mRNA_F-serratus_M_contig82.19611.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig82.19611.1
Unique NamemRNA_F-serratus_M_contig82.19611.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig82.19611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig82contigF-serratus_M_contig82:583370..584014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig82.19611.1prot_F-serratus_M_contig82.19611.1Fucus serratus malepolypeptideF-serratus_M_contig82 583508..583990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.6251411-UTR-F-serratus_M_contig82:583369..5835071622932440.6251411-UTR-F-serratus_M_contig82:583369..583507Fucus serratus maleUTRF-serratus_M_contig82 583370..583507 +
1690964310.0771236-UTR-F-serratus_M_contig82:583369..5835071690964310.0771236-UTR-F-serratus_M_contig82:583369..583507Fucus serratus maleUTRF-serratus_M_contig82 583370..583507 +
1622932440.6700218-UTR-F-serratus_M_contig82:583990..5840141622932440.6700218-UTR-F-serratus_M_contig82:583990..584014Fucus serratus maleUTRF-serratus_M_contig82 583991..584014 +
1690964310.0997393-UTR-F-serratus_M_contig82:583990..5840141690964310.0997393-UTR-F-serratus_M_contig82:583990..584014Fucus serratus maleUTRF-serratus_M_contig82 583991..584014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932440.643419-CDS-F-serratus_M_contig82:583507..5839901622932440.643419-CDS-F-serratus_M_contig82:583507..583990Fucus serratus maleCDSF-serratus_M_contig82 583508..583990 +
1690964310.0903118-CDS-F-serratus_M_contig82:583507..5839901690964310.0903118-CDS-F-serratus_M_contig82:583507..583990Fucus serratus maleCDSF-serratus_M_contig82 583508..583990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig82.19611.1

>prot_F-serratus_M_contig82.19611.1 ID=prot_F-serratus_M_contig82.19611.1|Name=mRNA_F-serratus_M_contig82.19611.1|organism=Fucus serratus male|type=polypeptide|length=161bp
MPTLGRRWGVGENSLVWAAHNRLSLLSVSGTSKELKTASFGTLSLELRAD
TGVEGSSSLSSKVIIIDTTNVVTCCENISCLFVRCGKKVDHFRIAESGLA
NCSSPERRRRVWATCPLPGRTVLSFRLLLCDLLIWACLVRRSGENISPVD
FWRVLGVPNE*
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mRNA from alignment at F-serratus_M_contig82:583370..584014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig82.19611.1 ID=mRNA_F-serratus_M_contig82.19611.1|Name=mRNA_F-serratus_M_contig82.19611.1|organism=Fucus serratus male|type=mRNA|length=645bp|location=Sequence derived from alignment at F-serratus_M_contig82:583370..584014+ (Fucus serratus male)
AGGTCGTCAATATCGTGACGAGAAAGTCCGCCGGCAGCTACCGTGAAGCG
CCTTGCAAATAATAGAGGGGCGCGTCCTCGAAATCCCCTCTTTCTACCCC
GGACCGATCTCCATGAACCGTCCGTATATGATGGTAACATGCCAACACTA
GGAAGAAGGTGGGGGGTGGGAGAGAATAGCCTGGTGTGGGCGGCTCACAA
TCGACTGTCTTTACTGAGCGTCAGTGGAACTTCGAAAGAACTGAAAACAG
CATCTTTCGGCACGCTTTCATTGGAGCTTCGCGCTGATACTGGGGTCGAG
GGGTCATCTTCGCTTTCCTCGAAGGTAATTATTATAGACACGACTAATGT
TGTAACGTGCTGTGAAAATATTTCGTGCCTATTTGTACGTTGTGGGAAAA
AAGTAGATCATTTTCGCATAGCAGAGTCAGGTTTAGCAAATTGTTCATCA
CCTGAACGACGGAGGAGGGTTTGGGCAACGTGTCCTCTACCCGGCCGTAC
AGTGCTGTCGTTTCGTCTGCTGTTGTGCGATTTGCTTATCTGGGCCTGCC
TGGTTCGTAGAAGTGGCGAAAATATTTCTCCCGTTGACTTTTGGCGTGTG
CTCGGCGTGCCAAACGAATAAGCCGTGTCCCACCCCAGCTTCGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig82:583370..584014+

>mRNA_F-serratus_M_contig82.19611.1 ID=mRNA_F-serratus_M_contig82.19611.1|Name=mRNA_F-serratus_M_contig82.19611.1|organism=Fucus serratus male|type=CDS|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig82:583370..584014+ (Fucus serratus male)
ATGCCAACACTAGGAAGAAGGTGGGGGGTGGGAGAGAATAGCCTGGTGTG
GGCGGCTCACAATCGACTGTCTTTACTGAGCGTCAGTGGAACTTCGAAAG
AACTGAAAACAGCATCTTTCGGCACGCTTTCATTGGAGCTTCGCGCTGAT
ACTGGGGTCGAGGGGTCATCTTCGCTTTCCTCGAAGGTAATTATTATAGA
CACGACTAATGTTGTAACGTGCTGTGAAAATATTTCGTGCCTATTTGTAC
GTTGTGGGAAAAAAGTAGATCATTTTCGCATAGCAGAGTCAGGTTTAGCA
AATTGTTCATCACCTGAACGACGGAGGAGGGTTTGGGCAACGTGTCCTCT
ACCCGGCCGTACAGTGCTGTCGTTTCGTCTGCTGTTGTGCGATTTGCTTA
TCTGGGCCTGCCTGGTTCGTAGAAGTGGCGAAAATATTTCTCCCGTTGAC
TTTTGGCGTGTGCTCGGCGTGCCAAACGAATAAATGCCAACACTAGGAAG
AAGGTGGGGGGTGGGAGAGAATAGCCTGGTGTGGGCGGCTCACAATCGAC
TGTCTTTACTGAGCGTCAGTGGAACTTCGAAAGAACTGAAAACAGCATCT
TTCGGCACGCTTTCATTGGAGCTTCGCGCTGATACTGGGGTCGAGGGGTC
ATCTTCGCTTTCCTCGAAGGTAATTATTATAGACACGACTAATGTTGTAA
CGTGCTGTGAAAATATTTCGTGCCTATTTGTACGTTGTGGGAAAAAAGTA
GATCATTTTCGCATAGCAGAGTCAGGTTTAGCAAATTGTTCATCACCTGA
ACGACGGAGGAGGGTTTGGGCAACGTGTCCTCTACCCGGCCGTACAGTGC
TGTCGTTTCGTCTGCTGTTGTGCGATTTGCTTATCTGGGCCTGCCTGGTT
CGTAGAAGTGGCGAAAATATTTCTCCCGTTGACTTTTGGCGTGTGCTCGG
CGTGCCAAACGAATAA
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