mRNA_F-serratus_M_contig818.19596.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19596.1
Unique NamemRNA_F-serratus_M_contig818.19596.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:364338..364769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.3033423-CDS-F-serratus_M_contig818:364339..3644201622932435.3033423-CDS-F-serratus_M_contig818:364339..364420Fucus serratus maleCDSF-serratus_M_contig818 364340..364420 -
1690964307.7189622-CDS-F-serratus_M_contig818:364339..3644201690964307.7189622-CDS-F-serratus_M_contig818:364339..364420Fucus serratus maleCDSF-serratus_M_contig818 364340..364420 -
1622932435.3306887-CDS-F-serratus_M_contig818:364685..3647691622932435.3306887-CDS-F-serratus_M_contig818:364685..364769Fucus serratus maleCDSF-serratus_M_contig818 364686..364769 -
1690964307.7345455-CDS-F-serratus_M_contig818:364685..3647691690964307.7345455-CDS-F-serratus_M_contig818:364685..364769Fucus serratus maleCDSF-serratus_M_contig818 364686..364769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19596.1prot_F-serratus_M_contig818.19596.1Fucus serratus malepolypeptideF-serratus_M_contig818 364340..364769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19596.1

>prot_F-serratus_M_contig818.19596.1 ID=prot_F-serratus_M_contig818.19596.1|Name=mRNA_F-serratus_M_contig818.19596.1|organism=Fucus serratus male|type=polypeptide|length=55bp
LLLVALSESLDLLVSHRGEPGKLDPTATAKRSGATRVRCPYGGGAASPLC
SGSSE
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mRNA from alignment at F-serratus_M_contig818:364338..364769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19596.1 ID=mRNA_F-serratus_M_contig818.19596.1|Name=mRNA_F-serratus_M_contig818.19596.1|organism=Fucus serratus male|type=mRNA|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig818:364338..364769- (Fucus serratus male)
CTTCTCCTTGTAGCTCTGTCGGAGAGTCTCGATCTGCTCGTGAGCCATCG
CGGCGAGCCCGGCAAGCTGGATCCGACCGCAACGGTGAAAAGAGATAACT
TTCGCCAATCAATAATAGAACGGTTGCACTAGATGAGTGAAATGAATCTA
CACATCGTCGATAGTCACAAAACGGACTCAAGAACGCCCCCCTCCCCAAG
AAGTCAAGAGCAAATCGGGTAGCGAAACAGCGCTATACGTTTGTCCAGCA
AATAAGATCGAACACACTATAATAGGTACTCCATTGCTCTTTGGGCGGTG
ACATCATCGTACCTGGTTAAAAACTTTCCACTGCGCGCGTATAACGAAGG
CCAAGCGTTCGGGCGCTACGCGCGTTCGCTGCCCGTACGGCGGCGGCGCC
GCTTCGCCTCTCTGTAGCGGCTCGTCGGAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:364338..364769-

>mRNA_F-serratus_M_contig818.19596.1 ID=mRNA_F-serratus_M_contig818.19596.1|Name=mRNA_F-serratus_M_contig818.19596.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig818:364338..364769- (Fucus serratus male)
CTTCTCCTTGTAGCTCTGTCGGAGAGTCTCGATCTGCTCGTGAGCCATCG
CGGCGAGCCCGGCAAGCTGGATCCGACCGCAACGCTTCTCCTTGTAGCTC
TGTCGGAGAGTCTCGATCTGCTCGTGAGCCATCGCGGCGAGCCCGGCAAG
CTGGATCCGACCGCAACGGCCAAGCGTTCGGGCGCTACGCGCGTTCGCTG
CCCGTACGGCGGCGGCGCCGCTTCGCCTCTCTGTAGCGGCTCGTCGGAGG
CCAAGCGTTCGGGCGCTACGCGCGTTCGCTGCCCGTACGGCGGCGGCGCC
GCTTCGCCTCTCTGTAGCGGCTCGTCGGAG
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