mRNA_F-serratus_M_contig818.19586.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19586.1
Unique NamemRNA_F-serratus_M_contig818.19586.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:59399..59873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size129
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19586.1prot_F-serratus_M_contig818.19586.1Fucus serratus malepolypeptideF-serratus_M_contig818 59399..59840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.851079-CDS-F-serratus_M_contig818:59398..594811622932434.851079-CDS-F-serratus_M_contig818:59398..59481Fucus serratus maleCDSF-serratus_M_contig818 59399..59481 +
1690964307.5224252-CDS-F-serratus_M_contig818:59398..594811690964307.5224252-CDS-F-serratus_M_contig818:59398..59481Fucus serratus maleCDSF-serratus_M_contig818 59399..59481 +
1622932434.873224-CDS-F-serratus_M_contig818:59794..598401622932434.873224-CDS-F-serratus_M_contig818:59794..59840Fucus serratus maleCDSF-serratus_M_contig818 59795..59840 +
1690964307.537299-CDS-F-serratus_M_contig818:59794..598401690964307.537299-CDS-F-serratus_M_contig818:59794..59840Fucus serratus maleCDSF-serratus_M_contig818 59795..59840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.89412-UTR-F-serratus_M_contig818:59840..598731622932434.89412-UTR-F-serratus_M_contig818:59840..59873Fucus serratus maleUTRF-serratus_M_contig818 59841..59873 +
1690964307.5487812-UTR-F-serratus_M_contig818:59840..598731690964307.5487812-UTR-F-serratus_M_contig818:59840..59873Fucus serratus maleUTRF-serratus_M_contig818 59841..59873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19586.1

>prot_F-serratus_M_contig818.19586.1 ID=prot_F-serratus_M_contig818.19586.1|Name=mRNA_F-serratus_M_contig818.19586.1|organism=Fucus serratus male|type=polypeptide|length=43bp
GEDCGGDRDGPERVRSILHQTPGHRKGGLAATVRRQWNAGSG*
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mRNA from alignment at F-serratus_M_contig818:59399..59873+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19586.1 ID=mRNA_F-serratus_M_contig818.19586.1|Name=mRNA_F-serratus_M_contig818.19586.1|organism=Fucus serratus male|type=mRNA|length=475bp|location=Sequence derived from alignment at F-serratus_M_contig818:59399..59873+ (Fucus serratus male)
GGTGAAGATTGTGGAGGTGATCGGGACGGGCCAGAGCGGGTTCGATCGAT
TCTGCATCAAACTCCAGGCCACCGAAAAGGTGGGTGAGTGAAACCGATCC
ATCGATGTCGGGTCCGGTCCGTCTCACCTGACGTGACCTGACCTGCCCTG
TTCTATAGCCTGACCCTGGGGTGTACTTGCTACCTTCCTTACCAAAGTTT
TCGGTGTGTAATATTTCCGTTCTGTGCTGCTTGCAAGAACAATGCCAAAT
CTGTACCGGTATGAGCTTCGTTCGGATCGGATACTGGAAGACACTGTTTA
ACAATGTCGTGGTCTTTGCTCTGCTTTGCTTTGCTTTGCTTTGGCCCGCT
CTTTCCACCTCCGTTTTTGTTATATTGTTAATAATTATAATAATAGTCTG
GCCGCGACGGTGAGGCGTCAATGGAACGCCGGGAGTGGGTGACGTGGCGA
CGCCTCACAGAGTTCGTCGCTCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:59399..59873+

>mRNA_F-serratus_M_contig818.19586.1 ID=mRNA_F-serratus_M_contig818.19586.1|Name=mRNA_F-serratus_M_contig818.19586.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig818:59399..59873+ (Fucus serratus male)
GGTGAAGATTGTGGAGGTGATCGGGACGGGCCAGAGCGGGTTCGATCGAT
TCTGCATCAAACTCCAGGCCACCGAAAAGGTGGGGTGAAGATTGTGGAGG
TGATCGGGACGGGCCAGAGCGGGTTCGATCGATTCTGCATCAAACTCCAG
GCCACCGAAAAGGTGGTCTGGCCGCGACGGTGAGGCGTCAATGGAACGCC
GGGAGTGGGTGATCTGGCCGCGACGGTGAGGCGTCAATGGAACGCCGGGA
GTGGGTGA
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