mRNA_F-serratus_M_contig821.19617.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig821.19617.1
Unique NamemRNA_F-serratus_M_contig821.19617.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig821.19617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig821contigF-serratus_M_contig821:79835..80278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932442.5678468-CDS-F-serratus_M_contig821:79834..798971622932442.5678468-CDS-F-serratus_M_contig821:79834..79897Fucus serratus maleCDSF-serratus_M_contig821 79835..79897 +
1690964311.1098418-CDS-F-serratus_M_contig821:79834..798971690964311.1098418-CDS-F-serratus_M_contig821:79834..79897Fucus serratus maleCDSF-serratus_M_contig821 79835..79897 +
1622932442.585041-CDS-F-serratus_M_contig821:80100..802771622932442.585041-CDS-F-serratus_M_contig821:80100..80277Fucus serratus maleCDSF-serratus_M_contig821 80101..80277 +
1690964311.1219914-CDS-F-serratus_M_contig821:80100..802771690964311.1219914-CDS-F-serratus_M_contig821:80100..80277Fucus serratus maleCDSF-serratus_M_contig821 80101..80277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig821.19617.1prot_F-serratus_M_contig821.19617.1Fucus serratus malepolypeptideF-serratus_M_contig821 79835..80277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig821.19617.1

>prot_F-serratus_M_contig821.19617.1 ID=prot_F-serratus_M_contig821.19617.1|Name=mRNA_F-serratus_M_contig821.19617.1|organism=Fucus serratus male|type=polypeptide|length=80bp
VCIFLLHLLLISGLEAYWLLEKRSKTEWEAARSRGTTDSEMRARLSGKHV
RHRVLPVSEDDAEVRTSFSPSTSLEKADVG
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mRNA from alignment at F-serratus_M_contig821:79835..80278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig821.19617.1 ID=mRNA_F-serratus_M_contig821.19617.1|Name=mRNA_F-serratus_M_contig821.19617.1|organism=Fucus serratus male|type=mRNA|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig821:79835..80278+ (Fucus serratus male)
GTTTGCATCTTCTTGCTCCATCTGCTGCTGATATCCGGACTCGAAGCGTA
CTGGCTGTTGGAGGTGATTGCTCTCGCCGAGACCCTAGCTTTACCTTTTT
TTGTTCGCTGAGCATTAACAATGTCGCCGGGGGTGATTCAGGTAGATAGT
TTTCACAAGGGGTGTGTTCCATGCGAGAACATTCATTCTTCCACCGCGAA
ACCTCTGTGTGAAGAATATCTCGTTCCGGTGATACCCGTTGCACGCTGGT
TATGCTAATACCGCAGAAACGTTCTAAGACCGAGTGGGAAGCAGCTCGAA
GTCGTGGCACCACCGATAGCGAGATGCGAGCGCGTTTATCTGGCAAACAC
GTCCGCCATCGGGTGCTCCCCGTGTCCGAAGATGACGCCGAAGTAAGAAC
TTCTTTCTCACCATCGACGTCGTTAGAAAAAGCCGATGTGGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig821:79835..80278+

>mRNA_F-serratus_M_contig821.19617.1 ID=mRNA_F-serratus_M_contig821.19617.1|Name=mRNA_F-serratus_M_contig821.19617.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig821:79835..80278+ (Fucus serratus male)
GTTTGCATCTTCTTGCTCCATCTGCTGCTGATATCCGGACTCGAAGCGTA
CTGGCTGTTGGAGGTTTGCATCTTCTTGCTCCATCTGCTGCTGATATCCG
GACTCGAAGCGTACTGGCTGTTGGAGAAACGTTCTAAGACCGAGTGGGAA
GCAGCTCGAAGTCGTGGCACCACCGATAGCGAGATGCGAGCGCGTTTATC
TGGCAAACACGTCCGCCATCGGGTGCTCCCCGTGTCCGAAGATGACGCCG
AAGTAAGAACTTCTTTCTCACCATCGACGTCGTTAGAAAAAGCCGATGTG
GGAAAACGTTCTAAGACCGAGTGGGAAGCAGCTCGAAGTCGTGGCACCAC
CGATAGCGAGATGCGAGCGCGTTTATCTGGCAAACACGTCCGCCATCGGG
TGCTCCCCGTGTCCGAAGATGACGCCGAAGTAAGAACTTCTTTCTCACCA
TCGACGTCGTTAGAAAAAGCCGATGTGGGA
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