina... [more]
A0A6J8DRE9_MYTCO3.240e-4031.18Transposon Ty3-I Gag-Pol polyprotein,Transposon Ty... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8214contigF-serratus_M_contig8214:716..1807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score201.8
Seed ortholog evalue5.4e-49
Seed eggNOG ortholog7668.SPU_003372-tr
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,COG2801@1,KOG0017@2759
COG Functional cat.E
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size1092
Cds size1092
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932442.7436068-CDS-F-serratus_M_contig8214:715..18071622932442.7436068-CDS-F-serratus_M_contig8214:715..1807Fucus serratus maleCDSF-serratus_M_contig8214 716..1807 -
1690964311.1798856-CDS-F-serratus_M_contig8214:715..18071690964311.1798856-CDS-F-serratus_M_contig8214:715..1807Fucus serratus maleCDSF-serratus_M_contig8214 716..1807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8214.19619.1prot_F-serratus_M_contig8214.19619.1Fucus serratus malepolypeptideF-serratus_M_contig8214 716..1807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8214.19619.1

>prot_F-serratus_M_contig8214.19619.1 ID=prot_F-serratus_M_contig8214.19619.1|Name=mRNA_F-serratus_M_contig8214.19619.1|organism=Fucus serratus male|type=polypeptide|length=364bp
MYLPGKVAGAAVNLLIDTGATTNLISKSVFDRLPSALRERLTQDDQQHGL
MADGTTLPFFGTISVPLKVKGTPYDTTFVVSRISEDGIVGMPFLTAHSCL
IEFGALTLRLAGRAVTCADRYGRPLAGKVQVLRPVQLPPGEEFLVHCCTP
RQPISSDLGVVEGEWQTAKVAASLSRLDASGRFWVRCLNFGARTLEIPAG
SIIGTFCCVKEGDVQGVTSRTSLTNRDAGDPELPPHVVGMYEDALGHCGN
ELEKQQLRGLLTRHAGVFSRDERDLGRTTLVEHDIPVVPGTAPVRQAARR
MGPEREAEIERQVEDLQSRGLIEPSNGGWSSPVVLVKKKDGKWRFCTDYR
RLNDVTQQDAFPLP
back to top

mRNA from alignment at F-serratus_M_contig8214:716..1807-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8214.19619.1 ID=mRNA_F-serratus_M_contig8214.19619.1|Name=mRNA_F-serratus_M_contig8214.19619.1|organism=Fucus serratus male|type=mRNA|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig8214:716..1807- (Fucus serratus male)
ATGTATTTGCCTGGGAAGGTGGCCGGTGCCGCAGTGAATCTATTAATAGA TACTGGAGCCACTACCAACCTAATATCGAAGAGCGTCTTCGATCGCTTGC CGAGCGCGCTGCGTGAGAGGCTCACGCAGGACGACCAACAGCACGGGCTG ATGGCGGACGGAACGACCCTGCCCTTCTTCGGAACGATCTCGGTGCCCCT CAAGGTGAAGGGGACTCCCTACGACACGACGTTCGTAGTGAGCCGGATCA GCGAAGATGGGATCGTGGGTATGCCCTTCCTTACCGCGCACTCTTGTTTG ATAGAGTTCGGGGCGCTAACGTTGCGCCTCGCAGGCCGGGCCGTGACATG CGCGGACCGCTATGGGAGGCCCTTAGCGGGAAAGGTGCAGGTGCTCCGTC CGGTGCAACTACCTCCGGGGGAGGAATTTCTAGTGCACTGTTGCACACCA CGGCAACCCATCAGTTCGGACTTGGGGGTCGTGGAAGGGGAGTGGCAGAC CGCCAAGGTGGCGGCTAGCCTAAGTCGCCTCGACGCGTCGGGGCGGTTCT GGGTGCGGTGCCTTAATTTCGGAGCACGCACATTGGAGATTCCGGCGGGG TCCATCATCGGGACTTTCTGTTGCGTGAAGGAAGGAGACGTACAAGGTGT AACGTCACGGACCTCCCTCACGAACAGAGACGCCGGCGACCCAGAGCTAC CCCCACACGTGGTGGGGATGTATGAGGACGCCCTGGGTCACTGCGGGAAC GAGCTAGAAAAGCAGCAGCTCAGGGGGCTGCTCACCCGCCACGCAGGGGT GTTTAGTCGTGACGAGCGTGACCTGGGGCGGACCACGCTGGTAGAGCACG ACATACCGGTAGTGCCTGGCACCGCGCCGGTGCGGCAGGCCGCACGCAGA ATGGGCCCCGAACGCGAGGCGGAAATCGAGCGGCAGGTAGAAGACCTTCA GTCGAGAGGCCTGATCGAGCCGTCCAACGGGGGTTGGAGTTCGCCTGTGG TGTTAGTCAAGAAAAAGGACGGTAAGTGGCGGTTCTGTACCGACTACCGT CGCTTGAACGATGTCACCCAGCAGGACGCCTTCCCCCTACCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig8214:716..1807-

>mRNA_F-serratus_M_contig8214.19619.1 ID=mRNA_F-serratus_M_contig8214.19619.1|Name=mRNA_F-serratus_M_contig8214.19619.1|organism=Fucus serratus male|type=CDS|length=2184bp|location=Sequence derived from alignment at F-serratus_M_contig8214:716..1807- (Fucus serratus male)
ATGTATTTGCCTGGGAAGGTGGCCGGTGCCGCAGTGAATCTATTAATAGA
TACTGGAGCCACTACCAACCTAATATCGAAGAGCGTCTTCGATCGCTTGC
CGAGCGCGCTGCGTGAGAGGCTCACGCAGGACGACCAACAGCACGGGCTG
ATGGCGGACGGAACGACCCTGCCCTTCTTCGGAACGATCTCGGTGCCCCT
CAAGGTGAAGGGGACTCCCTACGACACGACGTTCGTAGTGAGCCGGATCA
GCGAAGATGGGATCGTGGGTATGCCCTTCCTTACCGCGCACTCTTGTTTG
ATAGAGTTCGGGGCGCTAACGTTGCGCCTCGCAGGCCGGGCCGTGACATG
CGCGGACCGCTATGGGAGGCCCTTAGCGGGAAAGGTGCAGGTGCTCCGTC
CGGTGCAACTACCTCCGGGGGAGGAATTTCTAGTGCACTGTTGCACACCA
CGGCAACCCATCAGTTCGGACTTGGGGGTCGTGGAAGGGGAGTGGCAGAC
CGCCAAGGTGGCGGCTAGCCTAAGTCGCCTCGACGCGTCGGGGCGGTTCT
GGGTGCGGTGCCTTAATTTCGGAGCACGCACATTGGAGATTCCGGCGGGG
TCCATCATCGGGACTTTCTGTTGCGTGAAGGAAGGAGACGTACAAGGTGT
AACGTCACGGACCTCCCTCACGAACAGAGACGCCGGCGACCCAGAGCTAC
CCCCACACGTGGTGGGGATGTATGAGGACGCCCTGGGTCACTGCGGGAAC
GAGCTAGAAAAGCAGCAGCTCAGGGGGCTGCTCACCCGCCACGCAGGGGT
GTTTAGTCGTGACGAGCGTGACCTGGGGCGGACCACGCTGGTAGAGCACG
ACATACCGGTAGTGCCTGGCACCGCGCCGGTGCGGCAGGCCGCACGCAGA
ATGGGCCCCGAACGCGAGGCGGAAATCGAGCGGCAGGTAGAAGACCTTCA
GTCGAGAGGCCTGATCGAGCCGTCCAACGGGGGTTGGAGTTCGCCTGTGG
TGTTAGTCAAGAAAAAGGACGGTAAGTGGCGGTTCTGTACCGACTACCGT
CGCTTGAACGATGTCACCCAGCAGGACGCCTTCCCCCTACCGATGTATTT
GCCTGGGAAGGTGGCCGGTGCCGCAGTGAATCTATTAATAGATACTGGAG
CCACTACCAACCTAATATCGAAGAGCGTCTTCGATCGCTTGCCGAGCGCG
CTGCGTGAGAGGCTCACGCAGGACGACCAACAGCACGGGCTGATGGCGGA
CGGAACGACCCTGCCCTTCTTCGGAACGATCTCGGTGCCCCTCAAGGTGA
AGGGGACTCCCTACGACACGACGTTCGTAGTGAGCCGGATCAGCGAAGAT
GGGATCGTGGGTATGCCCTTCCTTACCGCGCACTCTTGTTTGATAGAGTT
CGGGGCGCTAACGTTGCGCCTCGCAGGCCGGGCCGTGACATGCGCGGACC
GCTATGGGAGGCCCTTAGCGGGAAAGGTGCAGGTGCTCCGTCCGGTGCAA
CTACCTCCGGGGGAGGAATTTCTAGTGCACTGTTGCACACCACGGCAACC
CATCAGTTCGGACTTGGGGGTCGTGGAAGGGGAGTGGCAGACCGCCAAGG
TGGCGGCTAGCCTAAGTCGCCTCGACGCGTCGGGGCGGTTCTGGGTGCGG
TGCCTTAATTTCGGAGCACGCACATTGGAGATTCCGGCGGGGTCCATCAT
CGGGACTTTCTGTTGCGTGAAGGAAGGAGACGTACAAGGTGTAACGTCAC
GGACCTCCCTCACGAACAGAGACGCCGGCGACCCAGAGCTACCCCCACAC
GTGGTGGGGATGTATGAGGACGCCCTGGGTCACTGCGGGAACGAGCTAGA
AAAGCAGCAGCTCAGGGGGCTGCTCACCCGCCACGCAGGGGTGTTTAGTC
GTGACGAGCGTGACCTGGGGCGGACCACGCTGGTAGAGCACGACATACCG
GTAGTGCCTGGCACCGCGCCGGTGCGGCAGGCCGCACGCAGAATGGGCCC
CGAACGCGAGGCGGAAATCGAGCGGCAGGTAGAAGACCTTCAGTCGAGAG
GCCTGATCGAGCCGTCCAACGGGGGTTGGAGTTCGCCTGTGGTGTTAGTC
AAGAAAAAGGACGGTAAGTGGCGGTTCTGTACCGACTACCGTCGCTTGAA
CGATGTCACCCAGCAGGACGCCTTCCCCCTACCG
back to top