mRNA_F-serratus_M_contig818.19583.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19583.1
Unique NamemRNA_F-serratus_M_contig818.19583.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig818.19583.1 vs. uniprot
Match: A0A6H5JPN1_9PHAE (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-8
Identity = 41/94 (43.62%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   82 LERELLMRYIDLPFNLVDRVGSGLLSTVATSATTPAGGVFSDGDRGNGFERKGGVEGKTGAVPSPELSAEEGDETESGVLSKKDFRNMSLKVCS 363
            +ER+LLMRYIDLPF+ +   GSG +S                         +  V G  GA   P  SA++ DE+ESGV S KDFRNMSLKV S
Sbjct:  952 VERDLLMRYIDLPFHRMGSNGSGFVS-----------------------HEQAAVAGGRGARGIPGFSADDEDESESGVFSDKDFRNMSLKVLS 1022
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BLAST of mRNA_F-serratus_M_contig818.19583.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.890e-7
Identity = 40/91 (43.96%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   85 ERELLMRYIDLPFNLVDRVGSGLLSTVATSATTPAGGVFSDGDRGNGFERKGGVEGKTGAVPSPELSAEEGDETESGVLSKKDFRNMSLKV 357
            ER+LLMRYIDLPF+ +   GSG +S    +                G ER  GV         P  SA++ DE+ESGV   KDFRNMSLKV
Sbjct: 1063 ERDLLMRYIDLPFHRMGSNGSGFVSHEQAAVA--------------GGERARGV---------PGFSADDEDESESGVFPDKDFRNMSLKV 1130
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN1_9PHAE1.280e-843.62CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
D8LI57_ECTSI2.890e-743.96CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:41246..41629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue6.8e-07
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.6189554-CDS-F-serratus_M_contig818:41245..416291622932435.6189554-CDS-F-serratus_M_contig818:41245..41629Fucus serratus maleCDSF-serratus_M_contig818 41246..41629 +
1690964307.8000298-CDS-F-serratus_M_contig818:41245..416291690964307.8000298-CDS-F-serratus_M_contig818:41245..41629Fucus serratus maleCDSF-serratus_M_contig818 41246..41629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19583.1prot_F-serratus_M_contig818.19583.1Fucus serratus malepolypeptideF-serratus_M_contig818 41246..41629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19583.1

>prot_F-serratus_M_contig818.19583.1 ID=prot_F-serratus_M_contig818.19583.1|Name=mRNA_F-serratus_M_contig818.19583.1|organism=Fucus serratus male|type=polypeptide|length=128bp
AEAGGTSAATPFQPSCQPVWSSPVLPPLERELLMRYIDLPFNLVDRVGSG
LLSTVATSATTPAGGVFSDGDRGNGFERKGGVEGKTGAVPSPELSAEEGD
ETESGVLSKKDFRNMSLKVCSACCCNL*
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mRNA from alignment at F-serratus_M_contig818:41246..41629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19583.1 ID=mRNA_F-serratus_M_contig818.19583.1|Name=mRNA_F-serratus_M_contig818.19583.1|organism=Fucus serratus male|type=mRNA|length=384bp|location=Sequence derived from alignment at F-serratus_M_contig818:41246..41629+ (Fucus serratus male)
GCCGAAGCTGGTGGAACCTCGGCAGCAACACCCTTCCAGCCCTCCTGCCA
GCCGGTATGGTCGTCTCCGGTCCTGCCGCCGCTTGAACGGGAGCTGCTCA
TGCGCTACATCGACCTTCCGTTTAACCTCGTCGACCGCGTCGGTTCAGGG
CTGTTATCGACGGTTGCGACATCGGCGACGACTCCGGCGGGAGGCGTGTT
TTCGGACGGGGATAGGGGGAATGGGTTCGAGCGCAAAGGCGGGGTTGAAG
GTAAAACTGGAGCTGTACCTTCGCCGGAGTTGTCGGCGGAAGAAGGTGAC
GAGACCGAATCGGGAGTGCTGTCTAAGAAGGACTTCCGAAATATGAGTCT
TAAGGTGTGCTCTGCTTGCTGCTGCAACTTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:41246..41629+

>mRNA_F-serratus_M_contig818.19583.1 ID=mRNA_F-serratus_M_contig818.19583.1|Name=mRNA_F-serratus_M_contig818.19583.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig818:41246..41629+ (Fucus serratus male)
GCCGAAGCTGGTGGAACCTCGGCAGCAACACCCTTCCAGCCCTCCTGCCA
GCCGGTATGGTCGTCTCCGGTCCTGCCGCCGCTTGAACGGGAGCTGCTCA
TGCGCTACATCGACCTTCCGTTTAACCTCGTCGACCGCGTCGGTTCAGGG
CTGTTATCGACGGTTGCGACATCGGCGACGACTCCGGCGGGAGGCGTGTT
TTCGGACGGGGATAGGGGGAATGGGTTCGAGCGCAAAGGCGGGGTTGAAG
GTAAAACTGGAGCTGTACCTTCGCCGGAGTTGTCGGCGGAAGAAGGTGAC
GAGACCGAATCGGGAGTGCTGTCTAAGAAGGACTTCCGAAATATGAGTCT
TAAGGTGTGCTCTGCTTGCTGCTGCAACTTGTAGGCCGAAGCTGGTGGAA
CCTCGGCAGCAACACCCTTCCAGCCCTCCTGCCAGCCGGTATGGTCGTCT
CCGGTCCTGCCGCCGCTTGAACGGGAGCTGCTCATGCGCTACATCGACCT
TCCGTTTAACCTCGTCGACCGCGTCGGTTCAGGGCTGTTATCGACGGTTG
CGACATCGGCGACGACTCCGGCGGGAGGCGTGTTTTCGGACGGGGATAGG
GGGAATGGGTTCGAGCGCAAAGGCGGGGTTGAAGGTAAAACTGGAGCTGT
ACCTTCGCCGGAGTTGTCGGCGGAAGAAGGTGACGAGACCGAATCGGGAG
TGCTGTCTAAGAAGGACTTCCGAAATATGAGTCTTAAGGTGTGCTCTGCT
TGCTGCTGCAACTTGTAG
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