mRNA_F-serratus_M_contig821.19618.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig821.19618.1
Unique NamemRNA_F-serratus_M_contig821.19618.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig821.19618.1 vs. uniprot
Match: A0A6H5L245_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L245_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.230e-34
Identity = 58/91 (63.74%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    4 MYNAHVGKSVYAMQLKQWFDVFGQDNFKVIFTETMAEDPLGTLKEVLDFLSLNVVDPKGVTGLRSEEEWAGVVGARYNTADWKKKKKLDLQ 276
            +YNAHVGKSVYAMQL++WF+ FG +NFKV+FTE + E+P+ TL+EVLDF+ L++VDP+G  GLR+ E W+ +VGAR+NTAD  KKK LD Q
Sbjct:  115 LYNAHVGKSVYAMQLRRWFNAFGSENFKVVFTEDLEEEPIKTLEEVLDFIGLDMVDPQGDKGLRNLEMWSEIVGARFNTADGAKKKVLDSQ 205
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BLAST of mRNA_F-serratus_M_contig821.19618.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.470e-32
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    4 MYNAHVGKSVYAMQLKQWFDVFGQDNFKVIFTETMAEDPLGTLKEVLDFLSLNVVDPKGVTGLRSEEEWAGVVGARYNTADWKKKKKLDLQ 276
            +YNAHVGKSVYAMQL++WF+ FG++NFKV+FT+ + E+P+ TL+EVLDF+ L++VDP+G  GLRS E W+ +VGAR+NTAD  KKK LD Q
Sbjct:  512 LYNAHVGKSVYAMQLRRWFNAFGRENFKVVFTDDLEEEPIKTLEEVLDFIGLDMVDPQGDKGLRSLEMWSDIVGARFNTADGAKKKVLDSQ 602
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BLAST of mRNA_F-serratus_M_contig821.19618.1 vs. uniprot
Match: D8LLL8_ECTSI (Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.180e-20
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    4 MYNAHVGKSVYAMQLKQWFDVFGQDNFKVIFTETMAEDPLGTLKEVLDFLSLNVVDPKGVTGLRSEEEWAGVVGARYNTADWKKKKKLDLQ 276
            +Y +HVGKS+YA+QL++WFD+FG++NFKV+FT+ MA DP+G L++VL FL L +       GL   + W  + G  YN    KKK +L  Q
Sbjct:  361 LYVSHVGKSMYALQLERWFDLFGRENFKVVFTDDMAVDPVGVLEDVLHFLGLELTSEDESKGLPDMKGWKKITGMAYNKTKSKKKDELGDQ 451
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig821.19618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L245_9PHAE1.230e-3463.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD4_ECTSI1.470e-3263.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLL8_ECTSI8.180e-2047.25Sulfotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig821contigF-serratus_M_contig821:134358..135626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D8LLL8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-03_003890.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size276
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig821.19618.1prot_F-serratus_M_contig821.19618.1Fucus serratus malepolypeptideF-serratus_M_contig821 134358..135623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932442.6294-CDS-F-serratus_M_contig821:134357..1344471622932442.6294-CDS-F-serratus_M_contig821:134357..134447Fucus serratus maleCDSF-serratus_M_contig821 134358..134447 -
1690964311.1341305-CDS-F-serratus_M_contig821:134357..1344471690964311.1341305-CDS-F-serratus_M_contig821:134357..134447Fucus serratus maleCDSF-serratus_M_contig821 134358..134447 -
1622932442.643249-CDS-F-serratus_M_contig821:134678..1347771622932442.643249-CDS-F-serratus_M_contig821:134678..134777Fucus serratus maleCDSF-serratus_M_contig821 134679..134777 -
1690964311.1458015-CDS-F-serratus_M_contig821:134678..1347771690964311.1458015-CDS-F-serratus_M_contig821:134678..134777Fucus serratus maleCDSF-serratus_M_contig821 134679..134777 -
1622932442.6567333-CDS-F-serratus_M_contig821:135539..1356231622932442.6567333-CDS-F-serratus_M_contig821:135539..135623Fucus serratus maleCDSF-serratus_M_contig821 135540..135623 -
1690964311.1557615-CDS-F-serratus_M_contig821:135539..1356231690964311.1557615-CDS-F-serratus_M_contig821:135539..135623Fucus serratus maleCDSF-serratus_M_contig821 135540..135623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932442.6980042-UTR-F-serratus_M_contig821:135623..1356261622932442.6980042-UTR-F-serratus_M_contig821:135623..135626Fucus serratus maleUTRF-serratus_M_contig821 135624..135626 -
1690964311.1675746-UTR-F-serratus_M_contig821:135623..1356261690964311.1675746-UTR-F-serratus_M_contig821:135623..135626Fucus serratus maleUTRF-serratus_M_contig821 135624..135626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig821.19618.1

>prot_F-serratus_M_contig821.19618.1 ID=prot_F-serratus_M_contig821.19618.1|Name=mRNA_F-serratus_M_contig821.19618.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MYNAHVGKSVYAMQLKQWFDVFGQDNFKVIFTETMAEDPLGTLKEVLDFL
SLNVVDPKGVTGLRSEEEWAGVVGARYNTADWKKKKKLDLQ
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mRNA from alignment at F-serratus_M_contig821:134358..135626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig821.19618.1 ID=mRNA_F-serratus_M_contig821.19618.1|Name=mRNA_F-serratus_M_contig821.19618.1|organism=Fucus serratus male|type=mRNA|length=1269bp|location=Sequence derived from alignment at F-serratus_M_contig821:134358..135626- (Fucus serratus male)
CACATGTATAATGCGCACGTGGGCAAGAGCGTCTACGCGATGCAGCTCAA
GCAATGGTTTGACGTGTTCGGCCAGGACAATTTCAAGGTAACCATGGGAA
AAGAGGGGTGCACATTACTTGGTCCACAGGGTTTCCTGTAAAGGTAGCAC
CCGTTACTCGAGTTAACGTGAGGACTACAGCCCTGTGCCAGCGGATTCTT
TGTGGTAAGCGCCATCGGAACTTAACTGAATGATCGTATATACTCAGGAC
TGGCCCGACGGCGAGCGACGATGTAGATAGACACCGCCGTGGAAAGCGGA
AGGCAGGGAAGAAGCCCGCCAGGTAGAAAGAAAATCGCCCAGAGTGTGTA
GGATAAGAGCGTGCTTGCGCGGGACGGGACTGCCGAACGTGTCTCGTAAG
ACTAAATTCTCAGACGTGAATGGTGACAGACACATATACATCTGTACAGC
TGACCACGACCGAGGTTGGCAACTATTATGATTAATATCTAATATGCTGA
ACGTGATTCCCAAAAACTGCACAGAGCGCGGAAAAATAAGTACAAAGTGT
GCAATGCTTGTTCTGAGATAACCCCCCCCCCCCCCCATGGAAACACAACA
CCTCCATGCTCAGATTTTAGAGTTGACAGGAGCTCAAAATAAGTTTTGAG
AAAATCCTTGGCTAGATTTTCCATCACCGGGGTTGTTGGAAAGAATCGAA
TTCTGTAATCAAGGGGATAACGGGGAAACAAAACTTCTAACGGAGGGGTG
TTCTCTCCGAAACCGATTATGACTGTTCGTGTGGAGCAGTGTGCGATGAG
ATCGCCCGGCAAGTAGTTGCTGTTGTCATTTTTGCAACTCACCGGACAGG
TTATCTTTACCGAGACTATGGCTGAAGATCCTCTTGGAACGCTCAAGGAA
GTTTTGGACTTCCTCAGCTTGAACGTGGTGGACCCTAAGGGCGTTACGGT
ACGGCAACGGCCGTGATGCGTCGGAATAGTTATACTTGTAGATACTAGAG
CCTTTAGGTCATTTTCCAAAAATGAGGGTTCGACCGTGGAGATAAGTCCT
GACAATAAAGCCCGCTGACTTGGATCACCGTCGAACGAGTTTGTTGTCTC
CTCTGACGCTCGGCTGTGGGTCGGACTACCGAACTATCACGCTCCCTCAG
CTTGTAACATGTGTTTTGCTGTATTAAAGGGGCTACGGAGTGAGGAAGAA
TGGGCTGGTGTGGTGGGCGCCCGATATAATACCGCCGATTGGAAGAAAAA
GAAAAAACTGGATTTACAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig821:134358..135626-

>mRNA_F-serratus_M_contig821.19618.1 ID=mRNA_F-serratus_M_contig821.19618.1|Name=mRNA_F-serratus_M_contig821.19618.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig821:134358..135626- (Fucus serratus male)
ATGTATAATGCGCACGTGGGCAAGAGCGTCTACGCGATGCAGCTCAAGCA
ATGGTTTGACGTGTTCGGCCAGGACAATTTCAAGATGTATAATGCGCACG
TGGGCAAGAGCGTCTACGCGATGCAGCTCAAGCAATGGTTTGACGTGTTC
GGCCAGGACAATTTCAAGGTTATCTTTACCGAGACTATGGCTGAAGATCC
TCTTGGAACGCTCAAGGAAGTTTTGGACTTCCTCAGCTTGAACGTGGTGG
ACCCTAAGGGCGTTACGGTTATCTTTACCGAGACTATGGCTGAAGATCCT
CTTGGAACGCTCAAGGAAGTTTTGGACTTCCTCAGCTTGAACGTGGTGGA
CCCTAAGGGCGTTACGGGGCTACGGAGTGAGGAAGAATGGGCTGGTGTGG
TGGGCGCCCGATATAATACCGCCGATTGGAAGAAAAAGAAAAAACTGGAT
TTACAGGGGCTACGGAGTGAGGAAGAATGGGCTGGTGTGGTGGGCGCCCG
ATATAATACCGCCGATTGGAAGAAAAAGAAAAAACTGGATTTACAG
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