mRNA_F-serratus_M_contig818.19590.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19590.1
Unique NamemRNA_F-serratus_M_contig818.19590.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:141735..146663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size192
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19590.1prot_F-serratus_M_contig818.19590.1Fucus serratus malepolypeptideF-serratus_M_contig818 141761..146626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.949149-UTR-F-serratus_M_contig818:141734..1417601622932434.949149-UTR-F-serratus_M_contig818:141734..141760Fucus serratus maleUTRF-serratus_M_contig818 141735..141760 -
1690964307.5595012-UTR-F-serratus_M_contig818:141734..1417601690964307.5595012-UTR-F-serratus_M_contig818:141734..141760Fucus serratus maleUTRF-serratus_M_contig818 141735..141760 -
1622932435.0328796-UTR-F-serratus_M_contig818:146626..1466631622932435.0328796-UTR-F-serratus_M_contig818:146626..146663Fucus serratus maleUTRF-serratus_M_contig818 146627..146663 -
1690964307.6073043-UTR-F-serratus_M_contig818:146626..1466631690964307.6073043-UTR-F-serratus_M_contig818:146626..146663Fucus serratus maleUTRF-serratus_M_contig818 146627..146663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.9750624-CDS-F-serratus_M_contig818:141760..1418141622932434.9750624-CDS-F-serratus_M_contig818:141760..141814Fucus serratus maleCDSF-serratus_M_contig818 141761..141814 -
1690964307.5737298-CDS-F-serratus_M_contig818:141760..1418141690964307.5737298-CDS-F-serratus_M_contig818:141760..141814Fucus serratus maleCDSF-serratus_M_contig818 141761..141814 -
1622932435.011471-CDS-F-serratus_M_contig818:146551..1466261622932435.011471-CDS-F-serratus_M_contig818:146551..146626Fucus serratus maleCDSF-serratus_M_contig818 146552..146626 -
1690964307.589413-CDS-F-serratus_M_contig818:146551..1466261690964307.589413-CDS-F-serratus_M_contig818:146551..146626Fucus serratus maleCDSF-serratus_M_contig818 146552..146626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19590.1

>prot_F-serratus_M_contig818.19590.1 ID=prot_F-serratus_M_contig818.19590.1|Name=mRNA_F-serratus_M_contig818.19590.1|organism=Fucus serratus male|type=polypeptide|length=43bp
MDVPAGVTQEEDHTGFLIHLPSAVRPFLSLVDREVEFCVLTN*
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mRNA from alignment at F-serratus_M_contig818:141735..146663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19590.1 ID=mRNA_F-serratus_M_contig818.19590.1|Name=mRNA_F-serratus_M_contig818.19590.1|organism=Fucus serratus male|type=mRNA|length=4929bp|location=Sequence derived from alignment at F-serratus_M_contig818:141735..146663- (Fucus serratus male)
GTTGTGTGTTTTTTCTTCCCATCTATTCTGGACATCAATGGACGTACCAG
CCGGGGTCACACAGGAGGAAGATCACACAGGATTTCTCATCCACCTTCCT
TCTGCGGTGCGTGCCTTAATTTTTATCGCGAGAAGGATTCAGCCATTCCT
TTCCATCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGGTTTTTAATC
GTTCTCCACCCGTTGGGCATTTTTATTTTAGTTTTTTAGTTTTTAGTGAG
AAAAATCCCGTTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGACGGT
TACGAGGTACCTCTGAGCTACCGGGGCGACCGGCATCACTACGGCGGAAG
TTTTTAGGCGGTAATGCCATACGGCAGTAATGTTTGGGCGGCAATGCCAT
ACGCCGGTAATCTTTTGGCGGCAGGCGTTTTTTTTTCGTTTCTGGGCGGT
AACAACTTCGGTGGAAGCGGTAAAACCAAAATATGGTGGTATTTTGTCGG
CGTTAAGCGGGTTTTCGGCGGTAATGACTTTGGCGGAGGCGGTAAAGCCA
AAAGATGGCGGTAAACCGCCATTTACCGCTTCCGCCCACCAGGGCGATAA
TTTCACGGCGGGAAACTCTTCGGCTAATTCCAGGTGAATGGTGTCGTGTA
CTTGGATAATATGAAGATTCCACATCATCATGGTCCTCTGTTCCCGTTTC
AATGTTGTATTGGATTCGTCTTGACTGTTTGATGATGTACTGTTTTGTCC
TTGCTGTTTTTATGGTGTCCCTGCATGGCGATTGATGTAAGTGTACAGTA
TGTATGGTCACACATATAGCAAGAGTATGGATCAACCTGGTAAGGTTGCC
AATCCTGCTCGTGGTCAGCTGAACAAGGAAAAAGAATATTCCCCTGTCCG
CGTTCGCGCCTGAGAATTTGGTCTCGCGAGACGGTTTCGGCAGTCCCGTC
CCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTT
ACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTTATATTAAAC
CGCCATACGCCATCGGGTAAGTCCCAAGTTTATCGGGTCACGCAATATTG
CGTACCGATGGCGTTCACTGCCGAGAGTCCGTCGGCACAGGGCCAGTAAA
TCTCAAGGTAGTTCCGAACGACTGCTGCCTTAGCAAGTCACTATGGACCA
ATTAATATACGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCA
TGTTGAAAGTAACGTATAACGGTGGGTTTCTCCCCGACATTATACTGTTG
ACCCAATTTTATCTGCATTGGGGAACTCGTTTAAATGCCATGAAGAGGTT
TTGTATTCGCAGCCTTTGATACCACCTAAACGTTTCGATTTTTCCGGCGG
ATCAGAAGGTCTAGGTGCATTCAGATTTTTCTTCAAAAAAACTTATTTTC
CTGGTAAGGCTGTAGTCTAGTGAAAAAATCCCCGGACCTCCGCTTTTCAA
CCATTCAACAAACGTCTAGGTGCGTTCTGTATTTTCTTCAAAAACTTGTT
TCAAATTTATTATAAAAACAATTTCATGCGGTACAATGTCTGTACCAATT
GGGAGCCACCATATGCCCACAAACATGCTGGCTCGCGGCGCGCGCGAACA
CAGCTGGGGAGGGTGCTTGCTCAAATCAACAGCCCGGGGCCCCTGAAGGT
GCGTGCGTGTGAAGGTACATCAGAGGGCTCGTCGGCTGAAATTTTTATGC
TTGAACATGCCCTGTGTCGCTCAAATTCGTCGTCGGAAAAATCAGCCCTT
GCGGCTGAACCTCAAATTGGAGGGAATCCTGCACTCAACCTGTAGAGCGC
CTTTTGAAGCTATGCGGCGTGGAGATAGTGCATTGTGAAGGCAGAATATT
GAACCTAGTACAATACTCTGGGGATTCAAGTTCCTATCTCCTTCGCGGGT
GTGGCATGGCCGGATAAAAATTGACCTTTGTGATCACAAAACTCACCAAA
ATTTGCTACTGTTACCTGTAGACAAAAAAACTCGCAAATGCTCCGCATCC
TGTACGGGTTCCCCCAAAAACAGCATTCACCTGCGCCACATGTCCCCTGG
ACCCCCACAGCAGTGGTATATCGAACCCTTGAGGTGTTGTCGTTGTGCCT
GAAGAACAACGAGCTTCAAAAATGCTGTACAGCAGGCACGGTCGACATTT
TTGTCAAAATAACGTCTTATGCCGCAGTTGGTCCATCCGGGACCCGAAGT
GGTCATCTTTGACGCGCCAAACAGGGGCAATCCTCTCGCTAACGACTCTT
ACGCCCTCAATAAGAAAGATACCTTACATCCGGCTCGACCCATTTATGGT
ATGGCAATGCGTTATCTCCAGCTCGCCGGGCTTGAATTTTGCGATACCGC
ATATGTAAAGTATCAGTTTTCCCAGCTTTAAATATGCCTGTTGTTTATTT
GGAGTCACAGGTACTTGTAACTACAATACTATTAATAGTACATGTGTATA
GTTGAAGGTGTTTTTACCCTCGCCGTACGGCTTGTCTGCTGTTTGTATAC
ATATTATATATCATATGACCTCAAATTGTAGGTACAGACAGCGATAATAC
ACAGCTGCATCGCCGCGTCGCGTGCATATTGTCTGCCGCCTGGACAAATT
GTACGCACGTGCGTTAGAAACCGCTCTTGGCTGTCCGTATGGCTGTGCCA
GTATTGTGTTTTTCATGTTCCCTTCTCGTCGGTATTGATAGGTACAAAGA
GGTTAGATTGTCCGGGATTGAAATTTGAAAGAAATTTGCAATGCAGTGTA
TACTATTAGTATAACTTACACGTTTTTTCTACAACTACTTCAGGTTGCTA
CAGTAGTACCGGTACAGCAGTGGCTACGTTTTGACACACAACATATTTTC
TCGTCTATATATTAGACTGTAAACATTTTTGTACAGGAACAAGGTTCCAC
GGCAGTACATCATCGGTAATTATGTTTTGAAACACAACATATTTTGTATT
GTGTAACCCGGGACCATGAGTAAAACGGAGTATTTATTATGTTTTGAGAA
ACAACAGATTTTCTACGGTGAGCCTATTTACCGGGGGCACCTTCGGGTTT
TTATAGAAAAACTAGAACGCGCCTAGACCTTCTGAGCTTCCCGCAGTCAG
GGGGGGGAAATGTCAAAACGTTCAGGTGGGAACATAGGCTTTTTGTTGCG
GGCACGCTTCGGGATCTCTCTTCTCCTTCCGCGATGGTTCGCTGTTGGTG
CACCTTACGCGAGTCCGTGCTCTGTACCCGGGCACTCCTACTGCTGCACA
CTATTTTATACCAGGTACATATTTCCAGCAATCCTCGCGAGATTTATTTT
TATTCGCGTGTTTAAAGGGATGCTTTGTCTGAGTTCGTCGTCCAGGAACA
GAAAAAAACGAACGGTAACCAGCAAAAAACACGCCTCGAGGCGAGCAAAC
CTCCTACCGTAGTAGTAGTAGTAGTAGTATTCTTCACATTAACCGATCGG
GCCTCAACCATACCTAGTAATGTACGCGGTTGCCAATCCGGTACGTGGTC
ACAAAGAGGTACAAAGGTCAACGGGGCACATCATGATGACAACCCGCTAC
TCAGACCAATAGGGATCCAAATCGCGACAAAAAGTTATGCGACTCTACAA
GCATTTGCACCGACCAAACGAAACGGTTCATCAAACATCCTTACTCCATA
TCGAGAGCAACCTCGATCGACTCGGATTGTTATCGCCTACCCACGACCAG
CGTTCTCAGCAAAAAACCGGAAGAATTACGCTCCAACCAGTTTTGATCAA
CAAAATTCCAAGTTTCTCAAGGCCACTCAATCTACAGAAATAAGAAAAAT
TGAATTACCGAGGTCCATGGTGGTGGAGGCCTTGAGCTGGTGAGGCCGGC
GCGCGAGCCAGTATCCAGCTGTCCGAAGCCCTGTGCATCCCTGAAAAAAG
TCCCACGAATCTTGCCCGTTCGCCGCTCCTTACGGCCCTCGTAGGAAGAC
AAATGACCGTGAGGTCAGATGTCAGCTTTTCCTTAGAAACCTCCCGGTTC
GCGCCTGTGATTCTCGCGCACAGGGTTCGGCCCTCCCTGGCTCGTCAAGG
ATCGAGCTGCCCTCCGCCTTCGCCGAATCTGGTGCGTACCCACCCGGTAG
AGCACTACCAGGCTCTCCGCGACAGTGCTCCCTGCCTCTCGCGTGCCGCT
ACCCTCCCGAAAGCCACCAAATTGAGGCTCGGAAGAGGCGCACACCTGGG
AACACCATCATCTTCAGCCAACCATACCGCCGCCGCGTCTCAACCTACAG
GCTGAATCGCGAAGGCAGCCAGTTGGCTGCACCTCTTGAGGGTGAGTCCG
GCCCTACACCCGCCGGAAAGACCCTCCCACACTCATACCCCGAAACCAGG
CTTCGGAGGGAGAGAGGGCACGAGGGAGGTATAGTAGTCTAGACTACAGC
GTGCAAGATTGGCAACCTTAACCGGTCGATCCATATTTTTTGCTGTATGT
GTGACCATACATATATGCCCACTTCATACCATTAGTGGGTGTGGGAAAGA
GAGGCGCATATTAGTTGGTCCATGGTGACCTACCAAGGCAGCACCCGTTT
GGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGTGGACTCTCTGCAGTG
AACGCCATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCG
ATGGCGTATGGCGGTGTGTGTTTTGTGTTTTCTTCCCATCCATTCTGGAC
ATCAAGTTCGTTGGACGTACCAGCCGGGGTCACACAGGATTTCTCATCCA
CCTTCCTTCTGCGGTGCGTGCCTTAATTTTTATCGCGAGAAGGATTCAGC
CATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGAAT
TAATCGTTCTCCACCCGTTGGGCATTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:141735..146663-

>mRNA_F-serratus_M_contig818.19590.1 ID=mRNA_F-serratus_M_contig818.19590.1|Name=mRNA_F-serratus_M_contig818.19590.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig818:141735..146663- (Fucus serratus male)
ATGGACGTACCAGCCGGGGTCACACAGGAGGAAGATCACACAGGATTTCT
CATCCACCTTCCTTCTGCGGTGCGTATGGACGTACCAGCCGGGGTCACAC
AGGAGGAAGATCACACAGGATTTCTCATCCACCTTCCTTCTGCGGTGCGT
CCATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGAA
TTAACCATTCCTTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAA
CGAATTAA
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